Software: Difference between revisions

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<!-- | [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
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|| <span id ="B"></span> [[Beast-Sapelo2|Beast]] || 1.10.4, 2.6.3, 2.7.3, 2.7.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|| <span id ="B"></span> [[Beast-Sapelo2|Beast]] || 1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.6.1-11162020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.6.1-11162020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BLAST+-Teaching|BLAST+]] || 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAST+-Teaching|BLAST+]] || 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
<!-- | [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Bowtie2-Sapelo2|Bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Bowtie2-Teaching|Bowtie2]] || 2.4.1, 2.4.4, 2.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[Bowtie2-Teaching|Bowtie2]] || 2.4.1, 2.4.4, 2.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
<!-- | [[braker-Sapelo2|braker]] || 2.0.5, 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[BRAKER-Sapelo2|BRAKER]] || 2.1.6, 3.0.3, 3.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|-
<!-- | [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
<!-- | [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Cytoscape-Sapelo2|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Cytoscape-Teaching|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[Cytoscape-Teaching|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
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<!-- |  [[DRAM-bio-Sapelo2|DRAM-bio]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- |  [[DRAM-bio-Sapelo2|DRAM-bio]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
|-->
| [[dMRIharmonization-Sapelo2|dMRIharmonization]] || 20240227 || [[:Category:Engineering|Engineering]]|| [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-->
<!-- | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="E"></span> [[EIGENSOFT-Teaching|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="E"></span> [[EIGENSOFT-Teaching|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[HISAT2-Sapelo2|HISAT2]] || 2.2.1, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[HISAT2-Sapelo2|HISAT2]] || 2.2.1, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->  
|- -->  
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.5.5, 1.6.5, 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[IQ-Tree-Teaching|IQ-Tree]] || 1.6.12|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[IQ-Tree-Teaching|IQ-Tree]] || 1.6.12|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Jupyter-Sapelo2|Jupyter]] || 5.0.0, 6.4.12, 6.5.2, 6.5.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Jupyter-Sapelo2|Jupyter]] || 6.4.12, 6.5.2, 6.5.4, 6.5.6, 7.0.3, 7.2.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Jupyter-Teaching|Jupyter]] || 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[Jupyter-Teaching|Jupyter]] || 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Meraculous-Sapelo2|Meraculous]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Meraculous-Sapelo2|Meraculous]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[MetaPhlAn4-Sapelo2|MetaPhlAn4]] || 4.0.3.1, 4.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[MetaPhlAn4-Sapelo2|MetaPhlAn4]] || 4.0.3.1, 4.0.6, 4.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[MrBayes-Sapelo2|MrBayes]] || 3.2.6, 3.2.7a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MrBayes-Sapelo2|MrBayes]] || 3.2.6, 3.2.7a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Phenix-Sapelo2|Phenix]] || 1.19.2-4158 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Phenix-Sapelo2|Phenix]] || 1.21.2-5419 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
| [[Pong-Sapelo2|Pong]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Pong-Sapelo2|Pong]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[RAxML-NG-Sapelo2 |RAxML-NG]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-NG-Sapelo2 |RAxML-NG]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[RAxML-Sapelo2 |RAxML]] || 8.2.11, 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-Sapelo2 |RAxML]] || 8.2.11, 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,499: Line 1,502:
<!-- | [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[smoke-Sapelo2|smoke]] || 4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[smoke-Sapelo2|smoke]] || 4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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Latest revision as of 15:56, 5 November 2024

On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the Software on Sapelo2 page and on the teaching cluster at the Software on Teaching Cluster page.

Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Software on Sapelo2 or Software on Teaching Cluster.

To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

The file transfer nodes (xfer nodes) do not have environment modules installed. File transfer utilities are installed centrally on the xfer nodes and available on the users' default PATH. Such utilities include bs (basespace-cli), fpsync, rclone, rsync, etc. https://wiki.gacrc.uga.edu/wiki/Main_Page

Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 1300 software packages installed there. For more information, please see Software on Sapelo2.

Partial List of Installed Software

Last updated 2024-11-05. This is a partial list of installed software so there may be software or versions of software available on Sapelo2 which are not included in this table. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
AlphaFold 2.2.4, 2.3.1, 2.3.4 Bioinformatics Sapelo2 Up20.png
AMBER 22 Chemistry Sapelo2 Up20.png
anvi'o 4, 5.1, 5.3, 5.4, 6.1, 7, 7.1 Bioinformatics sapelo2 Up20.png
basespace-cli 1.2.1 Bioinformatics Sapelo2 Up20.png
Beast 1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5 Bioinformatics Sapelo2 Up20.png
BioPython 1.75, 1.76, 1.78, 1.79, 1.81 Bioinformatics Sapelo2 Up20.png
Biopython 1.75, 1.76, 1.78, 1.79, 1.81 Bioinformatics Teaching Up20.png
BLAST+ 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 Bioinformatics Sapelo2 Up20.png
BLAST+ 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Sapelo2 Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
Bowtie2 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 Bioinformatics Sapelo2 Up20.png
Bowtie2 2.4.1, 2.4.4, 2.4.5 Bioinformatics Teaching Up20.png
BRAKER 2.1.6, 3.0.3, 3.0.8 Bioinformatics Sapelo2 Up20.png
BUSCO 2.0, 4.0.5, 5.4.7, 5.5.0 Bioinformatics Sapelo2 Up20.png
Cactus 1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0 Bioinformatics Sapelo2 Up20.png
Canu 2.2 Bioinformatics Sapelo2 Up20.png
CellRanger-ATAC 2.1.0 Bioinformatics Sapelo2 Up20.png
Chimera 1.16 Bioinformatics Teaching Up20.png
CryoSPARC 3.3.1 Engineering Sapelo2 Up20.png
Cromwell 56 Tools Sapelo2 Up20.png
CUDA 11.3.1, 11.4.1, 11.7.0, 12.0.0, 12.1.1 Programming Sapelo2 Up20.png
Cytoscape 3.9.1 Bioinformatics Sapelo2 Up20.png
Cytoscape 3.9.1 Bioinformatics Teaching Up20.png
dMRIharmonization 20240227 Engineering Sapelo2 Up20.png
EIGENSOFT 7.2.1 Bioinformatics Sapelo2 Up20.png
EIGENSOFT 7.2.1 Bioinformatics Teaching Up20.png
Flankophile 0.2.10 Bioinformatics Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Teaching Up20.png
GaussView 5, 6.1 Chemistry Sapelo2 Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
GEM 1.5.1 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.57, 4.71 Bioinformatics Sapelo2 Up20.png
GROMACS 2021.5, 2023.1, 2023.4 Chemistry Sapelo2 Up20.png
HISAT2 2.2.1, 3 Bioinformatics Sapelo2 Up20.png
HISAT2 2.2.1, 3 Bioinformatics Teaching Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
iCommands 4.2.8 Tools Sapelo2 Up20.png
InterProScan 5.63-95.0, 5.64-96.0, 5.66-98.0 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
Java 1.8.0_241, 11.0.16, 13.0.2, 15.0.1, 17.0.6 Programming Teaching Up20.png
Jupyter 6.4.12, 6.5.2, 6.5.4, 6.5.6, 7.0.3, 7.2.0 Programming Sapelo2 Up20.png
Jupyter 6.4.12 Programming Teaching Up20.png
LAMMPS 23Jun2022 Chemistry Sapelo2 Up20.png
Magma 2.27-1 Other Sapelo2 Up20.png
Maker 3.01.04 Bioinformatics Sapelo2 Up20.png
MATLAB R2023a, R2023b Programming Sapelo2 Up20.png
Medusa 1.6 Bioinformatics Sapelo2 Up20.png
MetaPhlAn4 4.0.3.1, 4.0.6, 4.1.1 Bioinformatics Sapelo2 Up20.png
MOTECC_qmdcp 90 Chemistry Teaching Up20.png
Mothur 1.45.0 Bioinformatics Sapelo2 Up20.png
Ont-Guppy 6.5.7 Bioinformatics Sapelo2 Up20.png
ORCA 4.2.1, 5.0.4 Chemistry Sapelo2 Up20.png
ORP 2.2.6, 2.2.8 Bioinformatics Sapelo2 Up20.png
OrthoFinder 2.5.4, 2.5.5 Bioinformatics Sapelo2 Up20.png
PAML 4.9j, 4.10.5 Bioinformatics Teaching Up20.png
Perl 5.30.0, 5.30.2, 5.32.0, 5.32.1, 5.34.0, 5.34.1, 5.36.0, 5.36.1 Programming Teaching Up20.png
Phenix 1.21.2-5419 Bioinformatics Sapelo2 Up20.png
Python 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4, 3.10.8 Programming Sapelo2 Up20.png
Python 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4, 3.10.8 Programming Teaching Up20.png
QIIME2 2020.6, 2023.2, 2023.5.1, 2023.7, 2023.9, 2024.2 Bioinformatics Sapelo2 Up20.png
R 3.6.2, 4.1.2, 4.2.1, 4.3.1, 4.3.2 Statistics Sapelo2 Up20.png
R 3.6.2, 4.1.2, 4.2.1, 4.3.1, 4.3.2 Statistics Teaching Up20.png
Racon 1.5.0 Bioinformatics Sapelo2 Up20.png
RAxML-NG 1.2.2 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.11, 8.2.12 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.12 Bioinformatics Teaching Up20.png
RevBayes 1.1.0, 1.2.1 Bioinformatics Teaching Up20.png
Rosetta 2021.16.61629, 2022.46.334 Chemistry Sapelo2 Up20.png
Rstudio 2023.06.1-524 Other Sapelo2 Up20.png
SAMtools 0.1.20, 1.6, 1.14, 1.16.1, 1.17 Bioinformatics Teaching Up20.png
sequenceTubeMap 20230906 Bioinformatics sapelo2 Up20.png
SRAToolKit 3.0.1, 3.0.3 Bioinformatics Sapelo2 Up20.png
StringTie 2.2.1 Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
Structure 2.3.4 Bioinformatics Teaching Up20.png
Trinity 2.5.1, 2.8.4, 2.8.5, 2.15.1 Bioinformatics Sapelo2 Up20.png
UBCG 3.0 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png

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