All public logs

Combined display of all available logs of Research Computing Center Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 14:27, 30 July 2024 Chelsea talk contribs created page Trinity-HpcGridRunner (Created page with " ===Description=== Instruction on how to modify a Trinity script to run in conjunction with HpcGridRunner ===Running Program=== Step 1: Create normal Trinity script * Note: normal Trinity jobs should be run utilizing /lscratch, however, this method running with HpcGridRunner does not benefit from /lscratch so this example will not have any /lscratch components in it. For more information on running normal Trinity jobs with /lscratch, please see Trinity-Sapelo2#Utilizi...") Tag: Visual edit
• 11:24, 14 May 2024 Chelsea talk contribs created page IQ-Tree-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.6.12, 2.2.2.6 ===Author / Distributor=== Please see http://www.iqtree.org/ ===Description=== Efficient phylogenomic software by maximum likelihood. More information: http://www.iqtree.org/ === Running Program === *Version 2.2.2.6, installed in /apps/eb/IQ-TREE/2.2.2.6-gompi-2022a To use this version of IQ-TREE,...")
• 11:22, 14 May 2024 Chelsea talk contribs created page HISAT2-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.2.1, 3 === Author / Distributor === [https://ccb.jhu.edu/software/hisat2/index.shtml HISAT2] === Description === "HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome)." More...")
• 11:15, 14 May 2024 Chelsea talk contribs created page EIGENSOFT-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 7.2.1 ===Author / Distributor=== [https://www.hsph.harvard.edu/alkes-price/software/ EIGENSOFT] ===Description=== The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method use...")
• 11:14, 14 May 2024 Chelsea talk contribs created page Cytoscape-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 3.9.1 === Author / Distributor === Please see https://cytoscape.org/ === Description === "Cytoscape is an open source software tool for integrating, visualizing, and analyzing data in the context of networks." more details at [http://www.cytoscape.org/documentation_users.html CytoScape] === Running Program ===...")
• 10:36, 14 May 2024 Chelsea talk contribs created page Bowtie2-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.4.1, 2.4.4, 2.4.5, 2.5.2 === Author / Distributor === [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie2] === Description === "Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or...")
• 10:32, 14 May 2024 Chelsea talk contribs created page BLAST-Sapelo2 (Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.2.26 === Author / Distributor === [http://blast.ncbi.nlm.nih.gov/ BLAST] === Description === "Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences." More details...")
• 12:36, 12 April 2024 Chelsea talk contribs uploaded File:Jupyter-20240412.png
• 12:36, 12 April 2024 Chelsea talk contribs created page File:Jupyter-20240412.png
• 14:21, 5 January 2024 Chelsea talk contribs uploaded File:Vscode-password.png
• 14:21, 5 January 2024 Chelsea talk contribs created page File:Vscode-password.png
• 14:13, 5 January 2024 Chelsea talk contribs uploaded File:Vscode-connect.png
• 14:13, 5 January 2024 Chelsea talk contribs created page File:Vscode-connect.png
• 08:42, 3 January 2024 Chelsea talk contribs uploaded a new version of File:Vscode-setup1.png
• 08:41, 3 January 2024 Chelsea talk contribs uploaded File:Vscode-setup1.png
• 08:41, 3 January 2024 Chelsea talk contribs created page File:Vscode-setup1.png
• 08:27, 3 January 2024 Chelsea talk contribs uploaded File:Vscode-extension.png
• 08:27, 3 January 2024 Chelsea talk contribs created page File:Vscode-extension.png
• 08:27, 3 January 2024 Chelsea talk contribs uploaded File:Vscode-menu.png
• 08:27, 3 January 2024 Chelsea talk contribs created page File:Vscode-menu.png
• 13:29, 19 December 2023 Chelsea talk contribs uploaded File:Vscode resources.png
• 13:29, 19 December 2023 Chelsea talk contribs created page File:Vscode resources.png
• 13:29, 19 December 2023 Chelsea talk contribs uploaded File:Start vscode.png
• 13:29, 19 December 2023 Chelsea talk contribs created page File:Start vscode.png
• 09:58, 19 December 2023 Chelsea talk contribs created page VSCODE (Created page with " == Open OnDemand == Open OnDemand is a web-based service that allows users to run software with a graphical user interface (GUI) such as Jupyter Notebook. Please see our wiki...") Tag: Visual edit
• 13:07, 18 December 2023 Chelsea talk contribs uploaded File:Load condakernel.png
• 13:07, 18 December 2023 Chelsea talk contribs created page File:Load condakernel.png
• 13:07, 18 December 2023 Chelsea talk contribs uploaded File:Jupyter ood modules.png
• 13:07, 18 December 2023 Chelsea talk contribs created page File:Jupyter ood modules.png
• 16:50, 15 December 2023 Chelsea talk contribs uploaded File:Screenshot 2023-12-13 at 10.25.00 AM.png
• 16:50, 15 December 2023 Chelsea talk contribs created page File:Screenshot 2023-12-13 at 10.25.00 AM.png
• 09:37, 12 December 2023 Chelsea talk contribs created page Using a Conda environment in Jupyter (Created page with "== Conda environment == A Conda environment is a type of virtual environment. Conda environments are used to contain a set of software that you install (via Conda) into that e...")
• 12:07, 28 August 2023 Chelsea talk contribs uploaded File:GACRC Sapelo2 cluster new user training workshop v10.8.pdf
• 12:07, 28 August 2023 Chelsea talk contribs created page File:GACRC Sapelo2 cluster new user training workshop v10.8.pdf