Difference between revisions of "Software"

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On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the [[Software on Sapelo2]] page.
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On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the [[Software on Sapelo2]] page and on the teaching cluster at the [[Software on Teaching Cluster]] page.
  
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Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in [[Software on Sapelo2]].  
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Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in [[Software on Sapelo2]] or [[Software on Teaching Cluster]].
  
 
To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching:
 
To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching:
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You can also use the command above to search for a specific application. For more information, please see [[Lmod]].
 
You can also use the command above to search for a specific application. For more information, please see [[Lmod]].
  
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'''Note:''' Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 600 software packages installed there. For more information, please see [[Software on Sapelo2]].
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The '''file transfer''' nodes ('''xfer''' nodes) do not have environment modules installed. File transfer utilities are installed centrally on the xfer nodes and available on the users' default PATH. Such utilities include bs (basespace-cli), fpsync, rclone, rsync, etc.
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https://wiki.gacrc.uga.edu/wiki/Main_Page
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'''Note:''' Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 1300 software packages installed there. For more information, please see [[Software on Sapelo2]].
  
 
==Partial List of Installed Software==
 
==Partial List of Installed Software==
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Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''.
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Last updated '''{{REVISIONYEAR}}-{{REVISIONMONTH}}-{{REVISIONDAY2}}'''. This is a partial list of installed software so there may be software or versions of software available on Sapelo2 which are not included in this table.  
 
'''Note:''' Click on the icons to the right of the column headings to sort the table.
 
'''Note:''' Click on the icons to the right of the column headings to sort the table.
 
[[#0|0-9]] [[#A|A]] [[#B|B]] [[#C|C]] [[#D|D]] [[#E|E]] [[#F|F]] [[#G|G]] [[#H|H]] [[#I|I]] [[#J|J]] [[#K|K]] [[#L|L]] [[#M|M]] [[#N|N]] [[#O|O]] [[#P|P]] [[#Q|Q]] [[#R|R]] [[#S|S]] [[#T|T]] [[#U|U]] [[#V|V]] [[#W|W]] [[#X|X]] [[#Y|Y]] [[#Z|Z]]
 
[[#0|0-9]] [[#A|A]] [[#B|B]] [[#C|C]] [[#D|D]] [[#E|E]] [[#F|F]] [[#G|G]] [[#H|H]] [[#I|I]] [[#J|J]] [[#K|K]] [[#L|L]] [[#M|M]] [[#N|N]] [[#O|O]] [[#P|P]] [[#Q|Q]] [[#R|R]] [[#S|S]] [[#T|T]] [[#U|U]] [[#V|V]] [[#W|W]] [[#X|X]] [[#Y|Y]] [[#Z|Z]]
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<!--| <span id ="0"></span> [[3D-DNA-sapelo2 |3D-DNA]] || 180922 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[3SEQ-Sapelo2 |3SEQ]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[3SEQ-Sapelo2 |3SEQ]] || 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[albacore-Sapelo2|Albacore]] || 2.3.4-cp35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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|<span id ="A"></span> [[AlphaFold-Sapelo2|AlphaFold]] || 2.2.4, 2.3.1, 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[AMBER-Sapelo2|AMBER]] || 14, 16, 18 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[AMBER-Sapelo2|AMBER]] || 22 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[AMBER-Teaching|AMBER]] || 14 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[antiSMASH-Sapelo2|antiSMASH]] || 4.2.0, 5.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[antiSMASH-Sapelo2|antiSMASH]] || 4.2.0, 5.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1, 7, 7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[Apollo-Sapelo2|Apollo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[BioPython-Sapelo2|BioPython]] || 1.68 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BioPython-Sapelo2|BioPython]] || 1.79 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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|[[Biopython-Teaching|Biopython]] || 1.75 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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|[[Biopython-Teaching|Biopython]] || 1.79 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[BLAST+-Sapelo2|BLAST+]] || 2.2.31, 2.6.0, 2.7.1, 2.9.0, 2.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BLAST+-Sapelo2|BLAST+]] || 2.12.0, 2.13.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] ||[[File:Up20.png|20px|link=#top]]  
 
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| [[BLAST+-Teaching|BLAST+]] || 2.9.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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| [[BLAST+-Teaching|BLAST+]] || 2.12.0, 2.13.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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| [[Bowtie2-Teaching|Bowtie2]] || 2.3.5.1, 2.4.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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| [[Bowtie2-Teaching|Bowtie2]] || 2.4.1, 2.4.4, 2.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | <span id ="C"></span> [[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|<span id ="C"></span>  [[Cactus-Sapelo2|Cactus]] || 2.6.7, 2.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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|<span id ="C"></span>  [[Canu-Sapelo2|Canu]] || 2.1.1|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[Canu-Sapelo2|Canu]] || 2.2||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Chimera-Sapelo2|Chimera]] || 1.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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| [[Chimera-Teaching|Chimera]] || 1.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[CRISPResso-Sapelo2|CRISPResso]] || 1.0.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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|[[CUDA-Sapelo2|CUDA]] || 9.2.88, 10.1.243, 11.0.2, 11.1.1, 11.2.1  || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[cryoSPARC-Sapelo2|CryoSPARC]] || 3.3.1 || [[:Category:Engineering|Engineering]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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| [[Cromwell-Sapelo2|Cromwell]] || 56 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|[[CUDA-Sapelo2|CUDA]] || 11.3.1, 11.4.1, 11.7.0, 12.0.0 ||[[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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| [[Cytoscape-Teaching|Cytoscape]] || 3.7.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
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| [[Cytoscape-Teaching|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
 
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<!-- | <span id ="D"></span> [[Dadi-Sapelo2|Dadi]] || 1.7.0, 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | <span id ="D"></span> [[Dadi-Sapelo2|Dadi]] || 1.7.0, 2.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Doxygen-Sapelo2|Doxygen]] || 1.8.7, 1.8.11, 1.8.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Doxygen-Sapelo2|Doxygen]] || 1.8.7, 1.8.11, 1.8.13 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- |  [[DRAM-bio-Sapelo2|DRAM-bio]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
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<!-- | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="E"></span> [[EIGENSOFT-Teaching|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
| <span id ="E"></span> [[EIGENSOFT-Teaching|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
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| [[Flankophile-Sapelo2|Flankophile]] || 0.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[EMBOSS-Sapelo2|EMBOSS]] || 6.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[GEAN-Sapelo2|GEAN]] || 0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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<!-- | [[GEM-Sapelo2|GEM]] || 1.0, 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[GEM-Sapelo2|GEM]] || 1.5.1 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
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|- -->
 
<!-- | [[GEM-library-Sapelo2 |GEM-library]] || 20130406-045632 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[GEM-library-Sapelo2 |GEM-library]] || 20130406-045632 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 522: Line 537:
 
<!-- | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.57 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.57, 4.71 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 592: Line 607:
 
<!-- | [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[Gromacs-Sapelo2 |Gromacs]] || 2016.4, 2018.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
|<span id ="I"></span>  [[GROMACS-Sapelo2 |GROMACS]] || 2021.5, 2023.1 ||[[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 632: Line 647:
 
<!-- | [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->  
 
|- -->  
 
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 641: Line 656:
 
|- -->
 
|- -->
 
| [[HpcGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
| [[HpcGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
−
|- -->
+
|-
 
<!-- | [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
Line 685: Line 700:
 
<!-- | [[IonCom-Sapelo2|IonCom]] || 20190521  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[IonCom-Sapelo2|IonCom]] || 20190521  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[InterProScan-Sapelo2|InterProScan]] || 5.44-90.0, 5.51-85.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[InterProScan-Sapelo2|InterProScan]] || 5.63-95.0 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[ipyrad-Sapelo2|ipyrad]] || 0.7.24, 0.7.28, 0.7.30, 0.9.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[ipyrad-Sapelo2|ipyrad]] || 0.7.24, 0.7.28, 0.7.30, 0.9.19 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 713: Line 728:
 
<!-- | [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
|<span id ="J"></span> [[Java-Teaching|Java]] || 1.8.0_144, 1.8.0_241, 11.0.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
|<span id ="J"></span> [[Java-Teaching|Java]] || 1.8.0_241, 11.0.16, 13.0.2, 15.0.1, 17.0.6 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|-  
 
|-  
 
<!-- | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 727: Line 742:
 
<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[Jupyter-Sapelo2|Jupyter]] || 5.0.0, 5.6.0, 6.0.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Jupyter-Sapelo2|Jupyter]] || 5.0.0, 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 +
|-
 +
| [[Jupyter-Teaching|Jupyter]] || 6.0.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
 +
|-
 
|- -->
 
|- -->
 
<!-- | <span id ="K"></span> [[Kaiju-Sapelo2|Kaiju]] || 1.6.2, 1.7.3 |<!-- | [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | <span id ="K"></span> [[Kaiju-Sapelo2|Kaiju]] || 1.6.2, 1.7.3 |<!-- | [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 755: Line 773:
 
<!-- | [[LAME-Sapelo2|LAME]] || 3.100 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[LAME-Sapelo2|LAME]] || 3.100 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| <span id ="L"></span>[[LAMMPS-Sapelo2|LAMMPS]] || 3Mar2020 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| <span id ="L"></span>[[LAMMPS-Sapelo2|LAMMPS]] || 23Jun2022 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|-  
 
|-  
 
<!-- | [[LAPACK-Sapelo2|LAPACK]] || 3.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[LAPACK-Sapelo2|LAPACK]] || 3.6.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 827: Line 845:
 
<!-- | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
|<span id ="M"></span> [[Magma-Sapelo2|Magma]] || 2.25 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
|<span id ="M"></span> [[Magma-Sapelo2|Magma]] || 2.27-1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|-  
 
|-  
 
<!-- | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 833: Line 851:
 
<!-- | [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[Maker-Sapelo2|Maker]] || 3.01.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Maker-Sapelo2|Maker]] || 3.01.04 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|-  
 
|-  
 
<!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 853: Line 871:
 
<!-- | [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[MATLAB-Sapelo2|MATLAB]] || R2019b, R2020a, R2020b, R2021a || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[MATLAB-Sapelo2|MATLAB]] || R2023a || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|-  
 
|-  
 
<!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 887: Line 905:
 
<!-- | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[Meraculous-Sapelo2|Meraculous]] || 2.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Meraculous-Sapelo2|Meraculous]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 901: Line 919:
 
<!-- | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[MetaPhlAn-Sapelo2|MetaPhlAn]] || 1.7.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[MetaPhlAn4-Sapelo2|MetaPhlAn4]] || 4.0.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
−
|- -->
+
|-
 
<!-- | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
Line 953: Line 971:
 
| [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
| [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|-
 
|-
−
<!-- | [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 959: Line 977:
 
<!-- | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[MrBayes-Sapelo2|MrBayes]] || 3.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[MrBayes-Sapelo2|MrBayes]] || 3.2.6, 3.2.7a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
−
|- -->
+
|-
 
<!-- | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
Line 1,073: Line 1,091:
 
<!-- | [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[ORCA-Sapelo2 |ORCA]] || 4.2.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[ORCA-Sapelo2 |ORCA]] || 4.2.1, 5.0.4 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
−
|- -->
+
|-
 
<!-- | [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
Line 1,085: Line 1,103:
 
|[[ORP-Sapelo2|ORP]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|[[ORP-Sapelo2|ORP]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.3.8, 2.3.11, 2.5.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.5.4 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 1,103: Line 1,121:
 
<!-- | [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
|<span id ="P"></span> [[PAML-Teaching|PAML]] || 4.9i || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
|<span id ="P"></span> [[PAML-Teaching|PAML]] || 4.9j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->  
 
|- -->  
 
<!-- | [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,151: Line 1,169:
 
<!-- | [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[Perl-Teaching|Perl]] || 5.30.0 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Perl-Teaching|Perl]] || 5.34.1 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,167: Line 1,185:
 
<!-- | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[PHENIX-Sapelo2|PHENIX]] || 1.18.2-3874 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Phenix-Sapelo2|Phenix]] || 1.19.2-4158 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
−
|- -->
+
|-  
 +
| [[Pong-Sapelo2|Pong]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
<!-- | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
Line 1,283: Line 1,302:
 
<!-- | [[Pysam-Sapelo2 |Pysam]] || 0.10.0, 0.13.0, 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Pysam-Sapelo2 |Pysam]] || 0.10.0, 0.13.0, 0.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[Python-Sapelo2 |Python]] || 2.7.14, 2.7.15, 2.7.16, 3.7.4, 3.8.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
|-
 +
| [[Python-Sapelo2 |Python]] || 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[Python-Teaching|Python]] || 3.7.4, 2.7.16 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Python-Teaching|Python]] || 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4|| [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,315: Line 1,335:
 
<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
|- -->
 
|- -->
−
| <span id ="R"></span>[[R-Sapelo2 |R]] || 3.5.0, 3.6.2, 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| <span id ="R"></span>[[R-Sapelo2 |R]] || 4.1.2, 4.2.1, 4.3.1 ||[[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|-
 
|-
−
| [[R-Teaching|R]] || 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
| [[R-Teaching|R]] || 4.1.2, 4.2.1, 4.3.1 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
| [[racon-Sapelo2 |Racon]] || 1.4.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
| [[racon-Sapelo2 |Racon]] || 1.4.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,385: Line 1,405:
 
<!-- | [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[Rosetta-Sapelo2 |Rosetta]] || 2020.28.61328 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Rosetta-Sapelo2 |Rosetta]] || 2022.46.334 ||[[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,391: Line 1,411:
 
<!-- | [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
<!-- | [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
|- -->
 
|- -->
−
<!-- | [[Rstudio-Sapelo2|Rstudio]] || 1.1.463, 1.2.5033 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Rstudio-Sapelo2|Rstudio]] || 2023.06.1-524 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
−
|- -->
+
|-
 
<!-- | [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
Line 1,413: Line 1,433:
 
<!-- | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
|<span id ="S"></span> [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
|<span id ="S"></span> [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.6, 1.14, 1.16.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 +
|- -->
 +
| [[SequenceTubeMap-Sapelo2|sequenceTubeMap]] || 20230906 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
|- -->
 
|- -->
 
<!-- | [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,545: Line 1,567:
 
<!-- | [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.8.2-1, 2.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.9.6-1,2.10.8,2.11.1 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,573: Line 1,595:
 
<!-- | [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
| [[StringTie-Teaching|StringTie]] || 2.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
+
| [[StringTie-Teaching|StringTie]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|-  
 
|-  
−
<!-- | [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
| [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]]  || [[File:Up20.png|20px|link=#top]]  
 
| [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]]  || [[File:Up20.png|20px|link=#top]]  
Line 1,647: Line 1,669:
 
<!-- | [[Trim_Galore-Sapelo2|Trim_Galore]] || 0.4.5, 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Trim_Galore-Sapelo2|Trim_Galore]] || 0.4.5, 0.6.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
|<span id ="T"></span> [[Trinity-Sapelo2|Trinity]] || 2.5.1, 2.8.4, 2.8.5, 2.9.1, 2.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
|<span id ="T"></span> [[Trinity-Sapelo2|Trinity]] || 2.5.1, 2.8.4, 2.8.5, 2.15.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[Trinity-Teaching|Trinity]] || 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Trinity-Teaching|Trinity]] || 2.6.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 1,655: Line 1,677:
 
<!-- | [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | <span id ="U"></span>[[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| <span id ="U"></span>[[UBCG-Sapelo2|UBCG]] || 3.0
 +
|[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 +
|-
 +
<!-- | [[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
 
|- -->
 
|- -->
 
<!-- | [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,683: Line 1,708:
 
<!-- | [[VCFtools-Teaching|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[VCFtools-Teaching|VCFtools]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
−
<!-- | [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
+
| [[Velvet-Sapelo2|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
 
|- -->
 
|- -->
 
<!-- | [[Velvet-Teaching|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
 
<!-- | [[Velvet-Teaching|Velvet]] || 1.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  

Latest revision as of 16:28, 21 March 2024

On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the Software on Sapelo2 page and on the teaching cluster at the Software on Teaching Cluster page.

Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Software on Sapelo2 or Software on Teaching Cluster.

To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

The file transfer nodes (xfer nodes) do not have environment modules installed. File transfer utilities are installed centrally on the xfer nodes and available on the users' default PATH. Such utilities include bs (basespace-cli), fpsync, rclone, rsync, etc. https://wiki.gacrc.uga.edu/wiki/Main_Page

Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 1300 software packages installed there. For more information, please see Software on Sapelo2.

Partial List of Installed Software

Last updated 2024-03-21. This is a partial list of installed software so there may be software or versions of software available on Sapelo2 which are not included in this table. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
AlphaFold 2.2.4, 2.3.1, 2.3.4 Bioinformatics Sapelo2 Up20.png
AMBER 22 Chemistry Sapelo2 Up20.png
anvi'o 4, 5.1, 5.3, 5.4, 6.1, 7, 7.1 Bioinformatics sapelo2 Up20.png
basespace-cli 1.2.1 Bioinformatics Sapelo2 Up20.png
Beast 1.10.4, 2.6.2, 2.6.3 Bioinformatics Sapelo2 Up20.png
BionanoSolve 3.6.1-11162020 Bioinformatics Sapelo2 Up20.png
BioPython 1.79 Bioinformatics Sapelo2 Up20.png
Biopython 1.79 Bioinformatics Teaching Up20.png
BLAST+ 2.12.0, 2.13.0 Bioinformatics Sapelo2 Up20.png
BLAST+ 2.12.0, 2.13.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
Bowtie2 2.4.1, 2.4.4, 2.4.5 Bioinformatics Teaching Up20.png
BUSCO 4.0.5, 4.0.6 Bioinformatics Sapelo2 Up20.png
Cactus 2.6.7, 2.7.0 Bioinformatics Sapelo2 Up20.png
Canu 2.2 Bioinformatics Sapelo2 Up20.png
CellRanger-ATAC 1.2.0, 2.0.0 Bioinformatics Sapelo2 Up20.png
Chimera 1.16 Bioinformatics Teaching Up20.png
CryoSPARC 3.3.1 Engineering Sapelo2 Up20.png
Cromwell 56 Tools Sapelo2 Up20.png
CUDA 11.3.1, 11.4.1, 11.7.0, 12.0.0 Programming Sapelo2 Up20.png
Cytoscape 3.9.1 Bioinformatics Teaching Up20.png
EIGENSOFT 7.2.1 Bioinformatics Teaching Up20.png
Flankophile 0.2.10 Bioinformatics Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Sapelo2 Up20.png
GAUSSIAN 16 Chemistry Teaching Up20.png
GaussView 5, 6.1 Chemistry Sapelo2 Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
GEM 1.5.1 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.57, 4.71 Bioinformatics Sapelo2 Up20.png
GROMACS 2021.5, 2023.1 Chemistry Sapelo2 Up20.png
HISAT2 2.2.1 Bioinformatics Teaching Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
iCommands 4.2.8 Tools Sapelo2 Up20.png
InterProScan 5.63-95.0 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
Java 1.8.0_241, 11.0.16, 13.0.2, 15.0.1, 17.0.6 Programming Teaching Up20.png
Jupyter 5.0.0, 6.4.12 Programming Sapelo2 Up20.png
Jupyter 6.0.2 Programming Teaching Up20.png
LAMMPS 23Jun2022 Chemistry Sapelo2 Up20.png
Magma 2.27-1 Other Sapelo2 Up20.png
Maker 3.01.04 Bioinformatics Sapelo2 Up20.png
MATLAB R2023a Programming Sapelo2 Up20.png
Medusa 1.6 Bioinformatics Sapelo2 Up20.png
Meraculous 2.2.6 Bioinformatics Sapelo2 Up20.png
MetaPhlAn4 4.0.3.1 Bioinformatics Sapelo2 Up20.png
MOTECC_qmdcp 90 Chemistry Teaching Up20.png
Mothur 1.39.5 Bioinformatics Sapelo2 Up20.png
MrBayes 3.2.6, 3.2.7a Bioinformatics Sapelo2 Up20.png
Ont-Guppy 4.4.2 Bioinformatics Sapelo2 Up20.png
ORCA 4.2.1, 5.0.4 Chemistry Sapelo2 Up20.png
ORP 2.2.6 Bioinformatics Sapelo2 Up20.png
OrthoFinder 2.5.4 Bioinformatics Sapelo2 Up20.png
OrthoMCL 2.0.9 Bioinformatics Sapelo2 Up20.png
PAML 4.9j Bioinformatics Teaching Up20.png
Perl 5.34.1 Programming Teaching Up20.png
Phenix 1.19.2-4158 Bioinformatics Sapelo2 Up20.png
Pong 1.5 Bioinformatics Sapelo2 Up20.png
Python 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4 Programming Sapelo2 Up20.png
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QIIME2 2019.10, 2020.2, 2020.6, 2020.11 Bioinformatics Sapelo2 Up20.png
R 4.1.2, 4.2.1, 4.3.1 Statistics Sapelo2 Up20.png
R 4.1.2, 4.2.1, 4.3.1 Statistics Teaching Up20.png
Racon 1.4.13 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.11, 8.2.12 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.12 Bioinformatics Teaching Up20.png
RevBayes 1.1.0 Bioinformatics Teaching Up20.png
Rosetta 2022.46.334 Chemistry Sapelo2 Up20.png
Rstudio 2023.06.1-524 Other Sapelo2 Up20.png
SAMtools 0.1.20, 1.6, 1.14, 1.16.1 Bioinformatics Teaching Up20.png
sequenceTubeMap 20230906 Bioinformatics sapelo2 Up20.png
smoke 4.7 Other Sapelo2 Up20.png
SRAToolKit 2.9.6-1,2.10.8,2.11.1 Bioinformatics Sapelo2 Up20.png
StringTie 2.2.1 Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
Structure 2.3.4 Bioinformatics Teaching Up20.png
Trinity 2.5.1, 2.8.4, 2.8.5, 2.15.1 Bioinformatics Sapelo2 Up20.png
UBCG 3.0 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png

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