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The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.  
The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.  


'''NOTE: New users are required to attend an introductory training session and information about that will be sent once an account is requested.'''
'''NOTE: New users are required to attend a Sapelo2 cluster introductory training session and information about that will be sent once an account is requested.'''




==Event Announcement==
==Regular Training Announcement==
In '''November 2024''', the GACRC is hosting 7 training sessions (3 Linux basics and 3 Sapelo2 cluster new user trainings and 1 Using Sapelo2 Cluster at the GACRC, Part II training).


The GACRC is going to host '''thirteen''' regular training sessions in '''September''' 2016. These sessions will provide introductions to the GACRC Linux HPC clusters, Linux basics, NCBI Blast, and Python language basics. We are also going to co-host '''one''' long session (3 hours) on R language introduction with Dr. James Monogan from the Department of Political Science at the UGA. We offer:
We will offer:


1. Four Sapelo and one zcluster new user training sessions
1. Linux training for Linux-inexperienced cluster new users (3 sessions)


2. Two Linux-I and two Linux-II introductory sessions
2. Sapelo2 cluster new user training (3 sessions)


3. Two Python sessions (I and II)
3. Using Sapelo2 Cluster at the GACRC, Part II (1 session)


4. One topical session on NCBI Blast


5. One topical session on how to submit and run jobs efficiently and correctly on Sapelo (new topical session)


6. One long session (3 hours) on R language introduction (topic introduction: https://wiki.gacrc.uga.edu/wiki/Training#Topic_Introduction)
In '''December 2024''', the GACRC is hosting 7 training sessions (3 Linux basics and 3 Sapelo2 cluster new user trainings and 1 Using Sapelo2 Cluster at the GACRC, Part II training).


We will offer:


1. Linux training for Linux-inexperienced cluster new users (3 sessions)


The GACRC is going to host '''sixteen''' training sessions in '''October''' 2016. These sessions will provide introductions to the GACRC Linux HPC clusters, Linux basics, Python language basics and GACRC Python computing resources, NCBI Blast, and NGS data processing tools. We offer:
2. Sapelo2 cluster new user training (3 sessions)


1. Four Sapelo and two zcluster new user training sessions  ('''mandatory''' for new user account creation)
3. Using Sapelo2 Cluster at the GACRC, Part II (1 session)


2. Two Linux-I and two Linux-II introductory sessions


3. Two Python sessions (I and II)


4. One topical session on NCBI Blast application on zcluster


5. One topical session on NGS application overview (new topic)


6. One topical session on How to submit and run jobs efficiently and correctly on Sapelo
'''Please Note:''' The training workshops will be offered remotely via Zoom Meeting. Detailed information on how to join the Zoom meeting will be sent to your UGA email account prior to each training session.
 
7. One topical session on Python on GACRC Computing Resources (new topic)


==Event Schedule==


====Training Location:====
===Sapelo2 Cluster New User Training===


Davison Life Sciences Complex (Life Science Building), Room C128
Our Sapelo2 training consists of 1 hr 30 mins of instructional videos, followed by a 1 hr 30 min workshop.


120 East Green Street, Athens, GA 30602
'''Prerequisites:'''


* Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.


==Event Schedule==
'''Workshop Training Goals:'''
 
* Understand the layout of Sapelo2
 
* Understand the Sapelo2 file systems
 
* Understand the Sapelo2 partitions
 
* Understand the Sapelo2 software environment
 
* Understand how to request computing resources and submit a computational batch job following the Sapelo2 cluster general workflow
 
* Understand how to initiate an interactive job
 
* Understand how to transfer files to and from the cluster


===Sapelo and zcluster New User Training===
* Understand how to get support from GACRC support team when you have any issues on cluster


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{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
! scope="col" | Title
! scope="col" |Title
! scope="col" | Date/Time
! scope="col" |Date/Time
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || September 27th, Tuesday, 2:00 PM - 3:30 PM
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 4th, Tuesday, 2:00 PM - 3:30 PM
|-
| Introduction to HPC Using zcluster at GACRC || October 6th, Thursday, 2:00 PM - 3:30 PM
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 14th, Friday, 10:00 AM - 11:30 AM
|Using Sapelo2 Cluster at the GACRC
|November 14th, Thursday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 18th, Tuesday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|November 20th, Wednesday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using zcluster at GACRC || October 20th, Thursday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|December 5th, Thursday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 27th, Thursday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|December 11th, Wednesday, 2:00 PM - 4:00 PM
|-
|-
|Using Sapelo2 Cluster at the GACRC
|December 19th, Thursday, 2:00 PM - 4:00 PM
|}
|}


===Linux Basics and Hands-on===
===Linux Training for Linux-inexperienced Cluster New Users===
The Sapelo2 High Performance Computing (HPC) cluster runs a headless Linux distribution as the operating system on each of its constituent nodes. The term headless refers to the fact that these nodes do not have a desktop graphical user interface (GUI) installed by default. Graphical desktop environments consume resources that analyses could otherwise use, so users employ a command-line interface (CLI) instead. To interact with these resources, users connect to a remote terminal via SSH and execute commands.
 
The Linux Training workshop provides hands-on practice of the fundamental Linux commands necessary to interact with HPC resources.
 
'''Prerequisite:''' Please watch the introductory videos on Linux, basic Linux terms, and Linux Paths and Directories (total ~17 minutes) '''before attending the training workshop'''.
 
* [https://kaltura.uga.edu/media/t/1_81u2kfi2/176125031 Linux]
* [https://kaltura.uga.edu/media/t/1_ol51cuyn/176125031 basic Linux terms]
* [https://kaltura.uga.edu/media/t/1_wdyxhgdg/176125031 Linux Paths and Directories]
 
'''Training Goals:'''
 
1. Understand fundamental concepts of Linux working environment (filesystem hierarchy, path, PATH, etc.) 


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2. Know how to use Linux common commands (ls, cd, pwd, cat, more, nano, mkdir, rm, cp, mv, etc.)
 
3. Understand what is Linux bash shell and know how to make a simple Linux script and run it in Linux environment
 
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! scope="col" | Title
! scope="col" | Title
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| Introduction to Linux Basics II || September 29th, Thursday, 2:00 PM - 3:30 PM
|Use Linux on Cluster
|December 3rd, Tuesday, 1:00 PM - 3:00 PM
|-
|-
| Introduction to Linux Basics I || October 7th, Friday, 10:00 AM - 11:30 AM
|Use Linux on Cluster
|December 9th, Monday, 1:00 PM - 3:00 PM
|-
|-
| Introduction to Linux Basics II || October 7th, Friday, 11:30 AM - 1:00 PM
|Use Linux on Cluster
|December 17th, Tuesday, 1:00 PM - 3:00 PM
|}
 
===Using Sapelo2 Cluster at the GACRC, Part II===
'''Prerequisites:'''
* Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.
* Sapelo2 cluster new user training.  Fundamental HPC and Sapelo2 knowledge is required for this advanced Sapelo2 workshop.
 
'''Training Goals:'''
 
1. Learn about high-performance computing framework
 
2. Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?
 
3. How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?
 
4. How can I make my job run more efficiently (through the correct use of software and hardware)?
 
5. A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2
 
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
| Introduction to Linux Basics I || October 13th, Thursday, 2:00 PM - 3:30 PM
! scope="col" | Title
! scope="col" |Date/Time
|-
|-
| Introduction to Linux Basics II || October 25th, Tuesday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC, Part II
|November 15th, Friday, 2:00 PM - 4:00 PM
|-
|-
|Using Sapelo2 Cluster at the GACRC, Part II
|December 13th, Friday, 2:00 PM - 4:00 PM
|}
|}


===Python Basics===
===Python Basics===
'''Prerequisite:''' No prerequisites
'''Training Goals:'''
1. Understand Python scientific modules and distributions
2. Understand Python general lexical conventions; Python built-in data types, like string, list, tuple, dictionary, etc.
3. Understand Python programming structures and procedural programming using functions


{| width="100%" border="1" cellspacing="0" cellpadding="2" align="center" class="wikitable unsortable"
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
! scope="col" | Title
! scope="col" | Title
! scope="col" | Date/Time
! scope="col" |Date/Time
|-
|-
| Python Language Basics I || October 21st, Friday, 10:00 AM - 11:30 AM
|Python Basics I||Not scheduled
|-
|-
| Python Language Basics II || October 21st, Friday, 11:30 AM - 1:00 PM
|Python Basics II||Not scheduled
|-
|-
|}
|}


===Topical Sessions===
===R Basics===
'''Prerequisite:''' No prerequisites
 
'''Training Goals:'''


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1. Understand fundamentals of R language, e.g. R general lexical conventions, data types, functions, and packages. Part 2 will introduce loops and functions.
 
2. Be able to manipulate and create data frames using built in functions and the dplyr package.
 
3. Interact with your file system and submit R code as a batch job to Sapelo 2. 
 
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
! scope="col" | Title
! scope="col" |Title
! scope="col" | Date/Time
! scope="col" |Date/Time
|-
|-
| How to submit and run jobs efficiently and correctly on Sapelo || September 30th, Friday, 10:00 AM - 11:30 AM
| R Basics I||Not scheduled
|-
|-
| How to submit and run jobs efficiently and correctly on Sapelo || October 11th, Tuesday, 11:00 AM - 12:30 PM
|R Basics II||Not scheduled
|-
|-
| How to run NCBI Blast on zcluster at GACRC || October 14th, Friday, 11:30 AM - 1:00 PM
|}
 
===Conda===
'''Prerequisite:''' No prerequisites
 
'''Training Goals:'''
 
1. Understand fundamentals of conda environment
 
2. Use conda to create and configure your own virtual environments
 
3. Activate your environments to run python apps from your home directory on Sapelo2
 
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|-
|-
| NGS application overview || October 28th, Friday, 10:00 AM - 11:30 AM
! scope="col" |Title
! scope="col" |Date/Time
|-
|-
| Python on GACRC Computing Resources || October 28th, Friday, 11:30 PM - 1:00 PM
|Conda Basics||Not scheduled
|-
|-
|}
|}




'''Who Should Attend: '''GACRC new cluster Sapelo users and zcluster users, or researchers who are interested in learning about the GACRC computing resources, Linux basics (Linux OS, file system, shell, common commands, Linux scripting), and scientific programming (Python, C/C++, Fortran, Perl) etc..
==How to Register==
 
'''Please Note''', the training workshops '''Using Sapelo2 Cluster at the GACRC''' and '''Use Linux on Cluster''' are '''ONLY''' offered to '''new users''' who need computing user accounts on the GACRC Sapelo2 cluster, or any current users who have never attended the GACRC Sapelo2 cluster new user training before. Please ask your group PI/UGA faculty member to send us a request for you, using the GACRC User Account Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25839
If you want to attend '''Python Basics''', '''R''', and '''Conda basics''' training sessions, please send us a request using the GACRC Training Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25852 . In your request, please tell us which session(s) you want to attend.
 
The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC fundamental introduction, Linux introductory III (Linux working environment and utilities), Bioinfomatics applications on Sapelo cluster, Perl, R, C/C++/Fortran programming, etc., in the near future. We will announce those events when they are scheduled.


==How to Register==
The GACRC Web Training page can be found at https://gacrc.uga.edu/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.


If you would like to attend, please respond by email to: '''pakala@uga.edu'''. Also please tell us which session(s) you want to attend.
== Topic Introduction==


We have '''25''' seats in the lab room, so we have a 25 user/workshop limit. Please respond at your earliest convenience to register to guarantee your seat. You are welcome and encouraged to attend those workshops to learn about how to work with the HPC clusters at the GACRC.
Title: '''Sap2test cluster migration training'''


Focus:  Slurm queueing system, including Slurm job commands, job environment variables, and job submission headers, etc.


The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC introduction, Linux introductory III (Linux working environment and utilities), Bioinfomatics applications, Python language III, Python on GACRC computing resources, C/C++/Fortran programming, etc., in the near future. We will announce those events when they are scheduled.
The new software environment on Sap2test


The GACRC Web Training page can be found at http://gacrc.uga.edu/help/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.
Other important topics related to Sap2test working environment




==Topic Introduction==
Title: '''Using Sapelo2 Cluster at the GACRC'''


Title: '''Introduction to HPC Using Sapelo Cluster at GACRC'''
Focus: Sapelo2 HPC cluster and computational batch job submission workflow


Focus: What's the new cluster at GACRC
Cluster's storage environment


New cluster's current computing resources
Computational queues on cluster


New cluster software environment
Software environment


How to operate with the new cluster
How to submit computational batch jobs


How to work with the new cluster, e.g., how to run interactive jobs; how to run batch jobs; how to make job submission scripts and request computing resources; how to check job status, etc.
Other tips and guidelines for users
   
   


Title: '''Introduction to HPC Using zcluster at GACRC'''
Title: '''Using Sapelo2 Cluster at the GACRC, Part II'''


Focus:What's zcluster at GACRC
Focus: More topics on how to use Sapelo2 cluster


zcluster current computing resources
Learn about high-performance computing framework


zcluster software environment
Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?


How to work with zcluster, e.g., how to run interactive jobs; how to run batch jobs and request computing resources; how to make job submission scripts; how to check job status, etc.
How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?


How can I make my job run more efficiently (through the correct use of software and hardware)?


Title: '''Introduction to Linux Basics I and II'''
A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2


Focus of I: Linux OS and brief history


Linux command, filesystem, and shell


Linux common commands, etc.
Title: '''Use Linux on Cluster'''


Focus of II: Linux shell
Focus: Linux OS fundamentals


Common practices on Linux shell scripting
Linux common commands, filesystem, and shell


Common Linux utilities, e.g., sort, find, grep, awk, and sed etc.
Linux shell scripting basics


Common Linux utilities, e.g., grep, sed, find, sort, and awk, etc.


Title: '''Linux Hands-on Practice Session (Basic Linux knowledge required)'''
Linux Hands-on practice


Focus: Hands-on practice on Linux common commands and shell scripting with common Linux utilities, e.g., sort, find, grep, awk, and sed etc.


Hands-on practice on the work flow of job submission on zcluster with make_escratch, qsub, qstat,and qdel etc.
Title: '''Python Basics I, II'''


Focus of I: Python language overview, scientific modules and distributions


Title: '''Python Language Basics I, II, and III'''
Python general lexical conventions


Focus of I: Overview of Python language, scientific modules and distributions
Basic built-in data types, like string, list, tuple, dictionary, etc.


General Lexical conventions
Focus of II: Programming structures: control flow and loop


Basic built-in data types
Function: procedural programming with examples, lambda expression, factory function and generator


Focus of II: Program structure: control flow and loop


Function: procedural and functional programming with examples
Title: '''R Basics I, II'''
 
Focus of I: R language overview,general lexical conventions, data types, functions, and packages.
 
Basic built-in data types, like string, numeric, list, dataframe etc. Using the dplyr package.
 
Focus of II: Programming structures: control flow, loops and functions
 
Title: '''Python on GACRC Sapelo2 Cluster'''
 
Focus: Install Python packages/modules in a user's home directory on Sapelo2 cluster
 
Python versions installed on Sapelo2
 
Python environment details on Sapelo2
 
How to know a Python package is installed or not on Sapelo2
 
How to install a Python package in user's home directory on Sapelo2
 
 
Title: '''Do It Yourself: Using Conda to create and run python environments to suit your computing needs effortlessly!'''
 
Focus: Use conda to create and configure your own python virtual environments; Activate your environments to run python apps from your home directory on Sapelo2
 
What is Conda and its environment
 
Conda on Sapelo2


Python Class
Use conda to create and configure your own python virtual environments


Focus of III: Python modules and importing
Activate your environments to run python apps from your home directory on Sapelo2


Python Package and usage


Title: '''How to submit and run jobs efficiently and correctly on Sapelo2'''


Title: '''GACRC Storage Environment'''
Focus: Sapelo2 cluster general workflow and correct computing resource requesting


Focus: Overview of Linux common commands related to file and folder operations
Overview of Sapelo2 cluster with reference tables and operational diagrams


Overview of the storage enviornment of zcluster and the new cluster at GACRC
Sapelo2 batch job submission workflow taking global scratch as job working space


How to transfer data between local and GACRC storage
How to request computing resources correctly


New file transfer node xfer2 and how to use it to transfer data between zcluster and the new cluster
How to run pipeline tasks and what are advantages/disadvantages of different options


GACRC suggestions on good practices on GACRC storage, etc;
Sapelo2 cluster guideline and practical tips




Title: '''Software installation on zcluster'''
Title: '''GACRC Storage Environment'''


Focus: Current status of software on zcluster; What GACRC have now and what should users install
Focus: Overview of Linux common commands related to file and folder operations


How to obtain, install, organize software by users; What about databases
Overview of the storage enviornment of zcluster and Sapelo cluster at GACRC


How to validate the software installation
How to transfer data between local and GACRC storage


How to trouble shoot installation, software errors, script errors, data errors, format errors, etc.
New file transfer node xfer2 and how to use it to transfer data between zcluster and the new cluster


How to get help from GACRC and Common problems/mistakes
GACRC suggestions on good practices on GACRC storage, etc;




Title: '''NCBI Blast application on zcluster'''
Title: '''NCBI Blast application on sapelo'''


Focus: Introduction to BLAST
Focus: Introduction to BLAST


BLAST job submission to zcluster
BLAST job submission to sapelo


Advantages & Disadvantages: NCBI website vs run at zcluster.
Advantages & Disadvantages: NCBI website vs run at sapelo.


Understand BLAST output
Understand BLAST output
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Title: '''NGS application overview'''
Title: '''NGS application overview at GACRC'''


Focus: Overview of Bioinformatics software's available on HPC clusters at GACRC
Focus: Overview of Bioinformatics software available on HPC clusters at GACRC


Closer look at NGS tools
It’s a brave new world – NGS and its Applications 


Examples of NGS applications and pipelines
Hardware, Software, Databases available at GACRC
 
NGS project: Logistics and resource considerations


Best practices, common mistakes, troubleshooting and getting help from GACRC
Best practices, common mistakes, troubleshooting and getting help from GACRC




Title: '''R Language Introduction'''
Title: '''Perl Language Basics I, II'''
 
Focus of I: Overview of Perl language,


Presenter: Dr. James Monogan (Department of Political Science, University of Georgia)
Perl general scripting style


Focus: Common general topics about R language
Perl fundamental data types


Description:This short course will introduce users to the program R and how to use it for data analysis.
Focus of II: Program structure: control flow and loop


Topics covered in the 3 hour session will include data management, drawing graphs, and some basic statistics.
Perl subroutine


Please download a reference book suggested by the presenter ahead of time (free if downloaded on the university network) from: http://link.springer.com/book/10.1007/978-3-319-23446-5.
Perl I/O


==Download==
==Download==


====Sapelo2 Cluster Training====
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]
|-
|}
====Sap2test Migration Training====
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|[[Media:Migrating_to_Slurm_and_new_software_environment.pdf]]
|}


====Sapelo and zcluster New User Training====
'''Please note:''' To help users familiarize with Slurm and the test cluster environment, we have prepared some training videos that are available from the '''GACRC's Kaltura channel''' at
https://kaltura.uga.edu/channel/GACRC/176125031 (login with MyID and password is required).


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==== Teaching Cluster Training====
 
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|-
|-
| [[media: Introduction to HPC Using Sapelo Cluster at GACRC v11.pdf]]
|[[Media:GACRC-Teaching-cluster-new-user-training-workshop_Fall2024.pdf]]
|-
|-
| [[media: Introduction to HPC Using zcluster at GACRC Workshop v8.pdf]]
|}
 
====Linux Training for New Cluster Users====
 
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|-
|-
| [[media: Introduction to HPC Using zcluster at GACRC Workshop Pakala 09152016.pdf ]]
|[[Media:Linux_Training_For_New_Users_Of_Cluster_Suchi_04252019.pdf]]
|-
|-
|}
|}


====Linux Basics and Hands-on====
==== Python Basics====


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{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
| [[media: Introduction to Linux Basics Part-I Workshop20160113 v3.pdf]]
|[[Media:Python_Language_Basics_I_v5.1.pdf]]
|-
|-
| [[media: Introduction to Linux Basics Part-II Workshop20151130 v2.pdf]]
|[[Media:Python_Language_Basics_II_v5.1.pdf]]
|-
|-
| [[media: Linux Hands-on Practice 20160120.pdf]]
|[[Media:Python_Basics_v6.1.pdf]]
|-
|-
|}
====R Basics====
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
| [[media: Introduction to Linux Basics Part1 09062016.pdf ]]
|[[Media:R Language Basics PowerPoint v2.0.1.pdf|Media:R_Language_Basics_PowerPoint_v2.0.pdf]]
|-
|-
|[[Media:R_Language_Basics_Document_v2.0.pdf]]
|-
|-
| [[media: Introduction to Linux Basics Part2 09092016.pdf ]]
|[[Media:R_Language_Basics_part_2_Powerpoint_v1.0.pdf]]
|-
|[[Media:R_Language_Basics_part_2_Document_v1.0.pdf]]
|-
|-
|}
|}


====Python Basics====
====Perl Basics====


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{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
| [[media: Python Language Basics I Workshop20160328 v4.pdf]]
|-
|-
| [[media: Python Language Basics II Workshop20160425 v1.pdf]]
|[[Media:Perl_Language_Basics_I_Workshop_v1.pdf]]
|-
|-
|}
|}
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====Topical Sessions====
====Topical Sessions====


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|
|-
| [[Media:AI_Resources_on_the_GACRC_Sapelo2_Cluster.pdf]]
|-
| [[Media:Using_Sapelo2_Cluster_at_the_GACRC_Part_II_Rocky8.pdf]]
|-
|-
| [[media: Introduction to GACRC Storage Environment Workshop20160427 v3.pdf]]
| [[Media:Using_Conda_on_the_GACRC_Sap2test_cluster_v1.pdf]]
|-
|-
| [[media: Software installation on zcluster.pdf]]
|[[Media:Blast_Workshop_GACRC_02012017.pdf]]
|-
|-
| [[media: Blast Workshop GACRC 02292016.pdf ]]
|[[Media:Next-Generation_Sequencing_Applications_at_GACRC_10282016.pdf]]
|-
|-
|}
|}


====Out-Reach/On-Class Talk====
==== Out-Reach/On-Class Talk====


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|-
|-
! scope="col" | Dept./Center/Institute
! scope="col" | Dept./Center/Institute
! scope="col" | Type
! scope="col" | Type
! scope="col" | Workshop PDF
! scope="col" |Workshop PDF
|-
|Engineering FYOS - Fall 2024||In-Class||[[Media:GACRC_overview_20240920-FYOS.pdf]]
|-
|CSP seminar - Fall 2024||Out-Reach||[[Media:GACRC_overview_20240820-CSP.pdf]]
|-
| BCMB8330 - Spring2024||In-Class||[[Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330_Spring2024.pdf]]
|-
|-
| The Institute of Bioinformatics and the Quantitative Biology Consulting Group || Out-Reach || [[media: Introduction to HPC Resources at GACRC BBB Talk 20151014.pdf]]
|PHYS4601/6601 - Spring2024||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601-Spring2024.pdf]] ; [[Media:Gacrc_handout2024_phys4601.pdf]]
|-
|-
| The Center for Simulational Physics || Out-Reach || [[media: Introduction to Sapelo Computing Resources at GACRC Workshop20160906.pdf]]
|PHYS8601 - Spring2024||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601-Spring2024.pdf]] ; [[Media:Gacrc_handout2024_phys8601.pdf]]
|-
|-
| Microbiology || On-Class (MIBO8150) || [[media: Introduction to HPC Resources at GACRC MIBO8150 20160926.pdf]]
|CSP seminar - Fall 2023||Out-Reach||[[Media:GACRC_overview_20230822-CSP.pdf]]
|-
|-
| Statistics || On-Class (STAT8060) || [[media: Introduction to HPC Using zcluster at GACRC Workshop STAT8060 20150826.pdf]]
|BCMB8330 - Spring2023||In-Class||[[Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330.pdf]]
|-
|-
| Biochemistry and Molecular Biology || On-Class (BCMB8211) || [[media: Introduction to HPC Using zcluster at GACRC BCMB8211 20160114.pdf]]
|PHYS4601/6601 - Spring2023||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf]] ; [[Media:Gacrc_handout2023_phys4601.pdf]]
|-
|-
| Plant Biology || On-Class (PBIO/BINF8350) || [[media: Introduction to HPC Using zcluster at GACRC PBIO-BINF8350 20160115.pdf]]
|PHYS8602 - Spring2023||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf]] ; [[Media:Gacrc_handout2023_phys8602.pdf]]
|-
|-
| Biochemistry and Molecular Biology || On-Class (BCMB8330) ||[[media: Introduction to HPC Using zcluster at GACRC BCMB8330 20160209 v2.pdf]]
|ILS GradFIRST course - Fall 2022||Out-Reach||[[Media:GACRC_overview_20220901-ILS.pdf]]
|-
|-
| Plant Biology - Bioinformatics Applications Fall 2016 || On-Class (PBIO4550) || [[media:Introduction to HPC Using zcluster at GACRC PBIO 4550 08182016.pdf]]
|FYOS1001 - Fall 2022||Out-Reach||[[Media:High_Performance_Computing_(HPC)_on_GACRC_Sapelo2_Cluster.pdf]]
|-
|-
| Bioinformatics - Essential Computing Skills for Biologists Fall 2016 || On-Class (BINF4005) || [[media:Introduction to HPC Using zcluster at GACRC BINF 4005 08312016.pdf]]
|CSP seminar - Fall 2022||Out-Reach||[[Media:GACRC_overview_20220830-CSP.pdf]]
|-
|CSP seminar - Fall 2022||Out-Reach||[[Media:Compile_and_Run_HPC_code_on_Sapelo2.pdf]]
|-
|Terry College IT - Spring2022||Out-Reach||[[Media:GACRC_overview_20220506-Terry.pdf]]
|-
|PHYS8601 - Spring2022||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf]]
|-
|PHYS4601/6601 - Spring2022||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf]] ; [[Media:Gacrc_handout2021_phys4601.pdf]]
|-
|PHYS8602 - Spring2021||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602-2021.pdf]] ; [[Media:Gacrc_handout2021_phys8602.pdf]]
|-
|GENE4220 - Fall2020||In-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop_GENE4220_Fall2020.pdf]]
|-
|College of Veterinary Medicine - Spring2020||Out-Reach (jlslab) ||[[Media:Using_GACRC_Sapelo2_Cluster-Advanced_Topics(1).pdf]]
|-
|Byod Data Center - Fall2019||In-Class (FYOS1001)||[[Media:High_Performance_Computing_(HPC)_on_Cluster.pdf]]
|-
|Department of Linguistics - Fall2019||In-class (LING6570)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop_LING6570_Part2.pdf]]
|-
|The Center for Simulational Physics - Fall2019 ||Out-Reach (Seminar Talk 20190820)||[[Media:Introduction_to_GACRC_Computing_Facility_-_Sapelo2_Cluster_CSP-Fall2019.pdf]]
|-
|The Center for Simulational Physics||In-Class (PHYS4601/6601)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf]] [[Media:Gacrc_handout2019_phys4601.pdf]]
|-
|The Center for Simulational Physics||In-Class (PHYS8601)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf]] [[Media:Gacrc_handout2020_phys8601.pdf]]
|-
|The Center for Simulational Physics ||In-Class (PHYS8602)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf]] [[Media:Gacrc_handout2019_phys8602.pdf]]
|-
|Food Science - Fall2018 ||In-Class (FYOS1001)||[[Media:High_Performance_Computing_(HPC)_on_Sapelo2_Cluster_at_GACRC.pdf]]
|-
|The Center for Simulational Physics - Summer2018||Out-Reach (Seminar Talk 20180821)||[[Media:Introduction_to_GACRC_Sapelo2_cluster.pdf]]
|-
| Miller plant science - Summer2018 ||Out-Reach (jlmlab)||[[Media:Introduction_to_GACRC_Sapelo2_cluster.pdf]]
|-
|Biochemistry and Molecular Biology - Spring2018||In-Class (BCMB8330)||[[Media:GACRC_zcluster_Class_Training_BCMB8330_Spring_2018.pdf]]
|-
| The Center for Simulational Physics - Summer2017||Out-Reach (Seminar Talk 20170831) ||[[Media:Introduction_on_HPC_Resources_at_the_GACRC.pdf]]
|-
|Computational Physics - Spring2017||In-class (PHYS4601/6601) ||[[Media:Phys4601.pdf]]
|-
|Computational Physics - Spring2017||In-class (PHYS8602)||[[Media:Phys8602.pdf]]
|-
|The Institute of Bioinformatics and the Quantitative Biology Consulting Group|| Out-Reach||[[Media:Introduction_to_HPC_Resources_at_GACRC_BBB_Talk_20151014.pdf]]
|-
|The Center for Simulational Physics|| Out-Reach (Seminar Talk 20160906)||[[Media:Introduction_to_Sapelo_Computing_Resources_at_GACRC_Workshop20160906.pdf]]
|-
|Microbiology||In-Class (MIBO8150) ||[[Media:Introduction_to_HPC_Resources_at_GACRC_MIBO8150_20160926.pdf]]
|-
|Statistics||In-Class (STAT8060)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_Workshop_STAT8060_20150826.pdf]]
|-
|Biochemistry and Molecular Biology||In-Class (BCMB8211) ||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BCMB8211_20160114.pdf]]
|-
|Plant Biology||In-Class (PBIO/BINF8350)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO-BINF8350_20160115.pdf]]
|-
|Plant Biology - Bioinformatics Applications Fall2016||In-Class (PBIO4550)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO_4550_08182016.pdf]]
|-
| Bioinformatics - Essential Computing Skills for Biologists Fall2016||In-Class (BINF4005)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BINF_4005_08312016.pdf]]
|-
|Computers in Experimental Genetics Fall2016||In-Class (GENE4220)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_GENE_4220_10192016.pdf]]
|-
|Statistics - Advanced Applications and Computing in R Fall2016||In-Class (STAT8330)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_STAT8330_11022016.pdf]]
|}
|}


'''NOTE:''' The slides may become outdated and you should always check GACRC Wiki for up to date information.
'''NOTE:''' The slides may become outdated and you should always check GACRC Wiki for up to date information.


==Past Sessions==
== Past Sessions ==
 
[[Pass Sessions in 2021]]
 
[[Past Sessions in 2020]]
 
[[Past Sessions in 2019]]
 
[[Past Sessions in 2018]]
 
[[Past Sessions in 2017]]


[[Past Sessions in 2016]]
[[Past Sessions in 2016]]


[[Past Sessions in 2015]]
[[Past Sessions in 2015]]

Latest revision as of 10:45, 13 November 2024

GACRC Training

The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.

NOTE: New users are required to attend a Sapelo2 cluster introductory training session and information about that will be sent once an account is requested.


Regular Training Announcement

In November 2024, the GACRC is hosting 7 training sessions (3 Linux basics and 3 Sapelo2 cluster new user trainings and 1 Using Sapelo2 Cluster at the GACRC, Part II training).

We will offer:

1. Linux training for Linux-inexperienced cluster new users (3 sessions)

2. Sapelo2 cluster new user training (3 sessions)

3. Using Sapelo2 Cluster at the GACRC, Part II (1 session)


In December 2024, the GACRC is hosting 7 training sessions (3 Linux basics and 3 Sapelo2 cluster new user trainings and 1 Using Sapelo2 Cluster at the GACRC, Part II training).

We will offer:

1. Linux training for Linux-inexperienced cluster new users (3 sessions)

2. Sapelo2 cluster new user training (3 sessions)

3. Using Sapelo2 Cluster at the GACRC, Part II (1 session)



Please Note: The training workshops will be offered remotely via Zoom Meeting. Detailed information on how to join the Zoom meeting will be sent to your UGA email account prior to each training session.

Event Schedule

Sapelo2 Cluster New User Training

Our Sapelo2 training consists of 1 hr 30 mins of instructional videos, followed by a 1 hr 30 min workshop.

Prerequisites:

  • Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.

Workshop Training Goals:

  • Understand the layout of Sapelo2
  • Understand the Sapelo2 file systems
  • Understand the Sapelo2 partitions
  • Understand the Sapelo2 software environment
  • Understand how to request computing resources and submit a computational batch job following the Sapelo2 cluster general workflow
  • Understand how to initiate an interactive job
  • Understand how to transfer files to and from the cluster
  • Understand how to get support from GACRC support team when you have any issues on cluster
Title Date/Time
Using Sapelo2 Cluster at the GACRC November 14th, Thursday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC November 20th, Wednesday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC December 5th, Thursday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC December 11th, Wednesday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC December 19th, Thursday, 2:00 PM - 4:00 PM

Linux Training for Linux-inexperienced Cluster New Users

The Sapelo2 High Performance Computing (HPC) cluster runs a headless Linux distribution as the operating system on each of its constituent nodes. The term headless refers to the fact that these nodes do not have a desktop graphical user interface (GUI) installed by default. Graphical desktop environments consume resources that analyses could otherwise use, so users employ a command-line interface (CLI) instead. To interact with these resources, users connect to a remote terminal via SSH and execute commands.

The Linux Training workshop provides hands-on practice of the fundamental Linux commands necessary to interact with HPC resources.

Prerequisite: Please watch the introductory videos on Linux, basic Linux terms, and Linux Paths and Directories (total ~17 minutes) before attending the training workshop.

Training Goals:

1. Understand fundamental concepts of Linux working environment (filesystem hierarchy, path, PATH, etc.)

2. Know how to use Linux common commands (ls, cd, pwd, cat, more, nano, mkdir, rm, cp, mv, etc.)

3. Understand what is Linux bash shell and know how to make a simple Linux script and run it in Linux environment

Title Date/Time
Use Linux on Cluster December 3rd, Tuesday, 1:00 PM - 3:00 PM
Use Linux on Cluster December 9th, Monday, 1:00 PM - 3:00 PM
Use Linux on Cluster December 17th, Tuesday, 1:00 PM - 3:00 PM

Using Sapelo2 Cluster at the GACRC, Part II

Prerequisites:

  • Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.
  • Sapelo2 cluster new user training. Fundamental HPC and Sapelo2 knowledge is required for this advanced Sapelo2 workshop.

Training Goals:

1. Learn about high-performance computing framework

2. Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?

3. How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?

4. How can I make my job run more efficiently (through the correct use of software and hardware)?

5. A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2

Title Date/Time
Using Sapelo2 Cluster at the GACRC, Part II November 15th, Friday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC, Part II December 13th, Friday, 2:00 PM - 4:00 PM

Python Basics

Prerequisite: No prerequisites

Training Goals:

1. Understand Python scientific modules and distributions

2. Understand Python general lexical conventions; Python built-in data types, like string, list, tuple, dictionary, etc.

3. Understand Python programming structures and procedural programming using functions

Title Date/Time
Python Basics I Not scheduled
Python Basics II Not scheduled

R Basics

Prerequisite: No prerequisites

Training Goals:

1. Understand fundamentals of R language, e.g. R general lexical conventions, data types, functions, and packages. Part 2 will introduce loops and functions.

2. Be able to manipulate and create data frames using built in functions and the dplyr package.

3. Interact with your file system and submit R code as a batch job to Sapelo 2.


Title Date/Time
R Basics I Not scheduled
R Basics II Not scheduled

Conda

Prerequisite: No prerequisites

Training Goals:

1. Understand fundamentals of conda environment

2. Use conda to create and configure your own virtual environments

3. Activate your environments to run python apps from your home directory on Sapelo2

Title Date/Time
Conda Basics Not scheduled


How to Register

Please Note, the training workshops Using Sapelo2 Cluster at the GACRC and Use Linux on Cluster are ONLY offered to new users who need computing user accounts on the GACRC Sapelo2 cluster, or any current users who have never attended the GACRC Sapelo2 cluster new user training before. Please ask your group PI/UGA faculty member to send us a request for you, using the GACRC User Account Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25839

If you want to attend Python Basics, R, and Conda basics training sessions, please send us a request using the GACRC Training Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25852 . In your request, please tell us which session(s) you want to attend.

The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC fundamental introduction, Linux introductory III (Linux working environment and utilities), Bioinfomatics applications on Sapelo cluster, Perl, R, C/C++/Fortran programming, etc., in the near future. We will announce those events when they are scheduled.

The GACRC Web Training page can be found at https://gacrc.uga.edu/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.

Topic Introduction

Title: Sap2test cluster migration training

Focus: Slurm queueing system, including Slurm job commands, job environment variables, and job submission headers, etc.

The new software environment on Sap2test

Other important topics related to Sap2test working environment


Title: Using Sapelo2 Cluster at the GACRC

Focus: Sapelo2 HPC cluster and computational batch job submission workflow

Cluster's storage environment

Computational queues on cluster

Software environment

How to submit computational batch jobs

Other tips and guidelines for users


Title: Using Sapelo2 Cluster at the GACRC, Part II

Focus: More topics on how to use Sapelo2 cluster

Learn about high-performance computing framework

Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?

How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?

How can I make my job run more efficiently (through the correct use of software and hardware)?

A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2


Title: Use Linux on Cluster

Focus: Linux OS fundamentals

Linux common commands, filesystem, and shell

Linux shell scripting basics

Common Linux utilities, e.g., grep, sed, find, sort, and awk, etc.

Linux Hands-on practice


Title: Python Basics I, II

Focus of I: Python language overview, scientific modules and distributions

Python general lexical conventions

Basic built-in data types, like string, list, tuple, dictionary, etc.

Focus of II: Programming structures: control flow and loop

Function: procedural programming with examples, lambda expression, factory function and generator


Title: R Basics I, II

Focus of I: R language overview,general lexical conventions, data types, functions, and packages.

Basic built-in data types, like string, numeric, list, dataframe etc. Using the dplyr package.

Focus of II: Programming structures: control flow, loops and functions

Title: Python on GACRC Sapelo2 Cluster

Focus: Install Python packages/modules in a user's home directory on Sapelo2 cluster

Python versions installed on Sapelo2

Python environment details on Sapelo2

How to know a Python package is installed or not on Sapelo2

How to install a Python package in user's home directory on Sapelo2


Title: Do It Yourself: Using Conda to create and run python environments to suit your computing needs effortlessly!

Focus: Use conda to create and configure your own python virtual environments; Activate your environments to run python apps from your home directory on Sapelo2

What is Conda and its environment

Conda on Sapelo2

Use conda to create and configure your own python virtual environments

Activate your environments to run python apps from your home directory on Sapelo2


Title: How to submit and run jobs efficiently and correctly on Sapelo2

Focus: Sapelo2 cluster general workflow and correct computing resource requesting

Overview of Sapelo2 cluster with reference tables and operational diagrams

Sapelo2 batch job submission workflow taking global scratch as job working space

How to request computing resources correctly

How to run pipeline tasks and what are advantages/disadvantages of different options

Sapelo2 cluster guideline and practical tips


Title: GACRC Storage Environment

Focus: Overview of Linux common commands related to file and folder operations

Overview of the storage enviornment of zcluster and Sapelo cluster at GACRC

How to transfer data between local and GACRC storage

New file transfer node xfer2 and how to use it to transfer data between zcluster and the new cluster

GACRC suggestions on good practices on GACRC storage, etc;


Title: NCBI Blast application on sapelo

Focus: Introduction to BLAST

BLAST job submission to sapelo

Advantages & Disadvantages: NCBI website vs run at sapelo.

Understand BLAST output

Troubleshooting the BLAST results


Title: NGS application overview at GACRC

Focus: Overview of Bioinformatics software available on HPC clusters at GACRC

It’s a brave new world – NGS and its Applications

Hardware, Software, Databases available at GACRC

NGS project: Logistics and resource considerations

Best practices, common mistakes, troubleshooting and getting help from GACRC


Title: Perl Language Basics I, II

Focus of I: Overview of Perl language,

Perl general scripting style

Perl fundamental data types

Focus of II: Program structure: control flow and loop

Perl subroutine

Perl I/O

Download

Sapelo2 Cluster Training

Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf

Sap2test Migration Training

Media:Migrating_to_Slurm_and_new_software_environment.pdf

Please note: To help users familiarize with Slurm and the test cluster environment, we have prepared some training videos that are available from the GACRC's Kaltura channel at https://kaltura.uga.edu/channel/GACRC/176125031 (login with MyID and password is required).

Teaching Cluster Training

Media:GACRC-Teaching-cluster-new-user-training-workshop_Fall2024.pdf

Linux Training for New Cluster Users

Media:Linux_Training_For_New_Users_Of_Cluster_Suchi_04252019.pdf

Python Basics

Media:Python_Language_Basics_I_v5.1.pdf
Media:Python_Language_Basics_II_v5.1.pdf
Media:Python_Basics_v6.1.pdf

R Basics

Media:R_Language_Basics_PowerPoint_v2.0.pdf
Media:R_Language_Basics_Document_v2.0.pdf
Media:R_Language_Basics_part_2_Powerpoint_v1.0.pdf
Media:R_Language_Basics_part_2_Document_v1.0.pdf

Perl Basics

Media:Perl_Language_Basics_I_Workshop_v1.pdf

Topical Sessions

Media:AI_Resources_on_the_GACRC_Sapelo2_Cluster.pdf
Media:Using_Sapelo2_Cluster_at_the_GACRC_Part_II_Rocky8.pdf
Media:Using_Conda_on_the_GACRC_Sap2test_cluster_v1.pdf
Media:Blast_Workshop_GACRC_02012017.pdf
Media:Next-Generation_Sequencing_Applications_at_GACRC_10282016.pdf

Out-Reach/On-Class Talk

Dept./Center/Institute Type Workshop PDF
Engineering FYOS - Fall 2024 In-Class Media:GACRC_overview_20240920-FYOS.pdf
CSP seminar - Fall 2024 Out-Reach Media:GACRC_overview_20240820-CSP.pdf
BCMB8330 - Spring2024 In-Class Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330_Spring2024.pdf
PHYS4601/6601 - Spring2024 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601-Spring2024.pdf ; Media:Gacrc_handout2024_phys4601.pdf
PHYS8601 - Spring2024 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601-Spring2024.pdf ; Media:Gacrc_handout2024_phys8601.pdf
CSP seminar - Fall 2023 Out-Reach Media:GACRC_overview_20230822-CSP.pdf
BCMB8330 - Spring2023 In-Class Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330.pdf
PHYS4601/6601 - Spring2023 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf ; Media:Gacrc_handout2023_phys4601.pdf
PHYS8602 - Spring2023 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf ; Media:Gacrc_handout2023_phys8602.pdf
ILS GradFIRST course - Fall 2022 Out-Reach Media:GACRC_overview_20220901-ILS.pdf
FYOS1001 - Fall 2022 Out-Reach Media:High_Performance_Computing_(HPC)_on_GACRC_Sapelo2_Cluster.pdf
CSP seminar - Fall 2022 Out-Reach Media:GACRC_overview_20220830-CSP.pdf
CSP seminar - Fall 2022 Out-Reach Media:Compile_and_Run_HPC_code_on_Sapelo2.pdf
Terry College IT - Spring2022 Out-Reach Media:GACRC_overview_20220506-Terry.pdf
PHYS8601 - Spring2022 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf
PHYS4601/6601 - Spring2022 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf ; Media:Gacrc_handout2021_phys4601.pdf
PHYS8602 - Spring2021 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602-2021.pdf ; Media:Gacrc_handout2021_phys8602.pdf
GENE4220 - Fall2020 In-Class Media:GACRC_Teaching_cluster_new_user_training_workshop_GENE4220_Fall2020.pdf
College of Veterinary Medicine - Spring2020 Out-Reach (jlslab) Media:Using_GACRC_Sapelo2_Cluster-Advanced_Topics(1).pdf
Byod Data Center - Fall2019 In-Class (FYOS1001) Media:High_Performance_Computing_(HPC)_on_Cluster.pdf
Department of Linguistics - Fall2019 In-class (LING6570) Media:GACRC_Teaching_cluster_new_user_training_workshop_LING6570_Part2.pdf
The Center for Simulational Physics - Fall2019 Out-Reach (Seminar Talk 20190820) Media:Introduction_to_GACRC_Computing_Facility_-_Sapelo2_Cluster_CSP-Fall2019.pdf
The Center for Simulational Physics In-Class (PHYS4601/6601) Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf Media:Gacrc_handout2019_phys4601.pdf
The Center for Simulational Physics In-Class (PHYS8601) Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf Media:Gacrc_handout2020_phys8601.pdf
The Center for Simulational Physics In-Class (PHYS8602) Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf Media:Gacrc_handout2019_phys8602.pdf
Food Science - Fall2018 In-Class (FYOS1001) Media:High_Performance_Computing_(HPC)_on_Sapelo2_Cluster_at_GACRC.pdf
The Center for Simulational Physics - Summer2018 Out-Reach (Seminar Talk 20180821) Media:Introduction_to_GACRC_Sapelo2_cluster.pdf
Miller plant science - Summer2018 Out-Reach (jlmlab) Media:Introduction_to_GACRC_Sapelo2_cluster.pdf
Biochemistry and Molecular Biology - Spring2018 In-Class (BCMB8330) Media:GACRC_zcluster_Class_Training_BCMB8330_Spring_2018.pdf
The Center for Simulational Physics - Summer2017 Out-Reach (Seminar Talk 20170831) Media:Introduction_on_HPC_Resources_at_the_GACRC.pdf
Computational Physics - Spring2017 In-class (PHYS4601/6601) Media:Phys4601.pdf
Computational Physics - Spring2017 In-class (PHYS8602) Media:Phys8602.pdf
The Institute of Bioinformatics and the Quantitative Biology Consulting Group Out-Reach Media:Introduction_to_HPC_Resources_at_GACRC_BBB_Talk_20151014.pdf
The Center for Simulational Physics Out-Reach (Seminar Talk 20160906) Media:Introduction_to_Sapelo_Computing_Resources_at_GACRC_Workshop20160906.pdf
Microbiology In-Class (MIBO8150) Media:Introduction_to_HPC_Resources_at_GACRC_MIBO8150_20160926.pdf
Statistics In-Class (STAT8060) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_Workshop_STAT8060_20150826.pdf
Biochemistry and Molecular Biology In-Class (BCMB8211) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BCMB8211_20160114.pdf
Plant Biology In-Class (PBIO/BINF8350) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO-BINF8350_20160115.pdf
Plant Biology - Bioinformatics Applications Fall2016 In-Class (PBIO4550) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO_4550_08182016.pdf
Bioinformatics - Essential Computing Skills for Biologists Fall2016 In-Class (BINF4005) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BINF_4005_08312016.pdf
Computers in Experimental Genetics Fall2016 In-Class (GENE4220) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_GENE_4220_10192016.pdf
Statistics - Advanced Applications and Computing in R Fall2016 In-Class (STAT8330) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_STAT8330_11022016.pdf

NOTE: The slides may become outdated and you should always check GACRC Wiki for up to date information.

Past Sessions

Pass Sessions in 2021

Past Sessions in 2020

Past Sessions in 2019

Past Sessions in 2018

Past Sessions in 2017

Past Sessions in 2016

Past Sessions in 2015

Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Training&oldid=22169"