OnDemand/Current Annoucements

Important Notice: IGV App Unavailable, run IGV from X Desktop

The IGV app is currently not functional. However, you can still run IGV through an X Desktop session in Open OnDemand.

To do this:

• Start an X Desktop session on Sapelo2 within OnDemand.
• Select your desired resources (e.g., number of cores, memory, walltime limit, partition, etc.).
• Once the job is running and the X Desktop session is launched, open a Terminal in the X Desktop environment.
• Load the IGV module and start the application using the following commands:

ml IGV/2.19.1-Java-21

igv.sh

The igv.sh command should open the IGV GUI.