All public logs

Combined display of all available logs of Research Computing Center Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 09:30, 17 March 2026 Shtsai talk contribs deleted page Code Compilation on pcluster (content was: "Category:pcluster ===Compilers=== Compilers Installed on IBM p655 (pcluster) {| width="100%" border="1" cellspacing="0" cellpadding="2" align="center" class="wikitable unsortable" |- ! scope="col" | ! scope="col" | IBM XL set ! scope="col" | GNU ! scope="col" | MPI |- |- | Fortran77 || xlf, xlf_r || || mpxlf, mpxlf_r |- | Fortran90 || xlf90, xlf90_r || || mpxlf90, mpxlf...", and the only contributor was "Shtsai" (talk))
• 09:29, 17 March 2026 Shtsai talk contribs deleted page CCDC / CSD Users (content was: "These are users who were contacted about the availability of the 2014 Cambridge Crystallographic Data Center CSD. I may someday clean this up with real names, etc. GD 3/17/14 Dylan Tracy <dtracy@uga.edu>, Ian Thomas <ithomas@uga.edu>, Joel Caughran <caughran@uga.edu>, summers@uga.edu Summers <summers@uga.edu>, Paul Schroeder <schroe@uga.edu>, aroberts@rx.uga.edu, Yuzhong Wang <wy...", and the only contributor was "Derda" (talk))
• 09:28, 17 March 2026 Shtsai talk contribs deleted page Bismark-Teaching (content was: "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Teaching === Version === 0.22.1 === Author / Distributor === Felix Krueger, Bioinformatics Group at the [http://www.bioinformatics.babraham.ac.uk/projects/download.html#bismark Babraham Institute] === Description === Bismark is a tool to map bisulfite conver...", and the only contributor was "Moses" (talk))
• 09:28, 17 March 2026 Shtsai talk contribs deleted page Bioinformatics Database (content was: "==Installed Bioinformatics Database List== {| width="100%" border="1" cellspacing="0" cellpadding="2" align="center" class="wikitable sortable" |- ! scope="col" width="200px"| Name ! scope="col" class="unsortable" width="240px"| Version ! scope="col" width="160px"| Category ! scope="col" width="60px"| Cluster ! scope="col" | Notes ! scope="col" | review Comments |- | Arabido...", and the only contributor was "Yhuang" (talk))
• 09:27, 17 March 2026 Shtsai talk contribs deleted page Big-Memory-Node Management (content was: "The below may be irrelevant because Yecheng has script that does detect usage. GD 7/9 WE NEED to figure out the -q thing!! *Does Yecheng have a script to parse GE output, and figure whether jobs ran that didn't use much memory? *Yecheng's script may have worked with the old billing database - true / false?", and the only contributor was "Derda" (talk))
• 09:27, 17 March 2026 Shtsai talk contribs deleted page BWA-Sapelo (content was: "hg19 is indexed at /db/hg/hg19 <pre class="gcommand"> /usr/local/apps/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19.fa </pre>", and the only contributor was "Yhuang" (talk))
• 09:26, 17 March 2026 Shtsai talk contribs deleted page BWA (content was: "hg19 is indexed at /db/hg/hg19 <pre class="gcommand"> /usr/local/bwa/latest/bwa index -p h19 -a bwtsw /db/hg/hg19/hg19.fa </pre>", and the only contributor was "Yhuang" (talk))
• 09:26, 17 March 2026 Shtsai talk contribs deleted page BEST Bayesian (content was: "=== Category === Bioinformatics === Program On === zcluster === Version === 2.3.1 === Author / Distributor === [http://www.oeb.harvard.edu/faculty/edwards/people/postdocs/Liang.htm Liang Liu] === Description === "BEST is a free phylogenetics program to estimate the joint posterior distribution of gene trees and species tree using multilocus molecular data that accounts for deep coalescence but not for other issues such as horizontal transfer or gene duplication." mo...")
• 09:25, 17 March 2026 Shtsai talk contribs deleted page AMBER-pcluster (content was: "Category:Pcluster === Category === Chemistry === Program On === pcluster === Version === 8,10 === Author / Distributor === See http://ambermd.org , this website contains the reference(s) to use when citing Amber in the literature. === Description === Amber is a package of molecular simulation programs. Pcluster currently has Amber 8 and Amber 10 installed. Amber 8 is the default version, which is on users’ path and by default the AMBERHOME variable is set...")
• 09:25, 17 March 2026 Shtsai talk contribs deleted page 3D DOCK (content was: "Category:Pcluster === Category === Chemistry === Program On === pcluster === Version === 2.0 === Author / Distributor === See [http://www.bmm.icnet.uk/docking/ 3D Dock] === Description === A suite of protein docking programs, including FTDock and RPScore (MultiDock is not available here). === Running Program === '''Example''' Shell script to run one of the sample files provided in /usr/local/3D_Dock/tutorial To run a serial job (serial.sh): <pre class="g...")
• 12:40, 3 February 2026 Shtsai talk contribs created page Nsight-Compute-CLI-Sapelo2 (Created page with "Category:Sapelo2Category:SoftwareCategory:Other === Category === Other === Program On === Sapelo2 === Version === 2023.1.1.0, 2024.1.0.0, 2024.3.0.0, 2025.1.0.0, 2025.4.0.0 === Author / Distributor === NVIDIA === Description === From https://docs.nvidia.com/nsight-compute/NsightComputeCli/index.html: "NVIDIA Nsight Compute CLI (ncu) provides a non-interactive way to profile applications from the command line. " === Running Program === Also ref...")
• 14:04, 23 January 2026 Chelsea talk contribs uploaded a new version of File:GACRC-Teaching-cluster-new-user-training-workshop-python-Spring2026.pdf
• 13:32, 23 January 2026 Shtsai talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop-python-Spring2026.pdf
• 13:32, 23 January 2026 Shtsai talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop-python-Spring2026.pdf
• 09:46, 20 January 2026 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330 Spring2026.pdf
• 09:46, 20 January 2026 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop bcmb8330 Spring2026.pdf
• 12:11, 13 January 2026 Shtsai talk contribs created page File:Gacrc handout2026 phys8601.pdf
• 12:11, 13 January 2026 Shtsai talk contribs uploaded File:Gacrc handout2026 phys8601.pdf
• 13:11, 12 January 2026 Moses talk contribs created page File:GACRC Teaching cluster new user training workshop-phys8601-Spring2026.pdf
• 13:11, 12 January 2026 Moses talk contribs uploaded File:GACRC Teaching cluster new user training workshop-phys8601-Spring2026.pdf
• 11:14, 9 January 2026 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop-Spring2026.pdf
• 11:14, 9 January 2026 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop-Spring2026.pdf
• 12:10, 17 November 2025 Shtsai talk contribs created page File:GACRC overview 20251117 Anthropology.pdf
• 12:10, 17 November 2025 Shtsai talk contribs uploaded File:GACRC overview 20251117 Anthropology.pdf
• 09:33, 26 September 2025 Bcarpenter talk contribs created page OnDemand/Current Annoucements (Created page with "== Important Notice: IGV App Unavailable, run IGV from X Desktop == The IGV app is currently not functional. However, you can still run IGV through an X Desktop session in Open OnDemand. To do this: * Start an X Desktop session on Sapelo2 within OnDemand. * Select your desired resources (e.g., number of cores, memory, walltime limit, partition, etc.). * Once the job is running and the X Desktop session is launched, open a Terminal in the X Desktop environment. * Load...")
• 12:41, 22 September 2025 Chelsea talk contribs created page File:GACRC virtual environments training v1.2.pdf
• 12:41, 22 September 2025 Chelsea talk contribs uploaded File:GACRC virtual environments training v1.2.pdf
• 11:21, 27 August 2025 Jordan talk contribs created page Bracken-Sapelo2 (Created this page to correspond to making the database files available in /db/Bracken/)
• 08:53, 19 August 2025 Shtsai talk contribs created page File:GACRC overview 20250819-CSP.pdf
• 08:53, 19 August 2025 Shtsai talk contribs uploaded File:GACRC overview 20250819-CSP.pdf
• 16:15, 14 August 2025 Moses talk contribs created page File:GACRC-Teaching-cluster-new-user-training-workshop-Fall2025.pdf
• 16:15, 14 August 2025 Moses talk contribs uploaded File:GACRC-Teaching-cluster-new-user-training-workshop-Fall2025.pdf
• 14:03, 2 July 2025 Shtsai talk contribs created page Sapelo2 scheduled maintenance for July 29-31, 2025 (Created page with " ==Upcoming Sapelo2 maintenance== Per GACRC's standing policy on regular maintenance, our next scheduled window is on '''July 29-31, 2025'''. The main tasks to be performed are: *Update the cluster Linux operating system from Rocky 8 to Rocky 9. *Migrate user home directories to a new storage device. *Update firmware of some computing and network hardware. Sapelo2, including the Open OnDemand interface, the xfer nodes, and Globus will be unavailable during this...")
• 12:57, 30 June 2025 Shtsai talk contribs created page Software installed on Rocky 9 (Created page with " As part of our July 29-31,2025 maintenance window, the GACRC will be upgrading the Sapelo2 cluster operating system from Rocky 8 to Rocky 9. Because this is a major OS update, we need to recompile all the applications and ensure that they work with the new version of OS. Below is a list of the modules already installed on the Rocky 9 system. More software packages continue to be installed. If the software you need is not in this list yet, please feel free to let us...")
• 11:46, 30 June 2025 Shtsai talk contribs created page Rocky 9 Transition Guide (Created page with " ==Introduction== As part of our July 29-31,2025 maintenance window, the GACRC will be perform the following tasks: * Update the cluster Linux operating system from Rocky 8 to Rocky 9. * Migrate the home directories to a new storage device. * Update firmware of some computing and network hardware. ==Why is a major Operating System (OS) update necessary?== * Existing OS (Rocky 8) is End of Life - There are no more full version updates being released for the existin...")
• 09:20, 5 June 2025 Moses talk contribs created page PASA-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.8.17 === Author / Distributor === https://github.com/nextgenusfs/funannotate https://funannotate.readthedocs.io/en/latest/ === Description === "Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but...")
• 15:14, 20 May 2025 Jordan talk contribs created page EGAPx-Sapelo2 (Initial creation of this page)
• 09:26, 25 April 2025 Chelsea talk contribs uploaded a new version of File:GACRC virtual environments training v1.1.pdf
• 12:34, 24 April 2025 Isaiah talk contribs created page File:GNU Parallel and SLURM Arrays v1.pdf (Fixed a few last-minute typos)
• 12:34, 24 April 2025 Isaiah talk contribs uploaded File:GNU Parallel and SLURM Arrays v1.pdf (Fixed a few last-minute typos)
• 15:05, 23 April 2025 Isaiah talk contribs created page File:GNU Parallel and SLURM Arrays.pdf
• 15:05, 23 April 2025 Isaiah talk contribs uploaded File:GNU Parallel and SLURM Arrays.pdf
• 22:26, 22 April 2025 Jerky talk contribs deleted page File:Univa Grid Engine Administration Manual.pdf
• 15:05, 26 March 2025 Jordan talk contribs created page SnpEff-Sapelo2 (Created 03/26/2025 to provide users documentation on using snpEff in our specific environment (in particular, to let users know where to find the required config file))
• 15:36, 20 March 2025 Shtsai talk contribs created page Gocryptfs-Sapelo2 (Created page with "Category:Sapelo2Category:SoftwareCategory:Other === Category === Other === Program On === Sapelo2 === Version === 2.5.2 === Author / Distributor === Please see https://nuetzlich.net/gocryptfs/ === Description === Gocryptfs is an implementation of an encryption overlay filesystem, which uses file-based encryption that is implemented as a mountable FUSE filesystem. For more details see *[https://nuetzlich.net/gocryptfs/ gocryptfs homepage] *...")
• 16:20, 12 March 2025 Chelsea talk contribs created page File:Load new condakernel.png
• 16:20, 12 March 2025 Chelsea talk contribs uploaded File:Load new condakernel.png
• 16:19, 12 March 2025 Chelsea talk contribs uploaded a new version of File:New-jupyter-interface.png
• 16:18, 12 March 2025 Chelsea talk contribs uploaded a new version of File:Load new pythonkernel.png
• 16:17, 12 March 2025 Chelsea talk contribs uploaded a new version of File:Load pythonkernel.png