User contributions for Jordan

13 November 2026

• 15:1715:17, 13 November 2026 diff hist +477‎ AlphaFold3-Sapelo2 ‎ Updated to include v3.0.5 on 2026.11.13 current

28 October 2026

• 12:5112:51, 28 October 2026 diff hist +18‎ m Training ‎ →‎Best Practices for Computational Biology on Sapelo2
• 12:5112:51, 28 October 2026 diff hist +29‎ m Training ‎ →‎Sapelo2 Best Practices Tag: Visual edit
• 12:4912:49, 28 October 2026 diff hist 0‎ N File:Best Practices for Computational Biology on Sapelo2.pdf ‎No edit summary current

14 September 2026

• 09:4709:47, 14 September 2026 diff hist +870‎ Training ‎ →‎Sapelo2 Best Practices Tag: Visual edit

28 August 2026

• 10:0410:04, 28 August 2026 diff hist +167‎ ESMFold-Sapelo2 ‎ →‎Running Program current
• 09:2309:23, 28 August 2026 diff hist +1‎ ESMFold-Sapelo2 ‎ →‎Running Program

27 August 2026

• 10:5210:52, 27 August 2026 diff hist +83‎ ESMFold-Sapelo2 ‎ →‎Running Program

26 August 2026

• 14:4514:45, 26 August 2026 diff hist +5,257‎ N ESMFold-Sapelo2 ‎ Created this page on 2026.08.26
• 13:4013:40, 26 August 2026 diff hist +163‎ m Software ‎ →‎Partial List of Installed Software current

7 August 2026

• 15:5815:58, 7 August 2026 diff hist +101‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 15:1715:17, 7 August 2026 diff hist +163‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 15:1515:15, 7 August 2026 diff hist +2‎ m AlphaFold3-Sapelo2 ‎ →‎Running Program
• 15:1415:14, 7 August 2026 diff hist +7‎ AlphaFold3-Sapelo2 ‎ →‎Version
• 15:0715:07, 7 August 2026 diff hist +6‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 15:0615:06, 7 August 2026 diff hist +15‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 15:0415:04, 7 August 2026 diff hist +1,714‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

6 August 2026

• 12:1412:14, 6 August 2026 diff hist +15‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 12:1212:12, 6 August 2026 diff hist +768‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

28 July 2026

• 13:1413:14, 28 July 2026 diff hist +14‎ m AlphaFold3-Sapelo2 ‎ →‎Version Tag: Visual edit

11 May 2026

• 14:3814:38, 11 May 2026 diff hist +97‎ Bioinformatics Databases ‎ →‎Installed Bioinformatics Databases current
• 14:3214:32, 11 May 2026 diff hist +49‎ Bioinformatics Databases ‎ →‎Installed Bioinformatics Databases
• 14:2814:28, 11 May 2026 diff hist −8‎ Bioinformatics Databases ‎ →‎Installed Bioinformatics Databases Tag: Visual edit
• 14:2814:28, 11 May 2026 diff hist −644‎ Uniprot-Sapelo2 ‎ Updated the body of this article to specify what is still being hosted in /db (namely, just the FASTA files, no pre-formatted databases). current
• 14:2314:23, 11 May 2026 diff hist −54‎ Uniprot-Sapelo2 ‎ Updated external links.
• 14:2214:22, 11 May 2026 diff hist +5‎ m Uniref-Sapelo2 ‎No edit summary current
• 14:2214:22, 11 May 2026 diff hist +7‎ Uniref-Sapelo2 ‎ Updated external links.
• 14:0714:07, 11 May 2026 diff hist −429‎ BLAST Databases-Sapelo2 ‎ Removed references to no-longer-available database versions with the "_v5" version suffix as this went away in early 2020. current

24 March 2026

• 14:0614:06, 24 March 2026 diff hist +370‎ GeneMarkES-Sapelo2 ‎ →‎Running Program
• 13:1613:16, 24 March 2026 diff hist +171‎ GeneMarkES-Sapelo2 ‎ →‎Running Program

27 January 2026

• 14:2014:20, 27 January 2026 diff hist +123‎ EGAPx-Sapelo2 ‎ →‎Running Program

14 January 2026

• 13:2713:27, 14 January 2026 diff hist +230‎ Funannotate-Sapelo2 ‎ →‎Running Program

9 January 2026

• 13:3613:36, 9 January 2026 diff hist +435‎ EGAPx-Sapelo2 ‎ Updated to reflect that Nextflow v24 is required because the EGAPx developers have not fully updated their scripts to version 2 of Nextflow's domain-specific language (DSL2) and Nextflow v25 doesn't tolerate DSL1 artifacts. Tag: Visual edit: Switched

6 January 2026

• 15:2915:29, 6 January 2026 diff hist 0‎ EGAPx-Sapelo2 ‎ →‎Running Program
• 15:2715:27, 6 January 2026 diff hist −4‎ EGAPx-Sapelo2 ‎ Updated the reasons why we can't install this centrally on Sapelo2.

5 December 2025

• 10:0510:05, 5 December 2025 diff hist +172‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

25 September 2025

• 15:2715:27, 25 September 2025 diff hist 0‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

24 September 2025

• 08:5508:55, 24 September 2025 diff hist +580‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

12 September 2025

• 14:2114:21, 12 September 2025 diff hist +50‎ AlphaFold3-Sapelo2 ‎ →‎Running Program
• 14:2014:20, 12 September 2025 diff hist +205‎ AlphaFold3-Sapelo2 ‎ →‎Running Program

27 August 2025

• 10:2110:21, 27 August 2025 diff hist +6,306‎ N Bracken-Sapelo2 ‎ Created this page to correspond to making the database files available in /db/Bracken/
• 09:3009:30, 27 August 2025 diff hist −5‎ Software ‎ →‎Partial List of Installed Software

13 August 2025

• 15:5615:56, 13 August 2025 diff hist 0‎ AlphaFold-Sapelo2 ‎ →‎Documentation
• 15:5315:53, 13 August 2025 diff hist −188‎ m AlphaFold-Sapelo2 ‎ →‎Running Program
• 15:4515:45, 13 August 2025 diff hist −1‎ m AlphaFold-Sapelo2 ‎ →‎Documentation
• 15:4515:45, 13 August 2025 diff hist −18,392‎ AlphaFold-Sapelo2 ‎ Overhauled the documentation after the July 2025 maintenance to reflect the fact that we have v2.3.2 installed centrally and nothing else for AF2.

8 July 2025

• 13:4813:48, 8 July 2025 diff hist +25‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)
• 13:3213:32, 8 July 2025 diff hist +29‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)

3 July 2025

• 13:5713:57, 3 July 2025 diff hist +46‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)

2 July 2025

• 13:0113:01, 2 July 2025 diff hist +48‎ Software installed on Rocky 9 ‎ →‎List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)