OnDemand/Current Annoucements

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Revision as of 08:33, 26 September 2025 by Bcarpenter (talk | contribs) (Created page with "== Important Notice: IGV App Unavailable, run IGV from X Desktop == The IGV app is currently not functional. However, you can still run IGV through an X Desktop session in Open OnDemand. To do this: * Start an X Desktop session on Sapelo2 within OnDemand. * Select your desired resources (e.g., number of cores, memory, walltime limit, partition, etc.). * Once the job is running and the X Desktop session is launched, open a Terminal in the X Desktop environment. * Load...")
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Important Notice: IGV App Unavailable, run IGV from X Desktop

The IGV app is currently not functional. However, you can still run IGV through an X Desktop session in Open OnDemand.

To do this:

  • Start an X Desktop session on Sapelo2 within OnDemand.
  • Select your desired resources (e.g., number of cores, memory, walltime limit, partition, etc.).
  • Once the job is running and the X Desktop session is launched, open a Terminal in the X Desktop environment.
  • Load the IGV module and start the application using the following commands:

ml IGV/2.19.1-Java-21

igv.sh

The igv.sh command should open the IGV GUI.

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