Software: Difference between revisions

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|<span id ="A"></span> [[AlphaFold-Sapelo2|AlphaFold]] || 2.2.4, 2.3.1, 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|<span id ="A"></span> [[AlphaFold-Sapelo2|AlphaFold]] || 2.2.4, 2.3.1, 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[AlignGraph-Sapelo2|AlignGraph]] || 20180709 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[ALLMAPS-Sapelo2|ALLMAPS]] || 20190208 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->|[[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[AMBER-Sapelo2|AMBER]] || 22 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[AMBER-Teaching|AMBER]] || 22 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[AMBER-Teaching|AMBER]] || 22 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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| [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1, 7, 7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[anvi'o-Sapelo2|anvi'o]] || 4, 5.1, 5.3, 5.4, 6.1, 7, 7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Apollo-Sapelo2|Apollo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Apollo-Sapelo2|Apollo]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[basespace-cli-Sapelo2|basespace-cli]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[basespace-cli-Sapelo2|basespace-cli]] || 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Basset-Sapelo2|Basset]] || 20200107 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Basset-Sapelo2|Basset]] || 20200107 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[bcl2fastq-Sapelo2|bcl2fastq]] || 2.20.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|| <span id ="B"></span> [[Beast-Sapelo2|Beast]] || 1.10.4, 2.6.3, 2.7.3, 2.7.5 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|| <span id ="B"></span> [[Beast-Sapelo2|Beast]] || 1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BEDOPS-Sapelo2|BEDOPS]] || 2.4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Biom-format-Sapelo2|Biom-format]] || 2.1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.6.1-11162020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BionanoSolve-Sapelo2|BionanoSolve]] || 3.6.1-11162020 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BioPerl-Sapelo2|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BioPerl-Teaching|BioPerl]] || 1.7.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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| [[BioPython-Sapelo2|BioPython]] || 1.75, 1.76, 1.78, 1.79, 1.81 ||[[:Category:Bioinformatics|Bioinformatics]]  
| [[BioPython-Sapelo2|BioPython]] || 1.75, 1.76, 1.78, 1.79, 1.81 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|[[Biopython-Teaching|Biopython]] || 1.75, 1.76, 1.78, 1.79, 1.81 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|[[Biopython-Teaching|Biopython]] || 1.75, 1.76, 1.78, 1.79, 1.81 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Bismark-Sapelo2|Bismark]] || 0.20.0, 0.22.1, 0.22.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BLASR-Sapelo2|BLASR]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BLAST+-Sapelo2|BLAST+]] ||[[File:Up20.png|20px|link=#top]]
| [[BLAST+-Sapelo2|BLAST+]] || 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] ||[[File:Up20.png|20px|link=#top]]  
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| [[BLAST+-Teaching|BLAST+]] || 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAST+-Teaching|BLAST+]] || 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[BLAST-Sapelo2|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]]  
| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BLAT-Sapelo2|BLAT]] || 3.4, 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BLAT-Sapelo2|BLAT]] || 3.4, 3.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Boto3-Sapelo2|Boto3]] || 1.9.14 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[bowtie2-Sapelo2|bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Bowtie2-Sapelo2|Bowtie2]] || 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[Bowtie2-Teaching|Bowtie2]] || 2.4.1, 2.4.4, 2.4.5, 2.5.2 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[Bowtie2-Teaching|Bowtie2]] || 2.4.1, 2.4.4, 2.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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|-
<!-- | [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Bowtie-Sapelo2|Bowtie]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Bracken-Sapelo2|Bracken]] || 2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[braker-Sapelo2|braker]] || 2.0.5, 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[BRAKER-Sapelo2|BRAKER]] || 2.1.6, 3.0.3, 3.0.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BreakDancer-Sapelo2|BreakDancer]] || 1.4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BS-Seeker2-Sapelo2|BS-Seeker2]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BS-Seeker2-Sapelo2|BS-Seeker2]] || 2.1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[BUSCO-Sapelo2|BUSCO]] || 2.0, 4.0.5, 5.4.7, 5.5.0 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[BUSCO-Sapelo2|BUSCO]] || 2.0, 4.0.5, 5.4.7, 5.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[BUSCO-Teaching|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[BUSCO-Teaching|BUSCO]] || 3.0.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | <span id ="C"></span> [[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="C"></span> [[Caffe-Sapelo2|Caffe]] || 04082018 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|<span id ="C"></span>  [[Cactus-Sapelo2|Cactus]] ||[[File:Up20.png|20px|link=#top]]
|<span id ="C"></span>  [[Cactus-Sapelo2|Cactus]] || 1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[cairo-Sapelo2|cairo]] || 1.14.6, 1.14.10, 1.14.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[Canu-Sapelo2|Canu]] || 2.2||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]]  
| [[Canu-Sapelo2|Canu]] || 2.2||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[canu-Teaching|Canu]] || 1.4, 1.5, 1.6, 1.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Cellrange-Sapelo2|Cellrange]] || 3.0.1, 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Cellrange-Sapelo2|Cellrange]] || 3.0.1, 3.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[CellRanger-ATAC-Sapelo2|CellRanger-ATAC]] || 2.1.0 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
| [[CellRanger-ATAC-Sapelo2|CellRanger-ATAC]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[CENSOR-Sapelo2|CENSOR]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[CENSOR-Sapelo2|CENSOR]] || 4.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[Chimera-Teaching|Chimera]] || 1.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[Chimera-Teaching|Chimera]] || 1.16 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Chromosomer-Sapelo2|Chromosomer]] || 0.1.3, 0.1.4a0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[CythonGSL-Sapelo2|CythonGSL]] || 0.2.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Cytoscape-Sapelo2|Cytoscape]] || 3.7.2, 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Cytoscape-Sapelo2|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[Cytoscape-Teaching|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[Cytoscape-Teaching|Cytoscape]] || 3.9.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Teaching]] || [[File:Up20.png|20px|link=#top]]
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<!-- |  [[DRAM-bio-Sapelo2|DRAM-bio]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- |  [[DRAM-bio-Sapelo2|DRAM-bio]] || 1.4.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|-->
| [[dMRIharmonization-Sapelo2|dMRIharmonization]] || 20240227 || [[:Category:Engineering|Engineering]]|| [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-->
<!-- | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[dRep-Sapelo2|dRep]] || 2.3.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Eigen-Sapelo2|Eigen]] || 3.2.3, 3.3.5 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 6.1.4, 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[EIGENSOFT-Sapelo2|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="E"></span> [[EIGENSOFT-Teaching|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="E"></span> [[EIGENSOFT-Teaching|EIGENSOFT]] || 7.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|
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| [[Flankophile-Sapelo2|Flankophile]] || 0.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Flankophile-Sapelo2|Flankophile]] || 0.2.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 519: Line 514:
|<span id ="G"></span>  [[GAUSSIAN-Sapelo2|GAUSSIAN]] || 09, 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|<span id ="G"></span>  [[GAUSSIAN-Sapelo2|GAUSSIAN]] || 09, 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
|[[GAUSSIAN-Teaching|GAUSSIAN]] || 09, 16 ||[[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|[[GAUSSIAN-Teaching|GAUSSIAN]] || 09, 16 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
| [[GaussView-Sapelo2|GaussView]] || 5, 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[GaussView-Sapelo2|GaussView]] || 5, 6.1 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 545: Line 540:
<!-- | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[GeneMark.hmm.eukaryotic-Sapelo2|GeneMark.hmm.eukaryotic]] || 4.30 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.71 ||[[:Category:Bioinformatics|Bioinformatics]]  
| [[GeneMarkES-Sapelo2|GeneMarkES]] || 4.57, 4.71 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!--| [[GeneMarkES-Teaching|GeneMarkES]] || 4.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 653: Line 648:
<!-- | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[hindex-Sapelo2|hindex]] || 1.42 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[HISAT2-Sapelo2|HISAT2]] || 2.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[HISAT2-Sapelo2|HISAT2]] || 2.2.1, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1, 3 ||[[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="H"></span>[[HISAT2-Teaching|HISAT2]] || 2.2.1, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->  
|- -->  
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[HMMER-Sapelo2|HMMER]] || 2.3, 3.1b2, 3.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 663: Line 658:
<!-- | [[Homer-Teaching|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Homer-Teaching|Homer]] || 4.9.1, 4.10, 4.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[HpcGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2  
| [[HpcGridRunner-Sapelo2|HPCGridRunner]] || 1.0.2 || [[:Category:Tools|Tools]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
<!-- | [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[htop-Sapelo2|htop]] || 2.0.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 716: Line 711:
<!-- | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[IPython-Sapelo2|IPython]] || 5.3.0, 6.2.1, 7.5.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.5.5, 1.6.5, 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[IQ-Tree-Sapelo2|IQ-Tree]] || 1.6.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[IQ-Tree-Teaching|IQ-Tree]] ||[[File:Up20.png|20px|link=#top]]
| [[IQ-Tree-Teaching|IQ-Tree]] || 1.6.12|| [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-  
|-  
<!-- | [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[IRMA-Sapelo2|IRMA]] || 0.6.7, 0.9.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 737: Line 732:
|- -->
|- -->
|<span id ="J"></span> [[Java-Teaching|Java]] || 1.8.0_241, 11.0.16, 13.0.2, 15.0.1, 17.0.6 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|<span id ="J"></span> [[Java-Teaching|Java]] || 1.8.0_241, 11.0.16, 13.0.2, 15.0.1, 17.0.6 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|
|-  
|-  
<!-- | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[jcvi-Sapelo2|jcvi]] || 0.8.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 751: Line 745:
<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[JUnit-Sapelo2|JUnit]] || 4.12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Jupyter-Sapelo2|Jupyter]] || 5.0.0, 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Jupyter-Sapelo2|Jupyter]] || 6.4.12, 6.5.2, 6.5.4, 6.5.6, 7.0.3, 7.2.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Jupyter-Teaching|Jupyter]] || 6.0.2 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
| [[Jupyter-Teaching|Jupyter]] || 6.4.12 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]
|-
|-
|- -->
|- -->
Line 860: Line 854:
<!-- | [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MAJIQ-Sapelo2|MAJIQ]] || 2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Maker-Sapelo2|Maker]] || 3.01.04 ||[[:Category:Bioinformatics|Bioinformatics]]  
| [[Maker-Sapelo2|Maker]] || 3.01.04 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
<!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Maker-Teaching|Maker]] || 2.31.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 880: Line 874:
<!-- | [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Mathematica-Sapelo2|Mathematica]] || 12.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[MATLAB-Sapelo2|MATLAB]] || R2023a || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[MATLAB-Sapelo2|MATLAB]] || R2023a, R2023b || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
<!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MatLab-Teaching|Matlab]] || R2018b || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
Line 914: Line 908:
<!-- | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MEME-Sapelo2|MEME]] || 4.11.0, 5.0.0_1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Meraculous-Sapelo2|Meraculous]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Meraculous-Sapelo2|Meraculous]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Mercurial-Sapelo2 |Mercurial]] || 4.4.2 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 928: Line 922:
<!-- | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MetaCLADE-Sapelo2|MetaCLADE]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[MetaPhlAn4-Sapelo2|MetaPhlAn4]] || 4.0.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[MetaPhlAn4-Sapelo2|MetaPhlAn4]] || 4.0.3.1, 4.0.6, 4.1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MetaPhlAn2-Sapelo2|MetaPhlAn2]] || 2.7.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 980: Line 974:
| [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[MOTECC_qmdcp-Teaching|MOTECC_qmdcp]] || 90 || [[:Category:Chemistry|Chemistry]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[Mothur-Sapelo2|Mothur]] || 1.39.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Mothur-Sapelo2|Mothur]] || 1.45.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[motif-Sapelo2|motif]] || 2.3.5, 2.3.8 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 986: Line 980:
<!-- | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MPJ-Express-Sapelo2|MPJ-Express]] || 0.44 || [[:Category:Library|Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[MrBayes-Sapelo2|MrBayes]] || 3.2.6, 3.2.7a || [[:Category:Bioinformatics|Bioinformatics]]  
<!-- | [[MrBayes-Sapelo2|MrBayes]] || 3.2.6, 3.2.7a || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MREPS-Sapelo2|MREPS]] || 1.0.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,088: Line 1,082:
<!-- | [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
|<span id ="O"></span> [[Ont-Guppy-Sapelo2|Ont-Guppy]] || 4.4.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|<span id ="O"></span> [[Ont-Guppy-Sapelo2|Ont-Guppy]] || 6.5.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[OpenBUGS-Sapelo2|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OpenBUGS-Sapelo2|OpenBUGS]] || 3.2.3 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,099: Line 1,093:
|- -->
|- -->
<!-- | [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OpenSlide-Python-Sapelo2|OpenSlide-Python]] || 1.1.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->|[[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
| [[ORCA-Sapelo2 |ORCA]] || 4.2.1, 5.0.4 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OrfM-Sapelo2|OrfM]] || 0.6.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,109: Line 1,104:
<!-- | [[ORGanelle_ASeMbler-Sapelo2|ORGASM]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[ORGanelle_ASeMbler-Sapelo2|ORGASM]] || 0.2.03 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
|[[ORP-Sapelo2|ORP]] ||[[File:Up20.png|20px|link=#top]]
|[[ORP-Sapelo2|ORP]] || 2.2.6, 2.2.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.5.4 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[OrthoFinder-Sapelo2|OrthoFinder]] || 2.5.4, 2.5.5 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OrthoFinder-Teaching|OrthoFinder]] || 2.1.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]]  
<!-- | [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,129: Line 1,124:
<!-- | [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PAML-Sapelo2|PAML]] || 4.9h || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
|<span id ="P"></span> [[PAML-Teaching|PAML]] || 4.9j || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|<span id ="P"></span> [[PAML-Teaching|PAML]] || 4.9j, 4.10.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->  
|- -->  
<!-- | [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PANDAseq-Sapelo2 |PANDAseq]] || 2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,177: Line 1,172:
<!-- | [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Perl-Sapelo2|Perl]] || 5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Perl-Teaching|Perl]] || 5.34.1 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[Perl-Teaching|Perl]] || 5.30.0, 5.30.2, 5.32.0, 5.32.1, 5.34.0, 5.34.1, 5.36.0, 5.36.1 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PETSc-Sapelo2|PETSc]] || 3.8.4 || [[:Category:Math Library|Math Library]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PHASIS-Sapelo2 |PHASIS]] || 3.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Phenix-Sapelo2|Phenix]] || 1.19.2-4158 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Phenix-Sapelo2|Phenix]] || 1.21.2-5419 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
| [[Pong-Sapelo2|Pong]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Pong-Sapelo2|Pong]] || 1.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Phobius-Sapelo2|Phobius]] || 1.01 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
|- -->
|-
|-
| [[Python-Sapelo2 |Python]] || 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Python-Sapelo2 |Python]] || 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4, 3.10.8 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[Python-Teaching|Python]] || 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4|| [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[Python-Teaching|Python]] || 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4, 3.10.8 || [[:Category:Programming|Programming]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PyTorch-Sapelo2|PyTorch]] || 0.3.1, 1.0.0, 1.2.0, 1.3.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[qiaseq-16S-Sapelo2|qiaseq-16S]] || 20190306 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
| [[QIIME2-Sapelo2|QIIME2]] || 2019.10, 2020.2, 2020.6, 2020.11 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[QIIME2-Sapelo2|QIIME2]] || 2020.6, 2023.2, 2023.5.1, 2023.7, 2023.9, 2024.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[QIIME2-Teaching|QIIME2]] || 2018.4, 2018.6, 2018.8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|- -->
|- -->
| <span id ="R"></span>[[R-Sapelo2 |R]] || 4.1.2, 4.2.1, 4.3.1 ||[[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| <span id ="R"></span>[[R-Sapelo2 |R]] || 3.6.2, 4.1.2, 4.2.1, 4.3.1, 4.3.2 ||[[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[R-Teaching|R]] || 4.1.2, 4.2.1, 4.3.1 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[R-Teaching|R]] || 3.6.2, 4.1.2, 4.2.1, 4.3.1, 4.3.2 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[racon-Sapelo2 |Racon]] || 1.4.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[racon-Sapelo2 |Racon]] || 1.5.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[racon-Teaching |racon]] || 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[racon-Teaching |racon]] || 1.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RATT-Sapelo2|RATT]] || 20180710 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
<!-- | [[RAxML-NG-Sapelo2 |RAxML-NG]] || 0.7.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-NG-Sapelo2 |RAxML-NG]] || 1.2.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->|[[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
| [[RAxML-Sapelo2 |RAxML]] || 8.2.11, 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[RAxML-Teaching|RAxML]] || 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[RAxML-Teaching|RAxML]] || 8.2.12 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[RevBayes-Sapelo2|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RevBayes-Sapelo2|RevBayes]] || 1.0.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
| [[RevBayes-Teaching|RevBayes]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]]  
| [[RevBayes-Teaching|RevBayes]] || 1.1.0, 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|-  
|-  
<!-- | [[RGAugury-Sapelo2|RGAugury]] || 20191115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RGAugury-Sapelo2|RGAugury]] || 20191115 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Roary-Sapelo2 |Roary]] || 3.12.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
| [[Rosetta-Sapelo2 |Rosetta]] || 2022.46.334 ||[[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[Rosetta-Sapelo2 |Rosetta]] || 2021.16.61629, 2022.46.334 ||[[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[RSEM-Sapelo2 |RSEM]] || 1.3.0, 1.3.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[RSeQC-Sapelo2 |RSeQC]] || 3.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|- -->
| [[Rstudio-Sapelo2|Rstudio]] || 2023.06.1-524 || [[:Category:Other|Other]]  
| [[Rstudio-Sapelo2|Rstudio]] || 2023.06.1-524 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Ruby-Sapelo2|Ruby]] || 2.5.0 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SAMtools-Sapelo2|SAMtools]] || 0.1.19, 1.1, 1.3.1, 1.6, 1.9, 1.10 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
|<span id ="S"></span> [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.6, 1.14, 1.16.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
|<span id ="S"></span> [[SAMtools-Teaching|SAMtools]] || 0.1.20, 1.6, 1.14, 1.16.1, 1.17 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
<!-- | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SANN-Sapelo2|SANN]] || 20190528 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
| [[SequenceTubeMap-Sapelo2|sequenceTubeMap]] || 20230906 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]]  
| [[SequenceTubeMap-Sapelo2|sequenceTubeMap]] || 20230906 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:sapelo2|sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
<!-- | [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[sbt-Sapelo2|sbt]] || 1.1.1 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[slda-Sapelo2|slda]] || 0.1.6 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
| [[smoke-Sapelo2|smoke]] || 4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[smoke-Sapelo2|smoke]] || 4.7 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
<!-- | [[Smoove-Sapelo2|Smoove]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Smoove-Sapelo2|Smoove]] || 0.2.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SPM-Sapelo2|SPM]] || 12 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 2.9.6-1,2.10.8,2.11.1 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
| [[SRAToolKit-Sapelo2 |SRAToolKit]] || 3.0.1, 3.0.3 ||[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
<!-- | [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[sRNAWorkbench-Sapelo2|sRNAWorkbench]] || 4.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
Line 1,685: Line 1,681:
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|- -->
| <span id ="U"></span>[[UBCG-Sapelo2|UBCG]] || 3.0  
| <span id ="U"></span>[[UBCG-Sapelo2|UBCG]] || 3.0  
|[[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
|-
|-
<!-- | [[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]

Latest revision as of 15:56, 5 November 2024

On Sapelo2 and on the Teaching cluster users have the option to install their own software or use software installed centrally by the GACRC staff. Detailed information on how to find and access software packages installed on Sapelo2 are available at the Software on Sapelo2 page and on the teaching cluster at the Software on Teaching Cluster page.

Below is a very limited list of software packages installed on Sapelo2 and on the Teaching cluster. We only intend to make an application page for software packages that requires extra documentation not covered in Software on Sapelo2 or Software on Teaching Cluster.

To view a list of all modules installed on Sapelo2/Teaching, along with a short description of each module, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

The file transfer nodes (xfer nodes) do not have environment modules installed. File transfer utilities are installed centrally on the xfer nodes and available on the users' default PATH. Such utilities include bs (basespace-cli), fpsync, rclone, rsync, etc. https://wiki.gacrc.uga.edu/wiki/Main_Page

Note: Although we have not made individual software pages for the applications installed on Sapelo2, there are currently over 1300 software packages installed there. For more information, please see Software on Sapelo2.

Partial List of Installed Software

Last updated 2024-11-05. This is a partial list of installed software so there may be software or versions of software available on Sapelo2 which are not included in this table. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
AlphaFold 2.2.4, 2.3.1, 2.3.4 Bioinformatics Sapelo2 Up20.png
AMBER 22 Chemistry Sapelo2 Up20.png
anvi'o 4, 5.1, 5.3, 5.4, 6.1, 7, 7.1 Bioinformatics sapelo2 Up20.png
basespace-cli 1.2.1 Bioinformatics Sapelo2 Up20.png
Beast 1.10.4, 2.5.1, 2.6.3, 2.7.3, 2.7.5 Bioinformatics Sapelo2 Up20.png
BioPython 1.75, 1.76, 1.78, 1.79, 1.81 Bioinformatics Sapelo2 Up20.png
Biopython 1.75, 1.76, 1.78, 1.79, 1.81 Bioinformatics Teaching Up20.png
BLAST+ 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 Bioinformatics Sapelo2 Up20.png
BLAST+ 2.2.31, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Sapelo2 Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
Bowtie2 2.2.3, 2.3.3, 2.3.4.1, 2.3.4.2, 2.3.5.1 Bioinformatics Sapelo2 Up20.png
Bowtie2 2.4.1, 2.4.4, 2.4.5 Bioinformatics Teaching Up20.png
BRAKER 2.1.6, 3.0.3, 3.0.8 Bioinformatics Sapelo2 Up20.png
BUSCO 2.0, 4.0.5, 5.4.7, 5.5.0 Bioinformatics Sapelo2 Up20.png
Cactus 1.2.3, 2.0.3, 2.4.3, 2.4.4, 2.5.0, 2.6.0, 2.6.7, 2.6.9, 2.7.0 Bioinformatics Sapelo2 Up20.png
Canu 2.2 Bioinformatics Sapelo2 Up20.png
CellRanger-ATAC 2.1.0 Bioinformatics Sapelo2 Up20.png
Chimera 1.16 Bioinformatics Teaching Up20.png
CryoSPARC 3.3.1 Engineering Sapelo2 Up20.png
Cromwell 56 Tools Sapelo2 Up20.png
CUDA 11.3.1, 11.4.1, 11.7.0, 12.0.0, 12.1.1 Programming Sapelo2 Up20.png
Cytoscape 3.9.1 Bioinformatics Sapelo2 Up20.png
Cytoscape 3.9.1 Bioinformatics Teaching Up20.png
dMRIharmonization 20240227 Engineering Sapelo2 Up20.png
EIGENSOFT 7.2.1 Bioinformatics Sapelo2 Up20.png
EIGENSOFT 7.2.1 Bioinformatics Teaching Up20.png
Flankophile 0.2.10 Bioinformatics Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Sapelo2 Up20.png
GAUSSIAN 09, 16 Chemistry Teaching Up20.png
GaussView 5, 6.1 Chemistry Sapelo2 Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
GEM 1.5.1 Bioinformatics Sapelo2 Up20.png
GeneMarkES 4.57, 4.71 Bioinformatics Sapelo2 Up20.png
GROMACS 2021.5, 2023.1, 2023.4 Chemistry Sapelo2 Up20.png
HISAT2 2.2.1, 3 Bioinformatics Sapelo2 Up20.png
HISAT2 2.2.1, 3 Bioinformatics Teaching Up20.png
HPCGridRunner 1.0.2 Tools Sapelo2 Up20.png
iCommands 4.2.8 Tools Sapelo2 Up20.png
InterProScan 5.63-95.0, 5.64-96.0, 5.66-98.0 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Sapelo2 Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
Java 1.8.0_241, 11.0.16, 13.0.2, 15.0.1, 17.0.6 Programming Teaching Up20.png
Jupyter 6.4.12, 6.5.2, 6.5.4, 6.5.6, 7.0.3, 7.2.0 Programming Sapelo2 Up20.png
Jupyter 6.4.12 Programming Teaching Up20.png
LAMMPS 23Jun2022 Chemistry Sapelo2 Up20.png
Magma 2.27-1 Other Sapelo2 Up20.png
Maker 3.01.04 Bioinformatics Sapelo2 Up20.png
MATLAB R2023a, R2023b Programming Sapelo2 Up20.png
Medusa 1.6 Bioinformatics Sapelo2 Up20.png
MetaPhlAn4 4.0.3.1, 4.0.6, 4.1.1 Bioinformatics Sapelo2 Up20.png
MOTECC_qmdcp 90 Chemistry Teaching Up20.png
Mothur 1.45.0 Bioinformatics Sapelo2 Up20.png
Ont-Guppy 6.5.7 Bioinformatics Sapelo2 Up20.png
ORCA 4.2.1, 5.0.4 Chemistry Sapelo2 Up20.png
ORP 2.2.6, 2.2.8 Bioinformatics Sapelo2 Up20.png
OrthoFinder 2.5.4, 2.5.5 Bioinformatics Sapelo2 Up20.png
PAML 4.9j, 4.10.5 Bioinformatics Teaching Up20.png
Perl 5.30.0, 5.30.2, 5.32.0, 5.32.1, 5.34.0, 5.34.1, 5.36.0, 5.36.1 Programming Teaching Up20.png
Phenix 1.21.2-5419 Bioinformatics Sapelo2 Up20.png
Python 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4, 3.10.8 Programming Sapelo2 Up20.png
Python 2.7.18, 3.7.4, 3.8.6, 3.9.6, 3.10.4, 3.10.8 Programming Teaching Up20.png
QIIME2 2020.6, 2023.2, 2023.5.1, 2023.7, 2023.9, 2024.2 Bioinformatics Sapelo2 Up20.png
R 3.6.2, 4.1.2, 4.2.1, 4.3.1, 4.3.2 Statistics Sapelo2 Up20.png
R 3.6.2, 4.1.2, 4.2.1, 4.3.1, 4.3.2 Statistics Teaching Up20.png
Racon 1.5.0 Bioinformatics Sapelo2 Up20.png
RAxML-NG 1.2.2 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.11, 8.2.12 Bioinformatics Sapelo2 Up20.png
RAxML 8.2.12 Bioinformatics Teaching Up20.png
RevBayes 1.1.0, 1.2.1 Bioinformatics Teaching Up20.png
Rosetta 2021.16.61629, 2022.46.334 Chemistry Sapelo2 Up20.png
Rstudio 2023.06.1-524 Other Sapelo2 Up20.png
SAMtools 0.1.20, 1.6, 1.14, 1.16.1, 1.17 Bioinformatics Teaching Up20.png
sequenceTubeMap 20230906 Bioinformatics sapelo2 Up20.png
SRAToolKit 3.0.1, 3.0.3 Bioinformatics Sapelo2 Up20.png
StringTie 2.2.1 Bioinformatics Teaching Up20.png
Structure 2.3.4 Bioinformatics Sapelo2 Up20.png
Structure 2.3.4 Bioinformatics Teaching Up20.png
Trinity 2.5.1, 2.8.4, 2.8.5, 2.15.1 Bioinformatics Sapelo2 Up20.png
UBCG 3.0 Bioinformatics Sapelo2 Up20.png
Velvet 1.2.10 Bioinformatics Sapelo2 Up20.png

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