NCBI Fasta-Sapelo2: Difference between revisions
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(add new databases) |
(Clarified that NCBI is ending FASTA availability and that we are no longer updating this.) |
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[[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]][[Category:Bioinformatics Database]] | [[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]][[Category:Bioinformatics Database]] | ||
As of April, 2024, the NCBI is discontinuing FASTA availability from the BLAST database; the ability to generate FASTA-formatted files from BLAST database files is retained via the blastdbcmd function of BLAST+. etc. | |||
Each fasta is located at the directory with the name pattern | Each fasta is located at the directory with the name pattern of either /db/ncbi/fasta/MMDDYYYY (e.g., /db/ncbi/fasta/09192019) or /db/ncbi/fasta/YYYYMMDD (e.g., /db/ncbi/fasta/20220401, which incidentally, is the last fully deployed version we have). | ||
The following databases are available: | The following databases are available: | ||
<pre class="gscript"> | <pre class="gscript"> | ||
nr, | nr, | ||
nt, | nt, | ||
pdbaa, | |||
swissprot, | |||
</pre> | </pre> | ||
Revision as of 15:05, 2 August 2024
As of April, 2024, the NCBI is discontinuing FASTA availability from the BLAST database; the ability to generate FASTA-formatted files from BLAST database files is retained via the blastdbcmd function of BLAST+. etc.
Each fasta is located at the directory with the name pattern of either /db/ncbi/fasta/MMDDYYYY (e.g., /db/ncbi/fasta/09192019) or /db/ncbi/fasta/YYYYMMDD (e.g., /db/ncbi/fasta/20220401, which incidentally, is the last fully deployed version we have).
The following databases are available:
nr, nt, pdbaa, swissprot,
Data source: NCBI Fasta FTP