Cromwell-Sapelo2
Jump to navigation
Jump to search
Category
Tools
Program On
Sapelo2
Version
56
Author / Distributor
Description
"Cromwell is a Workflow Management System geared towards scientific workflows. Cromwell is open sourced under the BSD 3-Clause license." cromwell.readthedocs.io
Running Program
Versions
Please also refer to Running Jobs on Sapelo2.
- Cromwell 56 is installed for use with Java 11.
Example Configuration File
Cromwell requires a configuration file that includes instructions for how to execute workflows.
The maintainers of Cromwell provide short and intuitive documentation and tutorials to help understand and write a Cromwell configuration file:
- https://cromwell.readthedocs.io/en/stable/tutorials/ConfigurationFiles/
- https://cromwell.readthedocs.io/en/stable/backends/SLURM/
- https://cromwell.readthedocs.io/en/stable/tutorials/HPCIntro/
Reviewing the content at the links above can help to understand the following Cromwell configuration file that has been adapted for Sapelo2 (based on their SLURM example):