Uniprot-Sapelo2

Uniprot is located at /db/uniprot. The directory name is formatted as mmddyyyy in the date of download, such as /db/uniprot/06282018 is generated at 06/28/2018

The database contains: uniprot_trembl
uniprot_sprot
uniprot_sprot_varsplic

/db/uniprot/latest/uniprot_trembl
/db/uniprot/latest/uniprot_sprot
/db/uniprot/latest/uniprot_sprot_varsplic

The command generated the data is documented at UGA file sitting at the same directory with data:

ml BLAST+/2.6.0-foss-2016b-Python-2.7.14
makeblastdb -dbtype prot -in uniprot_sprot.fasta -title uniprot_sprot  -parse_seqids -out uniprot_sprot -logfile uniprot_sprot.blast+.log
makeblastdb -dbtype prot -in uniprot_trembl.fasta -title uniprot_trembl  -parse_seqids -out  uniprot_trembl -logfile uniprot_trembl.blast+.log
makeblastdb -dbtype prot -in uniprot_varsplic.fasta -title uniprot_varsplic  -parse_seqids -out  uniprot_varsplic -logfile uniprot_varsplic.blast+.log

Back to Top

Details at Uniprot