All public logs

Combined display of all available logs of Research Computing Center Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 12:00, 26 November 2024 Jordan talk contribs created page AlphaFold3-Sapelo2 (Created 11/26/2024 for the new deployment of AlphaFold3.)
• 10:32, 1 November 2024 User account Kris talk contribs was created by Jerky talk contribs and password was sent by email
• 11:32, 8 October 2024 Shtsai talk contribs created page File:OOD JupyterNotebook example.png
• 11:32, 8 October 2024 Shtsai talk contribs uploaded File:OOD JupyterNotebook example.png
• 13:42, 24 September 2024 Shtsai talk contribs created page File Management (Created page with " ==File Compression with pigz== In order to save space, we recommend that users compress their files before transferring them into their group's /project file system. The gzip command can be used to compress files, but it uses a single thread on a single core. The pigz command is a parallel implementation of gzip that can run with multiple threads, making use of multiple cores. The unpigz command is equivalent to gunzip and it can be used to uncompress gzip'ed file...")
• 08:33, 19 September 2024 Shtsai talk contribs created page File:GACRC overview 20240920-FYOS.pdf (Slides for a freshman seminar in Engineering.)
• 08:33, 19 September 2024 Shtsai talk contribs uploaded File:GACRC overview 20240920-FYOS.pdf (Slides for a freshman seminar in Engineering.)
• 08:21, 17 September 2024 Moses talk contribs created page DMRIharmonization-Sapelo2 (Created page with "Category:Sapelo2Category:SoftwareCategory:Engineering === Category === Engineering === Program On === Sapelo2 === Version === 20240227 === Author / Distributor === See https://github.com/pnlbwh/dMRIharmonization === Description === "dMRIharmonization repository is developed by Tashrif Billah, Sylvain Bouix, Suheyla Cetin Karayumak, and Yogesh Rathi, Brigham and Women's Hospital (Harvard Medical School)." For more information, please see https://...")
• 14:16, 13 September 2024 Moses talk contribs created page File:AI Resources on the GACRC Sapelo2 Cluster.pdf
• 14:16, 13 September 2024 Moses talk contribs uploaded File:AI Resources on the GACRC Sapelo2 Cluster.pdf
• 11:27, 20 August 2024 Shtsai talk contribs uploaded a new version of File:GACRC overview 20240820-CSP.pdf
• 11:19, 20 August 2024 Shtsai talk contribs uploaded a new version of File:GACRC overview 20240820-CSP.pdf
• 09:59, 20 August 2024 Shtsai talk contribs created page File:GACRC overview 20240820-CSP.pdf
• 09:59, 20 August 2024 Shtsai talk contribs uploaded File:GACRC overview 20240820-CSP.pdf
• 08:38, 13 August 2024 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop Fall2024.pdf
• 08:38, 13 August 2024 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop Fall2024.pdf
• 14:27, 30 July 2024 Chelsea talk contribs created page Trinity-HpcGridRunner (Created page with " ===Description=== Instruction on how to modify a Trinity script to run in conjunction with HpcGridRunner ===Running Program=== Step 1: Create normal Trinity script * Note: normal Trinity jobs should be run utilizing /lscratch, however, this method running with HpcGridRunner does not benefit from /lscratch so this example will not have any /lscratch components in it. For more information on running normal Trinity jobs with /lscratch, please see Trinity-Sapelo2#Utilizi...") Tag: Visual edit
• 09:35, 3 July 2024 Kstanier talk contribs created page LLM Training (Added initial training workflow details) Tag: Visual edit
• 10:39, 1 July 2024 Jordan talk contribs created page RAxML-NG-Sapelo2 (Created page with "Category:Sapelo2Category:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.2.2 ===Author / Distributor=== Alexey M. Kozlov and Alexandros Stamatakis ===Description=== RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to qu...")
• 18:23, 18 June 2024 User account Kstanier talk contribs was created automatically
• 11:03, 13 June 2024 Jordan talk contribs created page BRAKER-Sapelo2 (Created page with "Category:Sapelo2Category:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.1.6, 3.0.3, 3.0.8 === Author / Distributor === [https://github.com/Gaius-Augustus/BRAKER Gaius-Augustus] === Description === "BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes." More details are at [https://github.com/Gaius-Augustus/B...")
• 09:39, 30 May 2024 Moses talk contribs created page File:Screen Shot 2024-05-30 at 10.37.57 AM.png
• 09:39, 30 May 2024 Moses talk contribs uploaded File:Screen Shot 2024-05-30 at 10.37.57 AM.png
• 10:42, 24 May 2024 User account Jordan talk contribs was created by Jerky talk contribs and password was sent by email
• 11:24, 14 May 2024 Chelsea talk contribs created page IQ-Tree-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.6.12, 2.2.2.6 ===Author / Distributor=== Please see http://www.iqtree.org/ ===Description=== Efficient phylogenomic software by maximum likelihood. More information: http://www.iqtree.org/ === Running Program === *Version 2.2.2.6, installed in /apps/eb/IQ-TREE/2.2.2.6-gompi-2022a To use this version of IQ-TREE,...")
• 11:22, 14 May 2024 Chelsea talk contribs created page HISAT2-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.2.1, 3 === Author / Distributor === [https://ccb.jhu.edu/software/hisat2/index.shtml HISAT2] === Description === "HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome)." More...")
• 11:15, 14 May 2024 Chelsea talk contribs created page EIGENSOFT-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 7.2.1 ===Author / Distributor=== [https://www.hsph.harvard.edu/alkes-price/software/ EIGENSOFT] ===Description=== The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method use...")
• 11:14, 14 May 2024 Chelsea talk contribs created page Cytoscape-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 3.9.1 === Author / Distributor === Please see https://cytoscape.org/ === Description === "Cytoscape is an open source software tool for integrating, visualizing, and analyzing data in the context of networks." more details at [http://www.cytoscape.org/documentation_users.html CytoScape] === Running Program ===...")
• 10:36, 14 May 2024 Chelsea talk contribs created page Bowtie2-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.4.1, 2.4.4, 2.4.5, 2.5.2 === Author / Distributor === [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie2] === Description === "Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or...")
• 10:32, 14 May 2024 Chelsea talk contribs created page BLAST-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.2.26 === Author / Distributor === [http://blast.ncbi.nlm.nih.gov/ BLAST] === Description === "Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences." More details...")
• 12:36, 12 April 2024 Chelsea talk contribs created page File:Jupyter-20240412.png
• 12:36, 12 April 2024 Chelsea talk contribs uploaded File:Jupyter-20240412.png
• 21:05, 1 April 2024 Shtsai talk contribs created page Office Hours (Created page with " The GACRC is offering open in-person office hours at several convenient locations on campus to assist users with using GACRC's resources. GACRC staff will be available to hel...")
• 14:09, 6 March 2024 Isaiah talk contribs created page Flankophile-Sapelo2 (Created Flankophile page) Tag: Visual edit
• 17:12, 23 February 2024 Isaiah talk contribs created page Cromwell-Sapelo2 (Creation of page that will serve as the Cromwell instructional wiki) Tag: Visual edit
• 15:49, 16 January 2024 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330 Spring2024.pdf
• 15:49, 16 January 2024 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330 Spring2024.pdf
• 13:14, 10 January 2024 Moses talk contribs uploaded a new version of File:GACRC Teaching cluster new user training workshop-phys8601-Spring2024.pdf
• 13:14, 10 January 2024 Moses talk contribs uploaded a new version of File:GACRC Teaching cluster new user training workshop-phys4601-Spring2024.pdf
• 13:08, 9 January 2024 Moses talk contribs created page File:Gacrc handout2024 phys8601.pdf
• 13:08, 9 January 2024 Moses talk contribs uploaded File:Gacrc handout2024 phys8601.pdf
• 13:07, 9 January 2024 Moses talk contribs created page File:Gacrc handout2024 phys4601.pdf
• 13:07, 9 January 2024 Moses talk contribs uploaded File:Gacrc handout2024 phys4601.pdf
• 11:12, 9 January 2024 Moses talk contribs uploaded a new version of File:GACRC Teaching cluster new user training workshop-phys8601-Spring2024.pdf
• 10:59, 9 January 2024 Moses talk contribs created page File:GACRC Teaching cluster new user training workshop-phys8601-Spring2024.pdf
• 10:59, 9 January 2024 Moses talk contribs uploaded File:GACRC Teaching cluster new user training workshop-phys8601-Spring2024.pdf
• 10:59, 9 January 2024 Moses talk contribs uploaded a new version of File:GACRC Teaching cluster new user training workshop-phys4601-Spring2024.pdf
• 09:47, 9 January 2024 Moses talk contribs uploaded a new version of File:GACRC Teaching cluster new user training workshop-phys4601-Spring2024.pdf
• 09:43, 9 January 2024 Moses talk contribs created page File:GACRC Teaching cluster new user training workshop-phys4601-Spring2024.pdf
• 09:43, 9 January 2024 Moses talk contribs uploaded File:GACRC Teaching cluster new user training workshop-phys4601-Spring2024.pdf