Phenix-Sapelo2: Difference between revisions

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=== Version ===
=== Version ===
   
   
1.19.2-4158
1.21.2-5419
   
   
=== Author / Distributor ===
=== Author / Distributor ===
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Also refer to [[Running Jobs on Sapelo2]]
Also refer to [[Running Jobs on Sapelo2]]
   
   
*Version 1.19.2-4158 is installed in /apps/eb/Phenix/1.19.2-4158-foss-2019b-Rosetta-2021.16.61629/phenix-1.19.2-4158
*Version 1.21.2-5419 is installed in /apps/eb/Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371/phenix-1.21.2-5419


To use this program, please first load the module with
To use this program, please first load the module with
<pre class="gcommand">
<pre class="gcommand">
ml Phenix/1.19.2-4158-foss-2019b-Rosetta-2021.16.61629
ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371
</pre>
</pre>


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# Start an [https://wiki.gacrc.uga.edu/wiki/OnDemand#X_Desktop_Session_.28A.K.A._The_Interactive_X_login_app.29 X Desktop Session] via [https://ondemand.gacrc.uga.edu/pun/sys/dashboard/ Open OnDemand]
# Start an [https://wiki.gacrc.uga.edu/wiki/OnDemand#X_Desktop_Session_.28A.K.A._The_Interactive_X_login_app.29 X Desktop Session] via [https://ondemand.gacrc.uga.edu/pun/sys/dashboard/ Open OnDemand]
# Open the Terminal application in your X Desktop session (icon at the bottom of the Desktop or via the "Applications" button in the top left)
# Open the Terminal application in your X Desktop session (icon at the bottom of the Desktop or via the "Applications" button in the top left)
# <code>ml Phenix/1.19.2-4158-foss-2019b-Rosetta-2021.16.61629</code>
# <code>ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371</code>
# <code>source $PHENIXHOME/phenix_env.sh</code>
# <code>source $PHENIXHOME/phenix_env.sh</code>
# <code>phenix</code>
# <code>phenix</code>

Latest revision as of 15:55, 5 November 2024

Category

Bioinformatics

Program On

Sapelo2

Version

1.21.2-5419

Author / Distributor

Please see https://www.phenix-online.org/

Description

PHENIX stands for Python-based Hierarchical ENvironment for Integrated Xtallography and it is a software suite for the automated determination of molecular structures using X-ray crystallography and other methods. For more information, please see https://www.phenix-online.org/

Running Program

Also refer to Running Jobs on Sapelo2

  • Version 1.21.2-5419 is installed in /apps/eb/Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371/phenix-1.21.2-5419

To use this program, please first load the module with

ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371

This program has a graphical interface. Please refer to X Desktop Sessions in Open OnDemand.


To run this program in an interactive session using the graphical front end:

  1. Start an X Desktop Session via Open OnDemand
  2. Open the Terminal application in your X Desktop session (icon at the bottom of the Desktop or via the "Applications" button in the top left)
  3. ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371
  4. source $PHENIXHOME/phenix_env.sh
  5. phenix

Documentation

Please see https://www.phenix-online.org/documentation/ and https://www.phenix-online.org/documentation/faqs/index.html

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Installation

Code downloaded from https://www.phenix-online.org/download/

System

64-bit Linux