User contributions for Chelsea
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20 May 2024
- 09:3109:31, 20 May 2024 diff hist +1 Training →Regular Training Announcement Tag: Visual edit
- 09:3109:31, 20 May 2024 diff hist +482 Training →Sapelo2 Cluster New User Training Tag: Visual edit
14 May 2024
- 11:2411:24, 14 May 2024 diff hist +17,183 N IQ-Tree-Sapelo2 Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 1.6.12, 2.2.2.6 ===Author / Distributor=== Please see http://www.iqtree.org/ ===Description=== Efficient phylogenomic software by maximum likelihood. More information: http://www.iqtree.org/ === Running Program === *Version 2.2.2.6, installed in /apps/eb/IQ-TREE/2.2.2.6-gompi-2022a To use this version of IQ-TREE,..." current
- 11:2311:23, 14 May 2024 diff hist −16 Software →Partial List of Installed Software
- 11:2211:22, 14 May 2024 diff hist +11,848 N HISAT2-Sapelo2 Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.2.1, 3 === Author / Distributor === [https://ccb.jhu.edu/software/hisat2/index.shtml HISAT2] === Description === "HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome)." More..." current
- 11:2111:21, 14 May 2024 diff hist −5 Software →Partial List of Installed Software
- 11:1511:15, 14 May 2024 diff hist +2,566 N EIGENSOFT-Sapelo2 Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 7.2.1 ===Author / Distributor=== [https://www.hsph.harvard.edu/alkes-price/software/ EIGENSOFT] ===Description=== The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method use..." current
- 11:1411:14, 14 May 2024 diff hist −12 Software →Partial List of Installed Software
- 11:1411:14, 14 May 2024 diff hist +2,987 N Cytoscape-Sapelo2 Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 3.9.1 === Author / Distributor === Please see https://cytoscape.org/ === Description === "Cytoscape is an open source software tool for integrating, visualizing, and analyzing data in the context of networks." more details at [http://www.cytoscape.org/documentation_users.html CytoScape] === Running Program ===..." current
- 11:1311:13, 14 May 2024 diff hist −12 Software →Partial List of Installed Software
- 10:3710:37, 14 May 2024 diff hist −309 Bowtie2-Sapelo2 →Running Program Tag: Visual edit
- 10:3610:36, 14 May 2024 diff hist +11,006 N Bowtie2-Sapelo2 Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.4.1, 2.4.4, 2.4.5, 2.5.2 === Author / Distributor === [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie2] === Description === "Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or..."
- 10:3310:33, 14 May 2024 diff hist −5 Software →Partial List of Installed Software
- 10:3210:32, 14 May 2024 diff hist +7,183 N BLAST-Sapelo2 Created page with "Category:TeachingCategory:SoftwareCategory:Bioinformatics === Category === Bioinformatics === Program On === Sapelo2 === Version === 2.2.26 === Author / Distributor === [http://blast.ncbi.nlm.nih.gov/ BLAST] === Description === "Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences." More details..." current
- 10:3210:32, 14 May 2024 diff hist −5 Software →Partial List of Installed Software
- 10:1210:12, 14 May 2024 diff hist +25 Software →Partial List of Installed Software
- 10:1010:10, 14 May 2024 diff hist +10 Software →Partial List of Installed Software
- 08:4208:42, 14 May 2024 diff hist +19 Software →Partial List of Installed Software
- 08:4208:42, 14 May 2024 diff hist −18 UBCG-Sapelo2 →Running Program current Tag: Visual edit
- 08:4008:40, 14 May 2024 diff hist +1 Structure-Teaching →Running Program current Tag: Visual edit
- 08:3908:39, 14 May 2024 diff hist 0 Structure-Sapelo2 →Running Program current Tag: Visual edit
- 08:3708:37, 14 May 2024 diff hist +40 StringTie-Teaching →Running Program current Tag: Visual edit
- 08:3608:36, 14 May 2024 diff hist −13 SRAToolKit-Sapelo2 →Version Tag: Visual edit
- 08:3308:33, 14 May 2024 diff hist +6 SAMtools-Teaching →Version current Tag: Visual edit
- 07:5307:53, 14 May 2024 diff hist −282 Training →Sapelo2 Cluster New User Training Tag: Visual edit
- 07:4907:49, 14 May 2024 diff hist +15 Rosetta-Sapelo2 →Version Tag: Visual edit
- 07:4807:48, 14 May 2024 diff hist −3 RAxML-Teaching →Running Program current Tag: Visual edit
- 07:4607:46, 14 May 2024 diff hist +175 RevBayes-Teaching →Version current Tag: Visual edit
- 07:3907:39, 14 May 2024 diff hist −7 RAxML-Sapelo2 →Version current Tag: Visual edit
- 07:3707:37, 14 May 2024 diff hist +43 Software →Partial List of Installed Software
- 07:3607:36, 14 May 2024 diff hist +14 R-Teaching →Version current Tag: Visual edit
- 07:3607:36, 14 May 2024 diff hist +14 R-Sapelo2 →Version Tag: Visual edit
- 07:2807:28, 14 May 2024 diff hist +175 QIIME2-Sapelo2 →Documentation current Tag: Visual edit
- 07:2607:26, 14 May 2024 diff hist +35 QIIME2-Sapelo2 →Version Tag: Visual edit
13 May 2024
- 15:5115:51, 13 May 2024 diff hist +95 Software →Partial List of Installed Software
- 15:5015:50, 13 May 2024 diff hist +8 Python-Teaching →Program On current Tag: Visual edit
- 15:5015:50, 13 May 2024 diff hist +8 Python-Sapelo2 →Version Tag: Visual edit
- 15:4915:49, 13 May 2024 diff hist +56 Perl-Teaching →Version current Tag: Visual edit
- 15:4715:47, 13 May 2024 diff hist +8 PAML-Teaching →Version current Tag: Visual edit
- 15:4615:46, 13 May 2024 diff hist +7 OrthoFinder-Sapelo2 →Version Tag: Visual edit
- 15:4515:45, 13 May 2024 diff hist +7 ORP-Sapelo2 →Version current Tag: Visual edit
- 15:4415:44, 13 May 2024 diff hist +30 Software →Partial List of Installed Software
- 13:5313:53, 13 May 2024 diff hist −4,389 Ont-Guppy-Sapelo2 →Version current Tag: Visual edit
- 13:1913:19, 13 May 2024 diff hist +8,082 Mothur-Sapelo2 →Version current Tag: Visual edit
- 11:3411:34, 13 May 2024 diff hist +7 MetaPhlAn4-Sapelo2 →Version Tag: Visual edit
- 11:3211:32, 13 May 2024 diff hist −9 MATLAB-Sapelo2 →Version Tag: Visual edit
- 08:5008:50, 13 May 2024 diff hist +218 Software No edit summary
- 08:0708:07, 13 May 2024 diff hist +1,263 Software No edit summary Tag: Manual revert