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<!-- | [[albacore-Sapelo2|Albacore]] || 2.3.4-cp35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[albacore-Sapelo2|Albacore]] || 2.3.4-cp35 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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|<span id ="A"></span> [[AlphaFold-Sapelo2|AlphaFold 2]] || | |<span id ="A"></span> [[AlphaFold-Sapelo2|AlphaFold 2]] || 2.3.1, 2.3.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
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|<span id ="A"></span> [[AlphaFold3-Sapelo2|AlphaFold 3]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |<span id ="A"></span> [[AlphaFold3-Sapelo2|AlphaFold 3]] || 3.0.0, 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!-- | [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[AMBER-Sapelo2|AMBER]] || 22 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[AMBER-Sapelo2|AMBER]] || 22.4, 24.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[AMBER-Teaching|AMBER]] || 22 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[AMBER-Teaching|AMBER]] || 22.4, 24.3 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
<!-- | [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[AMOS-Sapelo2|AMOS]] || 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[BioPython-Sapelo2|BioPython]] || 1. | | [[BioPython-Sapelo2|BioPython]] || 1.76, 1.79, 1.80, 1.83, 1.84 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
|[[Biopython-Teaching|Biopython]] || 1. | |[[Biopython-Teaching|Biopython]] || 1.76, 1.79, 1.80, 1.83, 1.84 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[BLAST+-Sapelo2|BLAST+]] || 2. | | [[BLAST+-Sapelo2|BLAST+]] || 2.13.0, 2.14.1, 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] ||[[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[BLAST+-Teaching|BLAST+]] || 2. | | [[BLAST+-Teaching|BLAST+]] || 2.13.0, 2.14.1, 2.16.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[Bowtie2-Sapelo2|Bowtie2]] || 2. | | [[Bowtie2-Sapelo2|Bowtie2]] || 2.4.4, 2.4.5, 2.5.1, 2.5.2, 2.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[Bowtie2-Teaching|Bowtie2]] || 2.4. | | [[Bowtie2-Teaching|Bowtie2]] || 2.4.4, 2.4.5, 2.5.1, 2.5.2, 2.5.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!-- | [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[Bracken-Sapelo2|Bracken]] || 3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- --> | |- --> | ||
| [[BRAKER-Sapelo2|BRAKER]] || 2.1.6, 3.0.3, 3.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[BRAKER-Sapelo2|BRAKER]] || 2.1.6, 3.0.3, 3.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Cromwell-Sapelo2|Cromwell]] || 56 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Cromwell-Sapelo2|Cromwell]] || 56 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
|[[CUDA-Sapelo2|CUDA]] || | |[[CUDA-Sapelo2|CUDA]] || 11.7.0, 11.8.0, 12.1.1, 12.4.0, 12.6.0, 12.8.0 ||[[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!-- | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[cuDNN-Sapelo2|cuDNN]] || 7.0.4, 7.2.1.38, 7.4.2.24 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | <span id ="E"></span> [[EDGE-pro-Sapelo2|EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | <span id ="E"></span> [[EDGE-pro-Sapelo2|EDGE-pro]] || 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |||
| [[EGAPx-Sapelo2|EGAPx]] || N/A || [[:Category:Bioinformatics|Bioinformatics]] || N/A || [[File:Up20.png|20px|link=#top]] | |||
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<!-- | [[eggNOG-Mapper-Sapelo2|EggNOG-Mapper]] || 1.0.3, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[eggNOG-Mapper-Sapelo2|EggNOG-Mapper]] || 1.0.3, 2.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[GeneMarkES-Sapelo2| | | [[GeneMarkES-Sapelo2|GeneMarkET]] || 4.71 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | <!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[GObject-Introspection-Sapelo2|GObject-Introspection]] || 1.49.1, 1.54.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
|[[gocryptfs-Sapelo2|gocryptfs]] || 2.5.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- | |||
<!-- | [[grace-Sapelo2|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[grace-Sapelo2|grace]] || 5.1.25 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[GROCSVs-Sapelo2|GROCSVs]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
|<span id ="I"></span> [[GROMACS-Sapelo2 |GROMACS]] || | |<span id ="I"></span> [[GROMACS-Sapelo2 |GROMACS]] || 2023.4, 2024.4 ||[[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[GSL-Sapelo2|GSL]] || 1.16, 2.1, 2.3. 2.4, 2.5 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[HISAT2-Sapelo2|HISAT2]] || 2.2.1 | | [[HISAT2-Sapelo2|HISAT2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1 | | <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[IQ-Tree-Sapelo2|IQ-Tree]] || | | [[IQ-Tree-Sapelo2|IQ-Tree]] || 2.2.2.7, 2.3.5, 2.3.6, 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[IQ-Tree-Teaching|IQ-Tree]] || | | [[IQ-Tree-Teaching|IQ-Tree]] || 2.2.2.7, 2.3.5, 2.3.6, 3.0.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!-- | [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Java-Sapelo2|Java]] || 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144, 1.8.0_202 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
|<span id ="J"></span> [[Java-Teaching|Java]] || 1.8.0_241, 11.0. | |<span id ="J"></span> [[Java-Teaching|Java]] || 1.8.0_241, 1.8.0_311, 11.0.20, 17.0.6, 21.0.2, 21.0.5 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!-- | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[Jupyter-Sapelo2|Jupyter]] || | | [[Jupyter-Sapelo2|Jupyter]] || 6.5.6, 7.0.2, 7.2.0, 7.2.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
| [[Jupyter-Teaching|Jupyter]] || 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[Jupyter-Teaching|Jupyter]] || 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Magma-GPU-Sapelo2|Magma-GPU]] || 2.3.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
|<span id ="M"></span> [[Magma-Sapelo2|Magma]] || 2.27-1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |<span id ="M"></span> [[Magma-Sapelo2|Magma]] || 2.27-1, 2.28-27 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
<!-- | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[mahotas-Sapelo2|mahotas]] || 1.4.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Montreal Forced Aligner-Sapelo2|Montreal Forced Aligner]] || 1.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Montreal Forced Aligner-Sapelo2|Montreal Forced Aligner]] || 1.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
<!-- | |||
| [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
|- | |- | ||
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<!-- | [[PanOCT-Sapelo2|PanOCT]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[PanOCT-Sapelo2|PanOCT]] || 3.23 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
|- --> | |- --> | ||
| [[PASA-Sapelo2|PASA]] || 2.5.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
|- --> | |- --> | ||
<!-- | [[PASTA-Sapelo2|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[PASTA-Sapelo2|PASTA]] || 1.8.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[PEAR-Sapelo2|PEAR]] || 0.9.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Perl-Sapelo2|Perl]] || 5. | <!-- | [[Perl-Sapelo2|Perl]] || 5.34.0, 5.34.1, 5.36.0, 5.36.1, 5.38.0, 5.38.2, 5.40.0, 5.40.2 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Perl-Teaching|Perl]] || 5. | | [[Perl-Teaching|Perl]] || 5.34.0, 5.34.1, 5.36.0, 5.36.1, 5.38.0, 5.38.2, 5.40.0, 5.40.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Python-Sapelo2 |Python]] || 2.7.18, 3. | | [[Python-Sapelo2 |Python]] || 2.7.18, 3.9.6, 3.10.4, 3.10.8, 3.11.3, 3.11.5, 3.12.3, 3.13.1, 3.13.5 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Python-Teaching|Python]] || 2.7.18, 3. | | [[Python-Teaching|Python]] || 2.7.18, 3.9.6, 3.10.4, 3.10.8, 3.11.3, 3.11.5, 3.12.3, 3.13.1, 3.13.5 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| <span id ="R"></span>[[R-Sapelo2 |R]] || | | <span id ="R"></span>[[R-Sapelo2 |R]] || 4.2.1, 4.3.1, 4.3.2, 4.4.1, 4.4.2 ||[[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[R-Teaching|R]] || | | [[R-Teaching|R]] || 4.2.1, 4.3.1, 4.3.2, 4.4.1, 4.4.2 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[racon-Sapelo2 |Racon]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[racon-Sapelo2 |Racon]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[RAxML-NG-Sapelo2 |RAxML-NG]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[RAxML-NG-Sapelo2 |RAxML-NG]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[RAxML-Sapelo2 |RAxML]] || 8.2. | | [[RAxML-Sapelo2 |RAxML]] || 8.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[RAxML-Teaching|RAxML]] || 8.2. | | [[RAxML-Teaching|RAxML]] || 8.2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[Ray-Sapelo2 |Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[Ray-Sapelo2 |Ray]] || 2.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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|<span id ="S"></span> [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.6, 1.14, 1.16.1, 1. | |<span id ="S"></span> [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.6, 1.13, 1.14, 1.16.1, 1.18, 1.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[snpEff-Sapelo2|snpEff]] || 5.0e || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | |||
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<!-- | [[snpEff-Teaching|SnpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[snpEff-Teaching|SnpEff]] || 4.3t || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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<!-- | [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | <!-- | [[StringTie-Sapelo2|StringTie]] || 1.3.3, 1.3.4d, 2.0.3, 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[StringTie-Teaching|StringTie]] || 2.2. | | [[StringTie-Teaching|StringTie]] || 2.2.3, 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | | [[Structure-Sapelo2|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]] | ||
Latest revision as of 15:55, 9 January 2026
On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the Software on Sapelo2 page and on the teaching cluster at the Software on Teaching Cluster page.
Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Software on Sapelo2 or Software on Teaching Cluster.
To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
The file transfer nodes (xfer nodes) do not have environment modules installed. File transfer utilities are installed centrally on the xfer nodes and available on the users' default PATH. Such utilities include bs (basespace-cli), fpsync, rclone, rsync, etc. https://wiki.gacrc.uga.edu/wiki/Main_Page
Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 1300 software packages installed there. For more information, please see Software on Sapelo2.
Partial List of Installed Software
Last updated 2026-01-09. This is a partial list of installed software so there may be software or versions of software available on Sapelo2 which are not included in this table. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z