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The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.  
The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.  


'''NOTE: New users are required to attend an introductory training session and information about that will be sent once an account is requested.'''
'''NOTE: New users are required to attend a Sapelo2 cluster introductory training session and information about that will be sent once an account is requested.'''




==Event Announcement==
==Regular Training Announcement==
In '''May 2024''', the GACRC is hosting 8 training sessions (4 Linux basics and 4 Sapelo2 cluster new user trainings).


The GACRC is going to host '''thirteen''' regular training sessions in '''September''' 2016. These sessions will provide introductions to the GACRC Linux HPC clusters, Linux basics, NCBI Blast, and Python language basics. We are also going to co-host '''one''' long session (3 hours) on R language introduction with Dr. James Monogan from the Department of Political Science at the UGA. We offer:
We will offer:


1. Four Sapelo and one zcluster new user training sessions
1. Linux training for Linux-inexperienced cluster new users (4 sessions)


2. Two Linux-I and two Linux-II introductory sessions
2. Sapelo2 cluster new user training (4 sessions)


3. Two Python sessions (I and II)


4. One topical session on NCBI Blast


5. One topical session on how to submit and run jobs efficiently and correctly on Sapelo (new topical session)


6. One long session (3 hours) on R language introduction (topic introduction: https://wiki.gacrc.uga.edu/wiki/Training#Topic_Introduction)


'''Please Note:''' The training workshops will be offered remotely via Zoom Meeting. Detailed information on how to join the Zoom meeting will be sent to your UGA email account prior to each training session.


==Event Schedule==
===Sapelo2 Cluster New User Training===


The GACRC is going to host sixteen training sessions in '''October''' 2016. These sessions will provide introductions to the GACRC Linux HPC clusters, Linux basics, Python language basics and GACRC Python computing resources, NCBI Blast, and NGS data processing tools. We offer:
Our Sapelo2 training consists of 1 hr 30 mins of instructional videos, followed by a 1 hr 30 min workshop.  '''The instructional videos are required to be viewed prior to the training workshop, and they can be found [https://kaltura.uga.edu/playlist/dedicated/176125031/1_4o12v8b4/1_9zi68rgi here]'''


1. Four Sapelo and two zcluster new user training sessions  ('''mandatory''' for new user account creation)
'''Prerequisites:'''  


2. Two Linux-I and two Linux-II introductory sessions
* Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.


3. Two Python sessions (I and II)
'''Video Playlist Training Goals:'''


4. One topical session on NCBI Blast application on zcluster
* Understand the layout of Sapelo2


5. One topical session on NGS data processing tools on zcluster and Sapelo (new topic)
* Understand the Sapelo2 file systems


6. One topical session on How to submit and run jobs efficiently and correctly on Sapelo
* Understand the Sapelo2 partitions
 
7. One topical session on Python on GACRC Computing Resources (new topic)


* Understand the Sapelo2 software environment


====Training Location:====
'''Workshop Training Goals:'''


Davison Life Sciences Complex (Life Science Building), Room C128
* Understand how to request computing resources and submit a computational batch job following the Sapelo2 cluster general workflow


120 East Green Street, Athens, GA 30602
* Understand how to initiate an interactive job


==Event Schedule==
* Understand how to transfer files to and from the cluster


===Sapelo and zcluster New User Training===
* Understand how to get support from GACRC support team when you have any issues on cluster


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{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
! scope="col" | Title
! scope="col" |Title
! scope="col" | Date/Time
! scope="col" |Date/Time
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || September 27th, Tuesday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|April 17th, Wednesday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 4th, Tuesday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|May 9th, Thursday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using zcluster at GACRC || October 6th, Thursday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|May 15th, Wednesday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 14th, Friday, 10:00 AM - 11:30 AM
|Using Sapelo2 Cluster at the GACRC
|May 23rd, Thursday, 2:00 PM - 4:00 PM
|-
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 18th, Tuesday, 2:00 PM - 3:30 PM
|Using Sapelo2 Cluster at the GACRC
|-
|May 31st, Friday, 2:00 PM - 4:00 PM
| Introduction to HPC Using zcluster at GACRC || October 20th, Thursday, 2:00 PM - 3:30 PM
|-
| Introduction to HPC Using Sapelo Cluster at GACRC || October 28th, Friday, 10:00 AM - 11:30 AM
|-
|-
|}
|}


===Linux Basics and Hands-on===
===Linux Training for Linux-inexperienced Cluster New Users===
Please watch all videos from the [https://kaltura.uga.edu/media/t/1_81u2kfi2 Linux Basics] playlist '''before attending the training workshop'''.
 
'''Prerequisite:''' The Linux Training workshop consists of hands-on practice of the concepts covered in the [https://kaltura.uga.edu/media/t/1_81u2kfi2 Linux Basics] playlist, which must be viewed prior to attending.
 
'''Training Goals:'''
 
1. Understand fundamental concepts of Linux working environment (filesystem hierarchy, path, PATH, etc.) 
 
2. Know how to use Linux common commands (ls, cd, pwd, cat, more, nano, mkdir, rm, cp, mv, etc.)


{| width="100%" border="1" cellspacing="0" cellpadding="2" align="center" class="wikitable unsortable"
3. Understand what is Linux bash shell and know how to make a simple Linux script and run it in Linux environment
 
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
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! scope="col" | Title
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| Introduction to Linux Basics II || September 29th, Thursday, 2:00 PM - 3:30 PM
|Use Linux on Cluster
|May 7th, Tuesday, 1:00 PM - 3:00 PM
|-
|-
| Introduction to Linux Basics I || October 7th, Friday, 10:00 AM - 11:30 AM
|Use Linux on Cluster
|May 13th, Monday, 1:00 PM - 3:00 PM
|-
|-
| Introduction to Linux Basics II || October 7th, Friday, 11:30 AM - 1:00 PM
|Use Linux on Cluster
|May 21st, Tuesday, 1:00 PM - 3:00 PM
|-
|-
| Introduction to Linux Basics I || October 13th, Thursday, 2:00 PM - 3:30 PM
|Use Linux on Cluster
|-
|May 29th, Wednesday, 1:00 PM - 3:00 PM
| Introduction to Linux Basics II || October 25th, Tuesday, 2:00 PM - 3:30 PM
|-
|-
|}
|}


===Python Basics===
===Using Sapelo2 Cluster at the GACRC, Part II===
'''Prerequisites:'''
* Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.
* Sapelo2 cluster new user training.  Fundamental HPC and Sapelo2 knowledge is required for this advanced Sapelo2 workshop.
 
'''Training Goals:'''
 
1. Learn about high-performance computing framework
 
2. Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?
 
3. How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?
 
4. How can I make my job run more efficiently (through the correct use of software and hardware)?
 
5. A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2


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! scope="col" | Title
! scope="col" | Title
! scope="col" | Date/Time
! scope="col" |Date/Time
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| Python Language Basics I || October 21st, Friday, 10:00 AM - 11:30 AM
|Using Sapelo2 Cluster at the GACRC, Part II
|-
|Not scheduled                                         
| Python Language Basics II || October 21st, Friday, 11:30 AM - 1:00 PM
|-
|-
|}
|}


===Topical Sessions===
===Python Basics===
'''Prerequisite:''' No prerequisites
 
'''Training Goals:'''
 
1. Understand Python scientific modules and distributions
 
2. Understand Python general lexical conventions; Python built-in data types, like string, list, tuple, dictionary, etc.


{| width="100%" border="1" cellspacing="0" cellpadding="2" align="center" class="wikitable unsortable"
3. Understand Python programming structures and procedural programming using functions
 
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
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|-
! scope="col" | Title
! scope="col" | Title
! scope="col" | Date/Time
! scope="col" |Date/Time
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| How to submit and run jobs efficiently and correctly on Sapelo || September 30th, Friday, 10:00 AM - 11:30 AM
|Python Basics I||Not scheduled
|-
|-
| How to submit and run jobs efficiently and correctly on Sapelo || October 11th, Tuesday, 2:00 PM - 3:30 PM
|Python Basics II||Not scheduled
|-
|}
 
===R Basics===
'''Prerequisite:''' No prerequisites
 
'''Training Goals:'''
 
1. Understand fundamentals of R language, e.g. R general lexical conventions, data types, functions, and packages. Part 2 will introduce loops and functions.
 
2. Be able to manipulate and create data frames using built in functions and the dplyr package.
 
3. Interact with your file system and submit R code as a batch job to Sapelo 2. 
 
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|-
|-
| How to run NCBI Blast on zcluster at GACRC || October 14th, Friday, 11:30 AM - 1:00 PM
! scope="col" |Title
! scope="col" |Date/Time
|-
|-
| Python on GACRC Computing Resources || October 27th, Thursday, 2:00 PM - 3:30 PM
| R Basics I||Not scheduled
|-
|-
| NGS data processing tools on zcluster and Sapelo || October 28th, Friday, 11:30 AM - 1:00 PM
|R Basics II||Not scheduled
|-
|-
|}
|}


===Co-hosting R long session===
===Conda===
'''Prerequisite:''' No prerequisites
 
'''Training Goals:'''
 
1. Understand fundamentals of conda environment
 
2. Use conda to create and configure your own virtual environments
 
3. Activate your environments to run python apps from your home directory on Sapelo2


{| width="100%" border="1" cellspacing="0" cellpadding="2" align="center" class="wikitable unsortable"
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|-
|-
! scope="col" | Title
! scope="col" |Title
! scope="col" | Date/Time
! scope="col" |Date/Time
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|-
| R Language Introduction || September 23rd, Friday, 10:00 AM - 1:00 PM
|Conda Basics||Not scheduled
|-
|-
|}
|}




'''Who Should Attend: '''GACRC new cluster Sapelo users and zcluster users, or researchers who are interested in learning about the GACRC computing resources, Linux basics (Linux OS, file system, shell, common commands, Linux scripting), and scientific programming (Python, C/C++, Fortran, Perl) etc..
==How to Register==
 
'''Please Note''', the training workshops '''Using Sapelo2 Cluster at the GACRC''' and '''Use Linux on Cluster''' are '''ONLY''' offered to '''new users''' who need computing user accounts on the GACRC Sapelo2 cluster, or any current users who have never attended the GACRC Sapelo2 cluster new user training before. Please ask your group PI/UGA faculty member to send us a request for you, using the GACRC User Account Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25839
If you want to attend '''Python Basics''', '''R''', and '''Conda basics''' training sessions, please send us a request using the GACRC Training Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25852 . In your request, please tell us which session(s) you want to attend.


The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC fundamental introduction, Linux introductory III (Linux working environment and utilities), Bioinfomatics applications on Sapelo cluster, Perl, R, C/C++/Fortran programming, etc., in the near future. We will announce those events when they are scheduled.


==How to Register==
The GACRC Web Training page can be found at https://gacrc.uga.edu/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.


If you would like to attend, please respond by email to: '''pakala@uga.edu'''. Also please tell us which session(s) you want to attend.
== Topic Introduction==


We have '''25''' seats in the lab room, so we have a 25 user/workshop limit. Please respond at your earliest convenience to register to guarantee your seat. You are welcome and encouraged to attend those workshops to learn about how to work with the HPC clusters at the GACRC.
Title: '''Sap2test cluster migration training'''


Focus:  Slurm queueing system, including Slurm job commands, job environment variables, and job submission headers, etc.


The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC introduction, Linux introductory III (Linux working environment and utilities), Bioinfomatics applications, Python language III, Python on GACRC computing resources, C/C++/Fortran programming, etc., in the near future. We will announce those events when they are scheduled.
The new software environment on Sap2test


The GACRC Web Training page can be found at http://gacrc.uga.edu/help/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.
Other important topics related to Sap2test working environment


==Topic Introduction==


Title: '''Introduction to HPC Using the New Cluster at GACRC'''
Title: '''Using Sapelo2 Cluster at the GACRC'''


Focus:
Focus: Sapelo2 HPC cluster and computational batch job submission workflow


What's the new cluster at GACRC
Cluster's storage environment


New cluster's current computing resources
Computational queues on cluster


New cluster software environment
Software environment


How to operate with the new cluster
How to submit computational batch jobs


How to work with the new cluster, e.g., how to run interactive jobs; how to run batch jobs; how to make job submission scripts and request computing resources; how to check job status, etc.
Other tips and guidelines for users
   
   


Title: '''Introduction to HPC Using zcluster at GACRC'''
Title: '''Using Sapelo2 Cluster at the GACRC, Part II'''
 
Focus: More topics on how to use Sapelo2 cluster
 
Learn about high-performance computing framework
 
Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?
 
How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?
 
How can I make my job run more efficiently (through the correct use of software and hardware)?
 
A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2
 
 
 
Title: '''Use Linux on Cluster'''
 
Focus: Linux OS fundamentals
 
Linux common commands, filesystem, and shell
 
Linux shell scripting basics
 
Common Linux utilities, e.g., grep, sed, find, sort, and awk, etc.
 
Linux Hands-on practice


Focus:


What's zcluster at GACRC
Title: '''Python Basics I, II'''


zcluster current computing resources
Focus of I: Python language overview, scientific modules and distributions


zcluster software environment
Python general lexical conventions


How to work with zcluster, e.g., how to run interactive jobs; how to run batch jobs and request computing resources; how to make job submission scripts; how to check job status, etc.
Basic built-in data types, like string, list, tuple, dictionary, etc.


Focus of II: Programming structures: control flow and loop


Title: '''Introduction to Linux Basics I and II'''
Function: procedural programming with examples, lambda expression, factory function and generator


Focus of I:


Linux OS and brief history
Title: '''R Basics I, II'''


Linux command, filesystem, and shell
Focus of I: R language overview,general lexical conventions, data types, functions, and packages.


Linux common commands, etc.
Basic built-in data types, like string, numeric, list, dataframe etc. Using the dplyr package.


Focus of II:
Focus of II: Programming structures: control flow, loops and functions


Linux shell
Title: '''Python on GACRC Sapelo2 Cluster'''


Common practices on Linux shell scripting
Focus: Install Python packages/modules in a user's home directory on Sapelo2 cluster


Common Linux utilities, e.g., sort, find, grep, awk, and sed etc.
Python versions installed on Sapelo2


Python environment details on Sapelo2


Title: '''Linux Hands-on Practice Session (Basic Linux knowledge required)'''
How to know a Python package is installed or not on Sapelo2


Focus:
How to install a Python package in user's home directory on Sapelo2


Hands-on practice on Linux common commands and shell scripting with common Linux utilities, e.g., sort, find, grep, awk, and sed etc.


Hands-on practice on the work flow of job submission on zcluster with make_escratch, qsub, qstat,and qdel etc.
Title: '''Do It Yourself: Using Conda to create and run python environments to suit your computing needs effortlessly!'''


Focus: Use conda to create and configure your own python virtual environments; Activate your environments to run python apps from your home directory on Sapelo2


Title: '''Python Language Basics I, II, and III'''
What is Conda and its environment


Focus of I:
Conda on Sapelo2


Overview of Python language, scientific modules and distributions
Use conda to create and configure your own python virtual environments


General Lexical conventions
Activate your environments to run python apps from your home directory on Sapelo2


Basic built-in data types


Focus of II:
Title: '''How to submit and run jobs efficiently and correctly on Sapelo2'''


Program structure: control flow and loop
Focus: Sapelo2 cluster general workflow and correct computing resource requesting


Function: procedural and functional programming with examples
Overview of Sapelo2 cluster with reference tables and operational diagrams


Python Class
Sapelo2 batch job submission workflow taking global scratch as job working space


Focus of III:
How to request computing resources correctly


Python modules and importing
How to run pipeline tasks and what are advantages/disadvantages of different options


Python Package and usage
Sapelo2 cluster guideline and practical tips




Title: '''GACRC Storage Environment'''
Title: '''GACRC Storage Environment'''


Focus:
Focus: Overview of Linux common commands related to file and folder operations
 
Overview of Linux common commands related to file and folder operations


Overview of the storage enviornment of zcluster and the new cluster at GACRC
Overview of the storage enviornment of zcluster and Sapelo cluster at GACRC


How to transfer data between local and GACRC storage
How to transfer data between local and GACRC storage
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Title: '''Software installation on zcluster'''
Title: '''NCBI Blast application on sapelo'''


Focus:
Focus: Introduction to BLAST


Current status of software on zcluster; What GACRC have now and what should users install
BLAST job submission to sapelo


How to obtain, install, organize software by users; What about databases
Advantages & Disadvantages: NCBI website vs run at sapelo.


How to validate the software installation
Understand BLAST output


How to trouble shoot installation, software errors, script errors, data errors, format errors, etc.
Troubleshooting the BLAST results


How to get help from GACRC and Common problems/mistakes


Title: '''NGS application overview at GACRC'''


Title: '''NCBI Blast application on zcluster'''
Focus: Overview of Bioinformatics software available on HPC clusters at GACRC


Focus:
It’s a brave new world – NGS and its Applications 


Introduction to BLAST
Hardware, Software, Databases available at GACRC


BLAST job submission to zcluster
NGS project: Logistics and resource considerations


Advantages & Disadvantages: NCBI website vs run at zcluster.
Best practices, common mistakes, troubleshooting and getting help from GACRC


Understand BLAST output


Troubleshooting the BLAST results
Title: '''Perl Language Basics I, II'''


Focus of I: Overview of Perl language,


Title: '''R Language Introduction'''
Perl general scripting style


Presenter: Dr. James Monogan (Department of Political Science, University of Georgia)
Perl fundamental data types


Focus:
Focus of II: Program structure: control flow and loop


Common general topics about R language
Perl subroutine


Description:
Perl I/O


This short course will introduce users to the program R and how to use it for data analysis.
==Download==


Topics covered in the 3 hour session will include data management, drawing graphs, and some basic statistics.
====Sapelo2 Cluster Training====


Please download a reference book suggested by the presenter ahead of time (free if downloaded on the university network) from: http://link.springer.com/book/10.1007/978-3-319-23446-5.
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
|[[Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf]]
|-
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====Sap2test Migration Training====


==Download==
{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
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|[[Media:Migrating_to_Slurm_and_new_software_environment.pdf]]
|}


'''Please note:''' To help users familiarize with Slurm and the test cluster environment, we have prepared some training videos that are available from the '''GACRC's Kaltura channel''' at
https://kaltura.uga.edu/channel/GACRC/176125031 (login with MyID and password is required).


====Sapelo and zcluster New User Training====
==== Teaching Cluster Training====


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|-
|-
| [[media: Introduction to HPC Using Sapelo Cluster at GACRC v11.pdf]]
|[[Media:GACRC-Teaching-cluster-new-user-training-workshop_Spring2024.pdf]]
|-
|-
| [[media: Introduction to HPC Using zcluster at GACRC Workshop v8.pdf]]
|}
 
====Linux Training for New Cluster Users====
 
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|-
|-
| [[media: Introduction to HPC Using zcluster at GACRC Workshop Pakala 09152016.pdf ]]
|[[Media:Linux_Training_For_New_Users_Of_Cluster_Suchi_04252019.pdf]]
|-
|-
|}
|}


====Linux Basics and Hands-on====
==== Python Basics====


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{| class="wikitable unsortable" width="100%" border="1" cellspacing="0" cellpadding="2" align="center"
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| [[media: Introduction to Linux Basics Part-I Workshop20160113 v3.pdf]]
|[[Media:Python_Language_Basics_I_v5.1.pdf]]
|-
|-
| [[media: Introduction to Linux Basics Part-II Workshop20151130 v2.pdf]]
|[[Media:Python_Language_Basics_II_v5.1.pdf]]
|-
|-
| [[media: Linux Hands-on Practice 20160120.pdf]]
|[[Media:Python_Basics_v6.1.pdf]]
|-
|-
|}
====R Basics====
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|-
| [[media: Introduction to Linux Basics Part1 09062016.pdf ]]
|[[Media:R Language Basics PowerPoint v2.0.1.pdf|Media:R_Language_Basics_PowerPoint_v2.0.pdf]]
|-
|-
|[[Media:R_Language_Basics_Document_v2.0.pdf]]
|-
|-
| [[media: Introduction to Linux Basics Part2 09092016.pdf ]]
|[[Media:R_Language_Basics_part_2_Powerpoint_v1.0.pdf]]
|-
|[[Media:R_Language_Basics_part_2_Document_v1.0.pdf]]
|-
|-
|}
|}


====Python Basics====
====Perl Basics====


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|-
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| [[media: Python Language Basics I Workshop20160328 v4.pdf]]
|[[Media:Perl_Language_Basics_I_Workshop_v1.pdf]]
|-
| [[media: Python Language Basics II Workshop20160425 v1.pdf]]
|-
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====Topical Sessions====
====Topical Sessions====


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| [[Media:Using_Sapelo2_Cluster_at_the_GACRC_Part_II_Rocky8.pdf]]
|-
|-
| [[media: Introduction to GACRC Storage Environment Workshop20160427 v3.pdf]]
| [[Media:Using_Conda_on_the_GACRC_Sap2test_cluster_v1.pdf]]
|-
|-
| [[media: Software installation on zcluster.pdf]]
|[[Media:Blast_Workshop_GACRC_02012017.pdf]]
|-
|-
| [[media: Blast Workshop GACRC 02292016.pdf ]]
|[[Media:Next-Generation_Sequencing_Applications_at_GACRC_10282016.pdf]]
|-
|-
|}
|}


====Out-Reach/On-Class Talk====
==== Out-Reach/On-Class Talk====


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|-
! scope="col" | Dept./Center/Institute
! scope="col" | Dept./Center/Institute
! scope="col" | Type
! scope="col" | Type
! scope="col" | Workshop PDF
! scope="col" |Workshop PDF
|-
| BCMB8330 - Spring2024||On-Class||[[Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330_Spring2024.pdf]]
|-
|PHYS4601/6601 - Spring2024||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601-Spring2024.pdf]] ; [[Media:Gacrc_handout2024_phys4601.pdf]]
|-
|PHYS8601 - Spring2024||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601-Spring2024.pdf]] ; [[Media:Gacrc_handout2024_phys8601.pdf]]
|-
|CSP seminar - Fall 2023||Out-Reach||[[Media:GACRC_overview_20230822-CSP.pdf]]
|-
|BCMB8330 - Spring2023||On-Class||[[Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330.pdf]]
|-
|PHYS4601/6601 - Spring2023||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf]] ; [[Media:Gacrc_handout2023_phys4601.pdf]]
|-
|PHYS8602 - Spring2023||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf]] ; [[Media:Gacrc_handout2023_phys8602.pdf]]
|-
|ILS GradFIRST course - Fall 2022||Out-Reach||[[Media:GACRC_overview_20220901-ILS.pdf]]
|-
|FYOS1001 - Fall 2022||Out-Reach||[[Media:High_Performance_Computing_(HPC)_on_GACRC_Sapelo2_Cluster.pdf]]
|-
|CSP seminar - Fall 2022||Out-Reach||[[Media:GACRC_overview_20220830-CSP.pdf]]
|-
|CSP seminar - Fall 2022||Out-Reach||[[Media:Compile_and_Run_HPC_code_on_Sapelo2.pdf]]
|-
|Terry College IT - Spring2022||Out-Reach||[[Media:GACRC_overview_20220506-Terry.pdf]]
|-
|PHYS8601 - Spring2022||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf]]
|-
|PHYS4601/6601 - Spring2022||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf]] ; [[Media:Gacrc_handout2021_phys4601.pdf]]
|-
|PHYS8602 - Spring2021||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602-2021.pdf]] ; [[Media:Gacrc_handout2021_phys8602.pdf]]
|-
|GENE4220 - Fall2020||On-Class||[[Media:GACRC_Teaching_cluster_new_user_training_workshop_GENE4220_Fall2020.pdf]]
|-
|College of Veterinary Medicine - Spring2020||Out-Reach (jlslab) ||[[Media:Using_GACRC_Sapelo2_Cluster-Advanced_Topics(1).pdf]]
|-
|Byod Data Center - Fall2019||On-Class (FYOS1001)||[[Media:High_Performance_Computing_(HPC)_on_Cluster.pdf]]
|-
|Department of Linguistics - Fall2019||On-class (LING6570)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop_LING6570_Part2.pdf]]
|-
|The Center for Simulational Physics - Fall2019 ||Out-Reach (Seminar Talk 20190820)||[[Media:Introduction_to_GACRC_Computing_Facility_-_Sapelo2_Cluster_CSP-Fall2019.pdf]]
|-
|The Center for Simulational Physics||On-Class (PHYS4601/6601)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf]] [[Media:Gacrc_handout2019_phys4601.pdf]]
|-
|The Center for Simulational Physics||On-Class (PHYS8601)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf]] [[Media:Gacrc_handout2020_phys8601.pdf]]
|-
|The Center for Simulational Physics ||On-Class (PHYS8602)||[[Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf]] [[Media:Gacrc_handout2019_phys8602.pdf]]
|-
|Food Science - Fall2018 ||On-Class (FYOS1001)||[[Media:High_Performance_Computing_(HPC)_on_Sapelo2_Cluster_at_GACRC.pdf]]
|-
|The Center for Simulational Physics - Summer2018||Out-Reach (Seminar Talk 20180821)||[[Media:Introduction_to_GACRC_Sapelo2_cluster.pdf]]
|-
| Miller plant science - Summer2018 ||Out-Reach (jlmlab)||[[Media:Introduction_to_GACRC_Sapelo2_cluster.pdf]]
|-
|Biochemistry and Molecular Biology - Spring2018||On-Class (BCMB8330)||[[Media:GACRC_zcluster_Class_Training_BCMB8330_Spring_2018.pdf]]
|-
| The Center for Simulational Physics - Summer2017||Out-Reach (Seminar Talk 20170831) ||[[Media:Introduction_on_HPC_Resources_at_the_GACRC.pdf]]
|-
|Computational Physics - Spring2017||On-class (PHYS4601/6601) ||[[Media:Phys4601.pdf]]
|-
|Computational Physics - Spring2017||On-class (PHYS8602)||[[Media:Phys8602.pdf]]
|-
|The Institute of Bioinformatics and the Quantitative Biology Consulting Group|| Out-Reach||[[Media:Introduction_to_HPC_Resources_at_GACRC_BBB_Talk_20151014.pdf]]
|-
|-
| The Institute of Bioinformatics and the Quantitative Biology Consulting Group || Out-Reach || [[media: Introduction to HPC Resources at GACRC BBB Talk 20151014.pdf]]
|The Center for Simulational Physics|| Out-Reach (Seminar Talk 20160906)||[[Media:Introduction_to_Sapelo_Computing_Resources_at_GACRC_Workshop20160906.pdf]]
|-
|-
| The Center for Simulational Physics || Out-Reach || [[media: Introduction to Sapelo Computing Resources at GACRC Workshop20160906.pdf]]
|Microbiology||On-Class (MIBO8150) ||[[Media:Introduction_to_HPC_Resources_at_GACRC_MIBO8150_20160926.pdf]]
|-
|-
| Microbiology || On-Class (MIBO8150) || [[media: Introduction to HPC Resources at GACRC MIBO8150 20151007.pdf]]
|Statistics||On-Class (STAT8060)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_Workshop_STAT8060_20150826.pdf]]
|-
|-
| Statistics || On-Class (STAT8060) || [[media: Introduction to HPC Using zcluster at GACRC Workshop STAT8060 20150826.pdf]]
|Biochemistry and Molecular Biology||On-Class (BCMB8211) ||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BCMB8211_20160114.pdf]]
|-
|-
| Biochemistry and Molecular Biology || On-Class (BCMB8211) || [[media: Introduction to HPC Using zcluster at GACRC BCMB8211 20160114.pdf]]
|Plant Biology||On-Class (PBIO/BINF8350)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO-BINF8350_20160115.pdf]]
|-
|-
| Plant Biology || On-Class (PBIO/BINF8350) || [[media: Introduction to HPC Using zcluster at GACRC PBIO-BINF8350 20160115.pdf]]
|Plant Biology - Bioinformatics Applications Fall2016||On-Class (PBIO4550)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO_4550_08182016.pdf]]
|-
|-
| Biochemistry and Molecular Biology || On-Class (BCMB8330) ||[[media: Introduction to HPC Using zcluster at GACRC BCMB8330 20160209 v2.pdf]]
| Bioinformatics - Essential Computing Skills for Biologists Fall2016||On-Class (BINF4005)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BINF_4005_08312016.pdf]]
|-
|-
| Plant Biology - Bioinformatics Applications Fall 2016 || On-Class (PBIO4550) || [[media:Introduction to HPC Using zcluster at GACRC PBIO 4550 08182016.pdf]]
|Computers in Experimental Genetics Fall2016||On-Class (GENE4220)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_GENE_4220_10192016.pdf]]
|-
|-
| Bioinformatics - Essential Computing Skills for Biologists Fall 2016 || On-Class (BINF4005) || [[media:Introduction to HPC Using zcluster at GACRC BINF 4005 08312016.pdf]]
|Statistics - Advanced Applications and Computing in R Fall2016||On-Class (STAT8330)||[[Media:Introduction_to_HPC_Using_zcluster_at_GACRC_STAT8330_11022016.pdf]]
|}
|}


'''NOTE:''' The slides may become outdated and you should always check GACRC Wiki for up to date information.
'''NOTE:''' The slides may become outdated and you should always check GACRC Wiki for up to date information.


==Past Sessions==
== Past Sessions ==
 
[[Pass Sessions in 2021]]
 
[[Past Sessions in 2020]]
 
[[Past Sessions in 2019]]
 
[[Past Sessions in 2018]]
 
[[Past Sessions in 2017]]


[[Past Sessions in 2016]]
[[Past Sessions in 2016]]


[[Past Sessions in 2015]]
[[Past Sessions in 2015]]

Revision as of 09:40, 15 April 2024

GACRC Training

The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.

NOTE: New users are required to attend a Sapelo2 cluster introductory training session and information about that will be sent once an account is requested.


Regular Training Announcement

In May 2024, the GACRC is hosting 8 training sessions (4 Linux basics and 4 Sapelo2 cluster new user trainings).

We will offer:

1. Linux training for Linux-inexperienced cluster new users (4 sessions)

2. Sapelo2 cluster new user training (4 sessions)



Please Note: The training workshops will be offered remotely via Zoom Meeting. Detailed information on how to join the Zoom meeting will be sent to your UGA email account prior to each training session.

Event Schedule

Sapelo2 Cluster New User Training

Our Sapelo2 training consists of 1 hr 30 mins of instructional videos, followed by a 1 hr 30 min workshop. The instructional videos are required to be viewed prior to the training workshop, and they can be found here

Prerequisites:

  • Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.

Video Playlist Training Goals:

  • Understand the layout of Sapelo2
  • Understand the Sapelo2 file systems
  • Understand the Sapelo2 partitions
  • Understand the Sapelo2 software environment

Workshop Training Goals:

  • Understand how to request computing resources and submit a computational batch job following the Sapelo2 cluster general workflow
  • Understand how to initiate an interactive job
  • Understand how to transfer files to and from the cluster
  • Understand how to get support from GACRC support team when you have any issues on cluster
Title Date/Time
Using Sapelo2 Cluster at the GACRC April 17th, Wednesday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC May 9th, Thursday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC May 15th, Wednesday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC May 23rd, Thursday, 2:00 PM - 4:00 PM
Using Sapelo2 Cluster at the GACRC May 31st, Friday, 2:00 PM - 4:00 PM

Linux Training for Linux-inexperienced Cluster New Users

Please watch all videos from the Linux Basics playlist before attending the training workshop.

Prerequisite: The Linux Training workshop consists of hands-on practice of the concepts covered in the Linux Basics playlist, which must be viewed prior to attending.

Training Goals:

1. Understand fundamental concepts of Linux working environment (filesystem hierarchy, path, PATH, etc.)

2. Know how to use Linux common commands (ls, cd, pwd, cat, more, nano, mkdir, rm, cp, mv, etc.)

3. Understand what is Linux bash shell and know how to make a simple Linux script and run it in Linux environment

Title Date/Time
Use Linux on Cluster May 7th, Tuesday, 1:00 PM - 3:00 PM
Use Linux on Cluster May 13th, Monday, 1:00 PM - 3:00 PM
Use Linux on Cluster May 21st, Tuesday, 1:00 PM - 3:00 PM
Use Linux on Cluster May 29th, Wednesday, 1:00 PM - 3:00 PM

Using Sapelo2 Cluster at the GACRC, Part II

Prerequisites:

  • Linux basics. A Linux-inexperienced user must complete a prerequisite Linux training for Linux-inexperienced cluster new users.
  • Sapelo2 cluster new user training. Fundamental HPC and Sapelo2 knowledge is required for this advanced Sapelo2 workshop.

Training Goals:

1. Learn about high-performance computing framework

2. Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?

3. How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?

4. How can I make my job run more efficiently (through the correct use of software and hardware)?

5. A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2

Title Date/Time
Using Sapelo2 Cluster at the GACRC, Part II Not scheduled

Python Basics

Prerequisite: No prerequisites

Training Goals:

1. Understand Python scientific modules and distributions

2. Understand Python general lexical conventions; Python built-in data types, like string, list, tuple, dictionary, etc.

3. Understand Python programming structures and procedural programming using functions

Title Date/Time
Python Basics I Not scheduled
Python Basics II Not scheduled

R Basics

Prerequisite: No prerequisites

Training Goals:

1. Understand fundamentals of R language, e.g. R general lexical conventions, data types, functions, and packages. Part 2 will introduce loops and functions.

2. Be able to manipulate and create data frames using built in functions and the dplyr package.

3. Interact with your file system and submit R code as a batch job to Sapelo 2.


Title Date/Time
R Basics I Not scheduled
R Basics II Not scheduled

Conda

Prerequisite: No prerequisites

Training Goals:

1. Understand fundamentals of conda environment

2. Use conda to create and configure your own virtual environments

3. Activate your environments to run python apps from your home directory on Sapelo2

Title Date/Time
Conda Basics Not scheduled


How to Register

Please Note, the training workshops Using Sapelo2 Cluster at the GACRC and Use Linux on Cluster are ONLY offered to new users who need computing user accounts on the GACRC Sapelo2 cluster, or any current users who have never attended the GACRC Sapelo2 cluster new user training before. Please ask your group PI/UGA faculty member to send us a request for you, using the GACRC User Account Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25839

If you want to attend Python Basics, R, and Conda basics training sessions, please send us a request using the GACRC Training Request form at https://uga.teamdynamix.com/TDClient/Requests/ServiceDet?ID=25852 . In your request, please tell us which session(s) you want to attend.

The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC fundamental introduction, Linux introductory III (Linux working environment and utilities), Bioinfomatics applications on Sapelo cluster, Perl, R, C/C++/Fortran programming, etc., in the near future. We will announce those events when they are scheduled.

The GACRC Web Training page can be found at https://gacrc.uga.edu/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.

Topic Introduction

Title: Sap2test cluster migration training

Focus: Slurm queueing system, including Slurm job commands, job environment variables, and job submission headers, etc.

The new software environment on Sap2test

Other important topics related to Sap2test working environment


Title: Using Sapelo2 Cluster at the GACRC

Focus: Sapelo2 HPC cluster and computational batch job submission workflow

Cluster's storage environment

Computational queues on cluster

Software environment

How to submit computational batch jobs

Other tips and guidelines for users


Title: Using Sapelo2 Cluster at the GACRC, Part II

Focus: More topics on how to use Sapelo2 cluster

Learn about high-performance computing framework

Why is my job pending? How can I get my job to start sooner? How to find available computing resources on Sapelo2?

How to request computing resources such as nodes, CPU cores, memory, GPU device, etc. to run serial, threaded, MPI, and GPU jobs on Sapelo2?

How can I make my job run more efficiently (through the correct use of software and hardware)?

A quick intro to MPI library and how to compile/run MPI jobs on Sapelo2


Title: Use Linux on Cluster

Focus: Linux OS fundamentals

Linux common commands, filesystem, and shell

Linux shell scripting basics

Common Linux utilities, e.g., grep, sed, find, sort, and awk, etc.

Linux Hands-on practice


Title: Python Basics I, II

Focus of I: Python language overview, scientific modules and distributions

Python general lexical conventions

Basic built-in data types, like string, list, tuple, dictionary, etc.

Focus of II: Programming structures: control flow and loop

Function: procedural programming with examples, lambda expression, factory function and generator


Title: R Basics I, II

Focus of I: R language overview,general lexical conventions, data types, functions, and packages.

Basic built-in data types, like string, numeric, list, dataframe etc. Using the dplyr package.

Focus of II: Programming structures: control flow, loops and functions

Title: Python on GACRC Sapelo2 Cluster

Focus: Install Python packages/modules in a user's home directory on Sapelo2 cluster

Python versions installed on Sapelo2

Python environment details on Sapelo2

How to know a Python package is installed or not on Sapelo2

How to install a Python package in user's home directory on Sapelo2


Title: Do It Yourself: Using Conda to create and run python environments to suit your computing needs effortlessly!

Focus: Use conda to create and configure your own python virtual environments; Activate your environments to run python apps from your home directory on Sapelo2

What is Conda and its environment

Conda on Sapelo2

Use conda to create and configure your own python virtual environments

Activate your environments to run python apps from your home directory on Sapelo2


Title: How to submit and run jobs efficiently and correctly on Sapelo2

Focus: Sapelo2 cluster general workflow and correct computing resource requesting

Overview of Sapelo2 cluster with reference tables and operational diagrams

Sapelo2 batch job submission workflow taking global scratch as job working space

How to request computing resources correctly

How to run pipeline tasks and what are advantages/disadvantages of different options

Sapelo2 cluster guideline and practical tips


Title: GACRC Storage Environment

Focus: Overview of Linux common commands related to file and folder operations

Overview of the storage enviornment of zcluster and Sapelo cluster at GACRC

How to transfer data between local and GACRC storage

New file transfer node xfer2 and how to use it to transfer data between zcluster and the new cluster

GACRC suggestions on good practices on GACRC storage, etc;


Title: NCBI Blast application on sapelo

Focus: Introduction to BLAST

BLAST job submission to sapelo

Advantages & Disadvantages: NCBI website vs run at sapelo.

Understand BLAST output

Troubleshooting the BLAST results


Title: NGS application overview at GACRC

Focus: Overview of Bioinformatics software available on HPC clusters at GACRC

It’s a brave new world – NGS and its Applications

Hardware, Software, Databases available at GACRC

NGS project: Logistics and resource considerations

Best practices, common mistakes, troubleshooting and getting help from GACRC


Title: Perl Language Basics I, II

Focus of I: Overview of Perl language,

Perl general scripting style

Perl fundamental data types

Focus of II: Program structure: control flow and loop

Perl subroutine

Perl I/O

Download

Sapelo2 Cluster Training

Media:GACRC_Sapelo2_cluster_new_user_training_workshop_v10.8.pdf

Sap2test Migration Training

Media:Migrating_to_Slurm_and_new_software_environment.pdf

Please note: To help users familiarize with Slurm and the test cluster environment, we have prepared some training videos that are available from the GACRC's Kaltura channel at https://kaltura.uga.edu/channel/GACRC/176125031 (login with MyID and password is required).

Teaching Cluster Training

Media:GACRC-Teaching-cluster-new-user-training-workshop_Spring2024.pdf

Linux Training for New Cluster Users

Media:Linux_Training_For_New_Users_Of_Cluster_Suchi_04252019.pdf

Python Basics

Media:Python_Language_Basics_I_v5.1.pdf
Media:Python_Language_Basics_II_v5.1.pdf
Media:Python_Basics_v6.1.pdf

R Basics

Media:R_Language_Basics_PowerPoint_v2.0.pdf
Media:R_Language_Basics_Document_v2.0.pdf
Media:R_Language_Basics_part_2_Powerpoint_v1.0.pdf
Media:R_Language_Basics_part_2_Document_v1.0.pdf

Perl Basics

Media:Perl_Language_Basics_I_Workshop_v1.pdf

Topical Sessions

Media:Using_Sapelo2_Cluster_at_the_GACRC_Part_II_Rocky8.pdf
Media:Using_Conda_on_the_GACRC_Sap2test_cluster_v1.pdf
Media:Blast_Workshop_GACRC_02012017.pdf
Media:Next-Generation_Sequencing_Applications_at_GACRC_10282016.pdf

Out-Reach/On-Class Talk

Dept./Center/Institute Type Workshop PDF
BCMB8330 - Spring2024 On-Class Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330_Spring2024.pdf
PHYS4601/6601 - Spring2024 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601-Spring2024.pdf ; Media:Gacrc_handout2024_phys4601.pdf
PHYS8601 - Spring2024 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601-Spring2024.pdf ; Media:Gacrc_handout2024_phys8601.pdf
CSP seminar - Fall 2023 Out-Reach Media:GACRC_overview_20230822-CSP.pdf
BCMB8330 - Spring2023 On-Class Media:GACRC-Teaching-cluster-new-user-training-workshop_bcmb8330.pdf
PHYS4601/6601 - Spring2023 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf ; Media:Gacrc_handout2023_phys4601.pdf
PHYS8602 - Spring2023 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf ; Media:Gacrc_handout2023_phys8602.pdf
ILS GradFIRST course - Fall 2022 Out-Reach Media:GACRC_overview_20220901-ILS.pdf
FYOS1001 - Fall 2022 Out-Reach Media:High_Performance_Computing_(HPC)_on_GACRC_Sapelo2_Cluster.pdf
CSP seminar - Fall 2022 Out-Reach Media:GACRC_overview_20220830-CSP.pdf
CSP seminar - Fall 2022 Out-Reach Media:Compile_and_Run_HPC_code_on_Sapelo2.pdf
Terry College IT - Spring2022 Out-Reach Media:GACRC_overview_20220506-Terry.pdf
PHYS8601 - Spring2022 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf
PHYS4601/6601 - Spring2022 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf ; Media:Gacrc_handout2021_phys4601.pdf
PHYS8602 - Spring2021 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602-2021.pdf ; Media:Gacrc_handout2021_phys8602.pdf
GENE4220 - Fall2020 On-Class Media:GACRC_Teaching_cluster_new_user_training_workshop_GENE4220_Fall2020.pdf
College of Veterinary Medicine - Spring2020 Out-Reach (jlslab) Media:Using_GACRC_Sapelo2_Cluster-Advanced_Topics(1).pdf
Byod Data Center - Fall2019 On-Class (FYOS1001) Media:High_Performance_Computing_(HPC)_on_Cluster.pdf
Department of Linguistics - Fall2019 On-class (LING6570) Media:GACRC_Teaching_cluster_new_user_training_workshop_LING6570_Part2.pdf
The Center for Simulational Physics - Fall2019 Out-Reach (Seminar Talk 20190820) Media:Introduction_to_GACRC_Computing_Facility_-_Sapelo2_Cluster_CSP-Fall2019.pdf
The Center for Simulational Physics On-Class (PHYS4601/6601) Media:GACRC_Teaching_cluster_new_user_training_workshop-phys4601.pdf Media:Gacrc_handout2019_phys4601.pdf
The Center for Simulational Physics On-Class (PHYS8601) Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8601.pdf Media:Gacrc_handout2020_phys8601.pdf
The Center for Simulational Physics On-Class (PHYS8602) Media:GACRC_Teaching_cluster_new_user_training_workshop-phys8602.pdf Media:Gacrc_handout2019_phys8602.pdf
Food Science - Fall2018 On-Class (FYOS1001) Media:High_Performance_Computing_(HPC)_on_Sapelo2_Cluster_at_GACRC.pdf
The Center for Simulational Physics - Summer2018 Out-Reach (Seminar Talk 20180821) Media:Introduction_to_GACRC_Sapelo2_cluster.pdf
Miller plant science - Summer2018 Out-Reach (jlmlab) Media:Introduction_to_GACRC_Sapelo2_cluster.pdf
Biochemistry and Molecular Biology - Spring2018 On-Class (BCMB8330) Media:GACRC_zcluster_Class_Training_BCMB8330_Spring_2018.pdf
The Center for Simulational Physics - Summer2017 Out-Reach (Seminar Talk 20170831) Media:Introduction_on_HPC_Resources_at_the_GACRC.pdf
Computational Physics - Spring2017 On-class (PHYS4601/6601) Media:Phys4601.pdf
Computational Physics - Spring2017 On-class (PHYS8602) Media:Phys8602.pdf
The Institute of Bioinformatics and the Quantitative Biology Consulting Group Out-Reach Media:Introduction_to_HPC_Resources_at_GACRC_BBB_Talk_20151014.pdf
The Center for Simulational Physics Out-Reach (Seminar Talk 20160906) Media:Introduction_to_Sapelo_Computing_Resources_at_GACRC_Workshop20160906.pdf
Microbiology On-Class (MIBO8150) Media:Introduction_to_HPC_Resources_at_GACRC_MIBO8150_20160926.pdf
Statistics On-Class (STAT8060) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_Workshop_STAT8060_20150826.pdf
Biochemistry and Molecular Biology On-Class (BCMB8211) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BCMB8211_20160114.pdf
Plant Biology On-Class (PBIO/BINF8350) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO-BINF8350_20160115.pdf
Plant Biology - Bioinformatics Applications Fall2016 On-Class (PBIO4550) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_PBIO_4550_08182016.pdf
Bioinformatics - Essential Computing Skills for Biologists Fall2016 On-Class (BINF4005) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_BINF_4005_08312016.pdf
Computers in Experimental Genetics Fall2016 On-Class (GENE4220) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_GENE_4220_10192016.pdf
Statistics - Advanced Applications and Computing in R Fall2016 On-Class (STAT8330) Media:Introduction_to_HPC_Using_zcluster_at_GACRC_STAT8330_11022016.pdf

NOTE: The slides may become outdated and you should always check GACRC Wiki for up to date information.

Past Sessions

Pass Sessions in 2021

Past Sessions in 2020

Past Sessions in 2019

Past Sessions in 2018

Past Sessions in 2017

Past Sessions in 2016

Past Sessions in 2015

Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Training&oldid=21796"