Georgia Advanced Computing Resource Center: Difference between revisions

From Research Computing Center Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
 
(87 intermediate revisions by 4 users not shown)
Line 2: Line 2:
Welcome to the Georgia Advanced Computing Resource Center wiki. The information provided here is a supplement to the GACRC webpage.  The GACRC online information resources include:
Welcome to the Georgia Advanced Computing Resource Center wiki. The information provided here is a supplement to the GACRC webpage.  The GACRC online information resources include:


*[http://gacrc.uga.edu/ Web Site] – general overview
*[http://gacrc.uga.edu/ Web Site] – General overview
*[https://wiki.gacrc.uga.edu/ Wiki] – software docs and how-to’s - "You Are Here"
*[https://wiki.gacrc.uga.edu/ Wiki] – Software docs and how-to’s - "You Are Here"
*[https://kaltura.uga.edu/channel/GACRC/176125031 Kaltura] – Linux and HPC training videos
<!-- *[https://blog.gacrc.uga.edu/ Blog] – announcements -->
<!-- *[https://blog.gacrc.uga.edu/ Blog] – announcements -->
<!-- *[https://forums.gacrc.uga.edu/ Forums] – user discussion area -->
<!-- *[https://forums.gacrc.uga.edu/ Forums] – user discussion area -->
Line 13: Line 14:
<!-- default text, at end of line, is: Online -->
<!-- default text, at end of line, is: Online -->


<div style="width=100%; margin:0; background:#00CC33; font-size:120%; font-weight:bold; border:1px solid #00CC33; text-align:left; color:white; padding:0.2em 0.4em;"> Current Status: <span style="color:black"> Online </span></div>


<div style="width=100%; margin:0; background:#00CC33; font-size:120%; font-weight:bold; border:1px solid #00CC33; text-align:left; color:white; padding:0.2em 0.4em;"> Current Status: <span style="color:black"> Teaching cluster online </span></div>
<!--
 
<div style="width=100%; margin:0; background:#FF9F40; font-size:120%; font-weight:bold; border:1px solid #FF9F40; text-align:left; color:white; padding:0.2em 0.4em;"> Current Status: <span style="color:black"> Scheduled maintenance underway - Sapelo2, xfer nodes, GACRC storage systems, and Open OnDemand unavailable </span></div>
 
-->
<div style="width=100%; margin:0; background:#FF9F40; font-size:120%; font-weight:bold; border:1px solid #FF9F40; text-align:left; color:white; padding:0.2em 0.4em;"> Current Status: <span style="color:black"> Sapelo2, Sap2test, and xfer nodes inaccessible due to scheduled maintenance - Oct. 24 - 29.</span></div>
 
<!--
<!--
<div style="width=100%; margin:0; background:#FF9F40; font-size:120%; font-weight:bold; border:1px solid #FF9F40; text-align:left; color:white; padding:0.2em 0.4em;"> Current Status: <span style="color:black"> Teaching cluster inaccessible while the scheduled UGA network maintenance is on-going</span></div>
<div style="width=100%; margin:0; background:#FF9F40; font-size:120%; font-weight:bold; border:1px solid #FF9F40; text-align:left; color:white; padding:0.2em 0.4em;"> Current Status: <span style="color:black"> Teaching cluster inaccessible while the scheduled UGA network maintenance is on-going</span></div>
Line 30: Line 30:


<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> IMPORTANT NEWS </div>
<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> IMPORTANT NEWS </div>
The following is an important notice for all of our current users.
The following is an important notice for all of our current users:
<!-- * [[zcluster Decommissioning]] -->


<!-- * [[The Sapelo2 Project]] -->
* GACRC offering in-person drop-in '''[[Office Hours]]'''.
<!-- * ''' [[Upcoming Maintenance - November 16-22, 2018]]''' -->
<!-- * ''' [[Sapelo decommissioned]]''' -->
<!-- * ''' [[Changes implemented during November 16-22, 2018 maintenance]]''' -->


'''On-going Maintenance started at 6 a.m. on October 24, 2020'''
<blockquote style="background-color: lightyellow; border: solid thin grey;">  
<blockquote style="background-color: lightyellow; border: solid thin grey;">  
*Sapelo2 has been shut down for maintenance on Oct. 24, 2020 at 6 a.m. and will remain unavailable until Oct. 29, 2020 (tentative end-of-maintenance date).
'''October Office Hours:'''
*All running and pending jobs on Sapelo2 at 6 a.m. on Oct. 24 were deleted.
*'''Wednesday October 9th, 3:00-4:30 pm''' at the McBay Science library, Main floor
*Sapelo2 will migrate to Slurm and a new software environment; current job submission scripts will no longer work after this maintenance.
*Slurm migration training videos and workshops are available (see below).
*Sap2test and the xfer nodes are also unavailable during this maintenance.
</blockquote>
</blockquote>
For more information, please see '''[[Sapelo2 extended maintenance - Slurm migration]]'''
<!--
* [[Sapelo2 Frequently Asked Questions]]
-->


<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Getting Started </div>
<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Getting Started </div>
Welcome to the Georgia Advanced Computing Resource Center at the University of Georgia. If you're new to the GACRC, start with these links to get acquainted with our resources.
Welcome to the Georgia Advanced Computing Resource Center at the University of Georgia. If you're new to the GACRC, start with these links to get acquainted with our resources.
* [[User Accounts]]
*[[User Accounts]]
* [[Connecting]]
*[[Instructional Accounts]]
* [[Transferring Files]]
*[[Connecting]]
* [[Password | Changing your Password]]
*[[Transferring Files]]
* [[Frequently Asked Questions]]
*[[Password | Changing your Password]]
* [[Command List]]
*[[Frequently Asked Questions | FAQ]]
* [[Getting Help]]
*[https://wiki.gacrc.uga.edu/wiki/Quick_Reference_Guide Command List]
* [[Policies]]
*[[Getting Help]]
* [[Consulting]]
*[[Policies]]
* [[Training]]
*[[Consulting]]
 
*[[Training]]
 
<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Services </div>
Services and other resources.
* [[Instructional Accounts]]




<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> System Information </div>
<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> System Information </div>
Hardware information and operational procedures are described below.
Hardware information and operational procedures are described below.
* [[Systems]]
*[[Systems]]
* [[Disk Storage]]
*[[Disk Storage]]
* [[Sapelo2 and Sapelo2 (old) comparison]]
<!-- * [[Sapelo2 and Sapelo2 (old) comparison]] -->




<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Job and Data Management </div>
<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Job and Data Management </div>
Information on how to run jobs and data management.
Information on how to run jobs and data management.
* [[Running Jobs]]
*[[Running Jobs]]
* [[Monitoring Jobs]]
*[[Monitoring Jobs]]
* [[Job Submission Partitions]]
*[[Job Submission Partitions]]
* [[Sample Scripts | Sample Job Scripts]]
*[[Sample Scripts | Sample Job Submission Scripts]]
* [[Migrating from Torque to Slurm]]
*[[Migrating from Torque to Slurm]]
* [[Troubleshooting on Sapelo2]]
*[[Troubleshooting on Sapelo2]]
* [[Best Practices]]
*[[Best Practices]]
*[[Globus]]
*[[OnDemand | Open OnDemand]]




<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Software and Libraries </div>
<div style="width=100%; margin:0; background:#333333; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee; padding:0.2em 0.4em;"> Software and Libraries </div>
Documentation for software applications, programming tools, and usage.
Documentation for software applications, programming tools, and usage.
* [[Software]]
*[[Software]]
* [[Available Toolchains and Toolchain Compatibility]]
*[[Available Toolchains and Toolchain Compatibility]]
* [[Bioinformatics Databases]]
*[[Bioinformatics Databases]]
* [[OpenMP]]
*[[OpenMP]]
* [[MPI | Message Passing Interface (MPI)]]
*[[MPI | Message Passing Interface (MPI)]]
* [[Compilers]]
*[[Compilers]]
* [[GPU|GPU and CUDA Programming]]
*[[GPU|GPU and CUDA Programming]]
* [[Installing Applications]]
*[[Installing Applications]]




Line 105: Line 89:
* [[Galaxy]]
* [[Galaxy]]
* [[Zaney]]
* [[Zaney]]
-->


<div style="width=100%; margin:0; background:#eeeeee; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee padding:0.2em 0.4em;">
<div style="width=100%; margin:0; background:#eeeeee; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee padding:0.2em 0.4em;">
Line 112: Line 95:
<div style="width=100%; margin:0; background:#eeeeee; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee padding:0.2em 0.4em;">
<div style="width=100%; margin:0; background:#eeeeee; font-size:120%; font-weight:bold; border:1px solid #f9f9f9; text-align:left; color:#eeeeee padding:0.2em 0.4em;">
[[GACRC Advisory Committee]]</div>
[[GACRC Advisory Committee]]</div>
-->

Latest revision as of 12:55, 3 October 2024

Welcome to the Georgia Advanced Computing Resource Center wiki. The information provided here is a supplement to the GACRC webpage. The GACRC online information resources include:

  • Web Site – General overview
  • Wiki – Software docs and how-to’s - "You Are Here"
  • Kaltura – Linux and HPC training videos


Current Status: Online


IMPORTANT NEWS

The following is an important notice for all of our current users:

October Office Hours:

  • Wednesday October 9th, 3:00-4:30 pm at the McBay Science library, Main floor
Getting Started

Welcome to the Georgia Advanced Computing Resource Center at the University of Georgia. If you're new to the GACRC, start with these links to get acquainted with our resources.


System Information

Hardware information and operational procedures are described below.


Job and Data Management

Information on how to run jobs and data management.


Software and Libraries

Documentation for software applications, programming tools, and usage.


Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Georgia_Advanced_Computing_Resource_Center&oldid=22136"