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Combined display of all available logs of Research Computing Center Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 14:03, 2 July 2025 Shtsai talk contribs created page Sapelo2 scheduled maintenance for July 29-31, 2025 (Created page with " ==Upcoming Sapelo2 maintenance== Per GACRC's standing policy on regular maintenance, our next scheduled window is on '''July 29-31, 2025'''. The main tasks to be performed are: *Update the cluster Linux operating system from Rocky 8 to Rocky 9. *Migrate user home directories to a new storage device. *Update firmware of some computing and network hardware. Sapelo2, including the Open OnDemand interface, the xfer nodes, and Globus will be unavailable during this...")
• 12:57, 30 June 2025 Shtsai talk contribs created page Software installed on Rocky 9 (Created page with " As part of our July 29-31,2025 maintenance window, the GACRC will be upgrading the Sapelo2 cluster operating system from Rocky 8 to Rocky 9. Because this is a major OS update, we need to recompile all the applications and ensure that they work with the new version of OS. Below is a list of the modules already installed on the Rocky 9 system. More software packages continue to be installed. If the software you need is not in this list yet, please feel free to let us...")
• 11:46, 30 June 2025 Shtsai talk contribs created page Rocky 9 Transition Guide (Created page with " ==Introduction== As part of our July 29-31,2025 maintenance window, the GACRC will be perform the following tasks: * Update the cluster Linux operating system from Rocky 8 to Rocky 9. * Migrate the home directories to a new storage device. * Update firmware of some computing and network hardware. ==Why is a major Operating System (OS) update necessary?== * Existing OS (Rocky 8) is End of Life - There are no more full version updates being released for the existin...")
• 09:20, 5 June 2025 Moses talk contribs created page PASA-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.8.17 === Author / Distributor === https://github.com/nextgenusfs/funannotate https://funannotate.readthedocs.io/en/latest/ === Description === "Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but...")
• 15:14, 20 May 2025 Jordan talk contribs created page EGAPx-Sapelo2 (Initial creation of this page)
• 09:26, 25 April 2025 Chelsea talk contribs uploaded a new version of File:GACRC virtual environments training v1.1.pdf
• 12:34, 24 April 2025 Isaiah talk contribs created page File:GNU Parallel and SLURM Arrays v1.pdf (Fixed a few last-minute typos)
• 12:34, 24 April 2025 Isaiah talk contribs uploaded File:GNU Parallel and SLURM Arrays v1.pdf (Fixed a few last-minute typos)
• 15:05, 23 April 2025 Isaiah talk contribs created page File:GNU Parallel and SLURM Arrays.pdf
• 15:05, 23 April 2025 Isaiah talk contribs uploaded File:GNU Parallel and SLURM Arrays.pdf
• 22:26, 22 April 2025 Jerky talk contribs deleted page File:Univa Grid Engine Administration Manual.pdf
• 15:05, 26 March 2025 Jordan talk contribs created page SnpEff-Sapelo2 (Created 03/26/2025 to provide users documentation on using snpEff in our specific environment (in particular, to let users know where to find the required config file))
• 15:36, 20 March 2025 Shtsai talk contribs created page Gocryptfs-Sapelo2 (Created page with "Category:Sapelo2Category:SoftwareCategory:Other === Category === Other === Program On === Sapelo2 === Version === 2.5.2 === Author / Distributor === Please see https://nuetzlich.net/gocryptfs/ === Description === Gocryptfs is an implementation of an encryption overlay filesystem, which uses file-based encryption that is implemented as a mountable FUSE filesystem. For more details see *[https://nuetzlich.net/gocryptfs/ gocryptfs homepage] *...")
• 16:20, 12 March 2025 Chelsea talk contribs created page File:Load new condakernel.png
• 16:20, 12 March 2025 Chelsea talk contribs uploaded File:Load new condakernel.png
• 16:19, 12 March 2025 Chelsea talk contribs uploaded a new version of File:New-jupyter-interface.png
• 16:18, 12 March 2025 Chelsea talk contribs uploaded a new version of File:Load new pythonkernel.png
• 16:17, 12 March 2025 Chelsea talk contribs uploaded a new version of File:Load pythonkernel.png
• 16:09, 12 March 2025 Chelsea talk contribs created page File:Load pythonkernel.png
• 16:09, 12 March 2025 Chelsea talk contribs uploaded File:Load pythonkernel.png
• 16:08, 12 March 2025 Chelsea talk contribs created page File:Load new pythonkernel.png
• 16:08, 12 March 2025 Chelsea talk contribs uploaded File:Load new pythonkernel.png
• 16:07, 12 March 2025 Chelsea talk contribs created page File:New-jupyter-interface.png
• 16:07, 12 March 2025 Chelsea talk contribs uploaded File:New-jupyter-interface.png
• 15:51, 12 March 2025 Chelsea talk contribs created page Using a Python environment in Jupyter (Created page with "== Python environment == A Python environment is a type of virtual environment. Python environments are used to contain a set of software/packages that you install (via pip) into that environment that may be accessed any time you activate the environment. To learn more about Python environments, please see our wiki page on creating Python environments '''here.''' == Open OnDemand == Open OnDemand is a...") Tag: Visual edit: Switched
• 16:17, 19 February 2025 Chelsea talk contribs created page File:GACRC virtual environments training v1.1.pdf
• 16:17, 19 February 2025 Chelsea talk contribs uploaded File:GACRC virtual environments training v1.1.pdf
• 11:35, 12 February 2025 Moses talk contribs created page Funannotate-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.8.17 === Author / Distributor === https://github.com/nextgenusfs/funannotate https://funannotate.readthedocs.io/en/latest/ === Description === "Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but...")
• 16:11, 30 January 2025 Shtsai talk contribs created page Changes implemented during January 28-29, 2025 maintenance (Created page with " ==NVIDIA driver updated== The NVIDIA driver on all the GPU nodes on Sapelo2 was updated to version 565.57.01, which supports CUDA version 12.7. ==/db migrated to a faster storage device== As part of our services, the GACRC builds and hosts local copies of frequently used application data. Datasets are located in the commonly shared "/db" filesystem. During this maintenance, the /db filesystem was migrated to a faster storage device. Old database files which have not...")
• 12:07, 14 January 2025 Moses talk contribs uploaded a new version of File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-Spring2025.pdf
• 12:03, 14 January 2025 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-spring2025.pdf (New version with 4 devices per node)
• 12:03, 14 January 2025 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-spring2025.pdf (New version with 4 devices per node)
• 12:02, 14 January 2025 Moses talk contribs undeleted page File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-Spring2025.pdf (1 revision and 1 file) (Test)
• 11:58, 14 January 2025 Moses talk contribs deleted page File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-Spring2025.pdf (Wrong version)
• 11:56, 14 January 2025 Moses talk contribs deleted page File:GACRC Teaching cluster new user training workshop-phys8602-Spring2025.pdf (Deleted old revision 20250114155602!GACRC_Teaching_cluster_new_user_training_workshop-phys8602-Spring2025.pdf: Wrong version)
• 11:56, 14 January 2025 Moses talk contribs uploaded a new version of File:GACRC Teaching cluster new user training workshop-phys8602-Spring2025.pdf
• 11:22, 14 January 2025 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-Spring2025.pdf
• 11:22, 14 January 2025 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330-Spring2025.pdf
• 16:03, 3 January 2025 Moses talk contribs created page File:Gacrc handout2025 phys8602.pdf
• 16:03, 3 January 2025 Moses talk contribs uploaded File:Gacrc handout2025 phys8602.pdf
• 16:00, 3 January 2025 Moses talk contribs created page File:GACRC Teaching cluster new user training workshop-phys8602-Spring2025.pdf
• 16:00, 3 January 2025 Moses talk contribs uploaded File:GACRC Teaching cluster new user training workshop-phys8602-Spring2025.pdf
• 15:53, 3 January 2025 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop-Spring2025.pdf
• 15:53, 3 January 2025 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop-Spring2025.pdf
• 13:00, 26 November 2024 Jordan talk contribs created page AlphaFold3-Sapelo2 (Created 11/26/2024 for the new deployment of AlphaFold3.)
• 11:32, 1 November 2024 User account Kris talk contribs was created by Jerky talk contribs and password was sent by email
• 12:32, 8 October 2024 Shtsai talk contribs created page File:OOD JupyterNotebook example.png
• 12:32, 8 October 2024 Shtsai talk contribs uploaded File:OOD JupyterNotebook example.png
• 14:42, 24 September 2024 Shtsai talk contribs created page File Management (Created page with " ==File Compression with pigz== In order to save space, we recommend that users compress their files before transferring them into their group's /project file system. The gzip command can be used to compress files, but it uses a single thread on a single core. The pigz command is a parallel implementation of gzip that can run with multiple threads, making use of multiple cores. The unpigz command is equivalent to gunzip and it can be used to uncompress gzip'ed file...")
• 09:33, 19 September 2024 Shtsai talk contribs created page File:GACRC overview 20240920-FYOS.pdf (Slides for a freshman seminar in Engineering.)