User contributions for Jordan
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11 May 2026
- 15:3815:38, 11 May 2026 diff hist +97 Bioinformatics Databases →Installed Bioinformatics Databases current
- 15:3215:32, 11 May 2026 diff hist +49 Bioinformatics Databases →Installed Bioinformatics Databases
- 15:2815:28, 11 May 2026 diff hist −8 Bioinformatics Databases →Installed Bioinformatics Databases Tag: Visual edit
- 15:2815:28, 11 May 2026 diff hist −644 Uniprot-Sapelo2 Updated the body of this article to specify what is still being hosted in /db (namely, just the FASTA files, no pre-formatted databases). current
- 15:2315:23, 11 May 2026 diff hist −54 Uniprot-Sapelo2 Updated external links.
- 15:2215:22, 11 May 2026 diff hist +5 m Uniref-Sapelo2 No edit summary current
- 15:2215:22, 11 May 2026 diff hist +7 Uniref-Sapelo2 Updated external links.
- 15:0715:07, 11 May 2026 diff hist −429 BLAST Databases-Sapelo2 Removed references to no-longer-available database versions with the "_v5" version suffix as this went away in early 2020. current
24 March 2026
- 15:0615:06, 24 March 2026 diff hist +370 GeneMarkES-Sapelo2 →Running Program
- 14:1614:16, 24 March 2026 diff hist +171 GeneMarkES-Sapelo2 →Running Program
27 January 2026
- 15:2015:20, 27 January 2026 diff hist +123 EGAPx-Sapelo2 →Running Program
14 January 2026
- 14:2714:27, 14 January 2026 diff hist +230 Funannotate-Sapelo2 →Running Program
9 January 2026
- 14:3614:36, 9 January 2026 diff hist +435 EGAPx-Sapelo2 Updated to reflect that Nextflow v24 is required because the EGAPx developers have not fully updated their scripts to version 2 of Nextflow's domain-specific language (DSL2) and Nextflow v25 doesn't tolerate DSL1 artifacts. Tag: Visual edit: Switched
6 January 2026
- 16:2916:29, 6 January 2026 diff hist 0 EGAPx-Sapelo2 →Running Program
- 16:2716:27, 6 January 2026 diff hist −4 EGAPx-Sapelo2 Updated the reasons why we can't install this centrally on Sapelo2.
5 December 2025
- 11:0511:05, 5 December 2025 diff hist +172 AlphaFold3-Sapelo2 →Running Program
25 September 2025
24 September 2025
- 09:5509:55, 24 September 2025 diff hist +580 AlphaFold3-Sapelo2 →Running Program
12 September 2025
- 15:2115:21, 12 September 2025 diff hist +50 AlphaFold3-Sapelo2 →Running Program
- 15:2015:20, 12 September 2025 diff hist +205 AlphaFold3-Sapelo2 →Running Program
27 August 2025
- 11:2111:21, 27 August 2025 diff hist +6,306 N Bracken-Sapelo2 Created this page to correspond to making the database files available in /db/Bracken/
- 10:3010:30, 27 August 2025 diff hist −5 Software →Partial List of Installed Software
13 August 2025
- 16:5616:56, 13 August 2025 diff hist 0 AlphaFold-Sapelo2 →Documentation
- 16:5316:53, 13 August 2025 diff hist −188 m AlphaFold-Sapelo2 →Running Program
- 16:4516:45, 13 August 2025 diff hist −1 m AlphaFold-Sapelo2 →Documentation
- 16:4516:45, 13 August 2025 diff hist −18,392 AlphaFold-Sapelo2 Overhauled the documentation after the July 2025 maintenance to reflect the fact that we have v2.3.2 installed centrally and nothing else for AF2.
8 July 2025
- 14:4814:48, 8 July 2025 diff hist +25 Software installed on Rocky 9 →List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)
- 14:3214:32, 8 July 2025 diff hist +29 Software installed on Rocky 9 →List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)
3 July 2025
- 14:5714:57, 3 July 2025 diff hist +46 Software installed on Rocky 9 →List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)
2 July 2025
- 14:0114:01, 2 July 2025 diff hist +48 Software installed on Rocky 9 →List of software already installed centrally on the Rocky 9 system (new Sapelo2, available after the maintenance)
27 May 2025
- 16:4016:40, 27 May 2025 diff hist +5 SRAToolKit-Sapelo2 →Downloading SRA Data
- 16:3916:39, 27 May 2025 diff hist +175 SRAToolKit-Sapelo2 →Running Program
- 16:3516:35, 27 May 2025 diff hist +95 SRAToolKit-Sapelo2 →Running Program
- 15:3515:35, 27 May 2025 diff hist +8 SRAToolKit-Sapelo2 Edited to include v3.0.10 to the list of available versions.
20 May 2025
- 15:1415:14, 20 May 2025 diff hist +6,776 N EGAPx-Sapelo2 Initial creation of this page
- 13:5713:57, 20 May 2025 diff hist +131 Software →Partial List of Installed Software
6 May 2025
- 13:1313:13, 6 May 2025 diff hist +1 m BRAKER-Sapelo2 →Running Program
- 13:1313:13, 6 May 2025 diff hist +169 m BRAKER-Sapelo2 →Running Program
- 13:0613:06, 6 May 2025 diff hist +7 m BRAKER-Sapelo2 →Running Program
2 May 2025
- 09:1609:16, 2 May 2025 diff hist +152 BLAST Databases-Sapelo2 Updated the list to reflect how the "human_genome" and "mouse_genome" databases have to be referenced since the NCBI couldn't just leave well enough alone.
25 April 2025
- 15:1015:10, 25 April 2025 diff hist +11 Bioinformatics Databases →Installed Bioinformatics Databases
24 April 2025
- 16:0716:07, 24 April 2025 diff hist +1,284 BRAKER-Sapelo2 →Running Program
17 April 2025
- 12:5012:50, 17 April 2025 diff hist +192 Canu-Sapelo2 No edit summary
2 April 2025
- 10:0710:07, 2 April 2025 diff hist 0 Software →Partial List of Installed Software
- 09:5409:54, 2 April 2025 diff hist −6 Software →Partial List of Installed Software
26 March 2025
- 15:2515:25, 26 March 2025 diff hist +1 m SnpEff-Sapelo2 No edit summary Tag: Visual edit
- 15:0515:05, 26 March 2025 diff hist +7,554 N SnpEff-Sapelo2 Created 03/26/2025 to provide users documentation on using snpEff in our specific environment (in particular, to let users know where to find the required config file)
- 14:4614:46, 26 March 2025 diff hist −5 Software →Partial List of Installed Software
25 March 2025
- 10:3910:39, 25 March 2025 diff hist −246 AlphaFold3-Sapelo2 →Running Program
- 10:1610:16, 25 March 2025 diff hist +7 AlphaFold3-Sapelo2 →Running Program