User contributions for Jordan

25 September 2025

• 15:2715:27, 25 September 2025 diff hist 0‎ AlphaFold3-Sapelo2 ‎ →‎Running Program current

24 September 2025

• 08:5508:55, 24 September 2025 diff hist +580‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

12 September 2025

• 14:2114:21, 12 September 2025 diff hist +50‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 14:2014:20, 12 September 2025 diff hist +205‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

27 August 2025

• 10:2110:21, 27 August 2025 diff hist +6,306‎ N Bracken-Sapelo2 ‎ Created this page to correspond to making the database files available in /db/Bracken/ current
• 09:3009:30, 27 August 2025 diff hist −5‎ Software ‎ →‎Partial List of Installed Software

13 August 2025

• 15:5615:56, 13 August 2025 diff hist 0‎ AlphaFold-Sapelo2 ‎ →‎Documentation current
• 15:5315:53, 13 August 2025 diff hist −188‎ m AlphaFold-Sapelo2 ‎ →‎Running Program
• 15:4515:45, 13 August 2025 diff hist −1‎ m AlphaFold-Sapelo2 ‎ →‎Documentation
• 15:4515:45, 13 August 2025 diff hist −18,392‎ AlphaFold-Sapelo2 ‎ Overhauled the documentation after the July 2025 maintenance to reflect the fact that we have v2.3.2 installed centrally and nothing else for AF2.

8 July 2025

• 13:4813:48, 8 July 2025 diff hist +25‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance) current
• 13:3213:32, 8 July 2025 diff hist +29‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)

3 July 2025

• 13:5713:57, 3 July 2025 diff hist +46‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)

2 July 2025

• 13:0113:01, 2 July 2025 diff hist +48‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)

27 May 2025

• 15:4015:40, 27 May 2025 diff hist +5‎ SRAToolKit-Sapelo2 ‎ →‎Downloading SRA Data current
• 15:3915:39, 27 May 2025 diff hist +175‎ SRAToolKit-Sapelo2 ‎ →‎Running Program
• 15:3515:35, 27 May 2025 diff hist +95‎ SRAToolKit-Sapelo2 ‎ →‎Running Program
• 14:3514:35, 27 May 2025 diff hist +8‎ SRAToolKit-Sapelo2 ‎ Edited to include v3.0.10 to the list of available versions.

20 May 2025

• 14:1414:14, 20 May 2025 diff hist +6,776‎ N EGAPx-Sapelo2 ‎ Initial creation of this page current
• 12:5712:57, 20 May 2025 diff hist +131‎ Software ‎ →‎Partial List of Installed Software

6 May 2025

• 12:1312:13, 6 May 2025 diff hist +1‎ m BRAKER-Sapelo2 ‎ →‎Running Program
• 12:1312:13, 6 May 2025 diff hist +169‎ m BRAKER-Sapelo2 ‎ →‎Running Program
• 12:0612:06, 6 May 2025 diff hist +7‎ m BRAKER-Sapelo2 ‎ →‎Running Program

2 May 2025

• 08:1608:16, 2 May 2025 diff hist +152‎ BLAST Databases-Sapelo2 ‎ Updated the list to reflect how the "human_genome" and "mouse_genome" databases have to be referenced since the NCBI couldn't just leave well enough alone. current

25 April 2025

• 14:1014:10, 25 April 2025 diff hist +11‎ Bioinformatics Databases ‎ →‎Installed Bioinformatics Databases

24 April 2025

• 15:0715:07, 24 April 2025 diff hist +1,284‎ BRAKER-Sapelo2 ‎ →‎Running Program

17 April 2025

• 11:5011:50, 17 April 2025 diff hist +192‎ Canu-Sapelo2 ‎No edit summary

2 April 2025

• 09:0709:07, 2 April 2025 diff hist 0‎ Software ‎ →‎Partial List of Installed Software
• 08:5408:54, 2 April 2025 diff hist −6‎ Software ‎ →‎Partial List of Installed Software

26 March 2025

• 14:2514:25, 26 March 2025 diff hist +1‎ m SnpEff-Sapelo2 ‎No edit summary current Tag: Visual edit
• 14:0514:05, 26 March 2025 diff hist +7,554‎ N SnpEff-Sapelo2 ‎ Created 03/26/2025 to provide users documentation on using snpEff in our specific environment (in particular, to let users know where to find the required config file)
• 13:4613:46, 26 March 2025 diff hist −5‎ Software ‎ →‎Partial List of Installed Software

25 March 2025

• 09:3909:39, 25 March 2025 diff hist −246‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 09:1609:16, 25 March 2025 diff hist +7‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 09:1409:14, 25 March 2025 diff hist +668‎ AlphaFold3-Sapelo2 ‎ →‎Running Program Tag: Visual edit: Switched

11 March 2025

• 08:0608:06, 11 March 2025 diff hist +7‎ m AlphaFold3-Sapelo2 ‎ →‎Version

4 March 2025

• 11:5311:53, 4 March 2025 diff hist −1‎ m AlphaFold3-Sapelo2 ‎ →‎Running Program
• 11:5111:51, 4 March 2025 diff hist +431‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

24 February 2025

• 12:2312:23, 24 February 2025 diff hist +10‎ m GeneMarkES-Sapelo2 ‎ →‎Running Program current Tag: Visual edit

17 January 2025

• 15:4815:48, 17 January 2025 diff hist +18‎ Bioinformatics Databases ‎ →‎Installed Bioinformatics Databases Tag: Visual edit

15 January 2025

• 10:1010:10, 15 January 2025 diff hist +278‎ AlphaFold3-Sapelo2 ‎ Updated the list of available Singularity containers to reflect the "CCDpatched" version that was built and deployed on 01/13/2025 to address some problems that a user ran into while trying to work on a protein with multiple ligands. Tag: Visual edit

13 December 2024

• 10:1510:15, 13 December 2024 diff hist −6‎ m AlphaFold3-Sapelo2 ‎ →‎Documentation Tag: Visual edit: Switched

26 November 2024

• 18:1518:15, 26 November 2024 diff hist +384‎ AlphaFold3-Sapelo2 ‎ Added a note about run times and queuing times.
• 12:3812:38, 26 November 2024 diff hist +246‎ AlphaFold3-Sapelo2 ‎No edit summary
• 12:1212:12, 26 November 2024 diff hist +4‎ m AlphaFold-Sapelo2 ‎No edit summary
• 12:1012:10, 26 November 2024 diff hist +1‎ m AlphaFold3-Sapelo2 ‎No edit summary
• 12:0512:05, 26 November 2024 diff hist +54‎ m AlphaFold3-Sapelo2 ‎No edit summary
• 12:0512:05, 26 November 2024 diff hist +500‎ AlphaFold3-Sapelo2 ‎No edit summary
• 12:0012:00, 26 November 2024 diff hist +11,584‎ N AlphaFold3-Sapelo2 ‎ Created 11/26/2024 for the new deployment of AlphaFold3.
• 11:1311:13, 26 November 2024 diff hist +196‎ Software ‎No edit summary