OnDemand/Current Annoucements: Difference between revisions
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Bcarpenter (talk | contribs) (Created page with "== Important Notice: IGV App Unavailable, run IGV from X Desktop == The IGV app is currently not functional. However, you can still run IGV through an X Desktop session in Open OnDemand. To do this: * Start an X Desktop session on Sapelo2 within OnDemand. * Select your desired resources (e.g., number of cores, memory, walltime limit, partition, etc.). * Once the job is running and the X Desktop session is launched, open a Terminal in the X Desktop environment. * Load...") |
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Latest revision as of 08:33, 26 September 2025
The IGV app is currently not functional. However, you can still run IGV through an X Desktop session in Open OnDemand.
To do this:
- Start an X Desktop session on Sapelo2 within OnDemand.
- Select your desired resources (e.g., number of cores, memory, walltime limit, partition, etc.).
- Once the job is running and the X Desktop session is launched, open a Terminal in the X Desktop environment.
- Load the IGV module and start the application using the following commands:
ml IGV/2.19.1-Java-21
igv.sh
The igv.sh command should open the IGV GUI.