Phenix-Sapelo2: Difference between revisions
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=== Version === | === Version === | ||
1. | 1.21.2-5419 | ||
=== Author / Distributor === | === Author / Distributor === | ||
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Also refer to [[Running Jobs on Sapelo2]] | Also refer to [[Running Jobs on Sapelo2]] | ||
*Version 1. | *Version 1.21.2-5419 is installed in /apps/eb/Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371/phenix-1.21.2-5419 | ||
To use this program, please first load the module with | To use this program, please first load the module with | ||
<pre class="gcommand"> | <pre class="gcommand"> | ||
ml Phenix/1. | ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371 | ||
</pre> | </pre> | ||
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# Start an [https://wiki.gacrc.uga.edu/wiki/OnDemand#X_Desktop_Session_.28A.K.A._The_Interactive_X_login_app.29 X Desktop Session] via [https://ondemand.gacrc.uga.edu/pun/sys/dashboard/ Open OnDemand] | # Start an [https://wiki.gacrc.uga.edu/wiki/OnDemand#X_Desktop_Session_.28A.K.A._The_Interactive_X_login_app.29 X Desktop Session] via [https://ondemand.gacrc.uga.edu/pun/sys/dashboard/ Open OnDemand] | ||
# Open the Terminal application in your X Desktop session (icon at the bottom of the Desktop or via the "Applications" button in the top left) | # Open the Terminal application in your X Desktop session (icon at the bottom of the Desktop or via the "Applications" button in the top left) | ||
# <code>ml Phenix/1. | # <code>ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371</code> | ||
# <code>source $PHENIXHOME/phenix_env.sh</code> | # <code>source $PHENIXHOME/phenix_env.sh</code> | ||
# <code>phenix</code> | # <code>phenix</code> | ||
Latest revision as of 15:55, 5 November 2024
Category
Bioinformatics
Program On
Sapelo2
Version
1.21.2-5419
Author / Distributor
Please see https://www.phenix-online.org/
Description
PHENIX stands for Python-based Hierarchical ENvironment for Integrated Xtallography and it is a software suite for the automated determination of molecular structures using X-ray crystallography and other methods. For more information, please see https://www.phenix-online.org/
Running Program
Also refer to Running Jobs on Sapelo2
- Version 1.21.2-5419 is installed in /apps/eb/Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371/phenix-1.21.2-5419
To use this program, please first load the module with
ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371
This program has a graphical interface. Please refer to X Desktop Sessions in Open OnDemand.
To run this program in an interactive session using the graphical front end:
- Start an X Desktop Session via Open OnDemand
- Open the Terminal application in your X Desktop session (icon at the bottom of the Desktop or via the "Applications" button in the top left)
ml Phenix/1.21.2-5419-intel-2022a-Rosetta-3.14-release371source $PHENIXHOME/phenix_env.shphenix
Documentation
Please see https://www.phenix-online.org/documentation/ and https://www.phenix-online.org/documentation/faqs/index.html
Installation
Code downloaded from https://www.phenix-online.org/download/
System
64-bit Linux