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| [[SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SSAHA2]] || 2.5.5 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
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| [[SSAKE]] || v3-8 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
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| [[SSPACE]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[SSPACE]] || 2.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  

Revision as of 14:50, 4 March 2013

Installed Software List

Last updated 2013-03-04.

Note: Click on the icons to the right of the column headings to sort the table.

0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster
3D_DOCK 2.0 Chemistry Pcluster Up20.png
454 Software Bioinformatics Zcluster Up20.png
aaarf 1.0.0 Bioinformatics Zcluster Up20.png
ABINIT 6.12.1 Chemistry Zcluster Up20.png
ABySS 1.3.4 Bioinformatics Zcluster Up20.png
Admixture 1.22 Bioinformatics Zcluster Up20.png
ALLPATHS-LG 44254 Bioinformatics Zcluster Up20.png
AMBER 11, 12 Chemistry Zcluster Up20.png
AMBER-pcluster 8, 10 Chemistry Pcluster Up20.png
amos 3.1.0 Bioinformatics Zcluster Up20.png
AmpliconNoise 1.25 Bioinformatics Zcluster Up20.png
ARB 5.3 Bioinformatics Zcluster Up20.png
Aspera 3.1.0.67054 Other Zcluster Up20.png
AUGUSTUS 2.5.5 Bioinformatics Zcluster Up20.png
bam2fastq 1.1.0 Bioinformatics Zcluster Up20.png
BEAST 1.7.2 Bioinformatics Zcluster Up20.png
BEDTools 2.16.2 Bioinformatics Zcluster Up20.png
BEST 2.3.1 Bioinformatics Zcluster Up20.png
Bio++ 2.0.3 Bioinformatics Zcluster Up20.png
Bioconductor 2.11 Bioinformatics Zcluster Up20.png
BioPerl 1.61 Bioinformatics Zcluster Up20.png
BioPython 1.58 Bioinformatics Zcluster Up20.png
Bismark Bisulfite Mapper 0.7.6 Bioinformatics Zcluster Up20.png
BiSS 0.0.1 Bioinformatics Zcluster Up20.png
BLAS 3.0 Math Library Zcluster Up20.png
Blat 3.5 Bioinformatics Zcluster Up20.png
BMGE 1.1 Bioinformatics Zcluster Up20.png
Boost 1.47.0, 1.48.0 Library Zcluster Up20.png
bowtie 0.12.8 Bioinformatics Zcluster Up20.png
bowtie2 2.0.0-beta7 Bioinformatics Zcluster Up20.png
breakdancer 1.1_2011_02_21 Bioinformatics Zcluster Up20.png
brownie 2.1.2 Bioinformatics Zcluster Up20.png
BS Seeker Dec 113 Bioinformatics Zcluster Up20.png
Burrows-Wheeler Aligner (BWA) 0.6.2 Bioinformatics Zcluster Up20.png
cap3 10/2011 Bioinformatics Zcluster Up20.png
cd-hit 4.5.6 Bioinformatics Zcluster Up20.png
cdbfasta 04282012 Bioinformatics Zcluster Up20.png
CEAS 1.0.2 Bioinformatics Zcluster Up20.png
CEGMA 2.4.010312 Bioinformatics Zcluster Up20.png
circos 0.62 Bioinformatics Zcluster Up20.png
ClustalW 2.1 Bioinformatics Zcluster Up20.png
Coding Potential Calculator 0.9-r2 Bioinformatics Zcluster Up20.png
CONSEL v0.20 Bioinformatics Zcluster Up20.png
cortex_con 0.04c Bioinformatics Zcluster Up20.png
cortex_var 1.0.5.3 Bioinformatics Zcluster Up20.png
Count 2010-04-02 Bioinformatics Zcluster Up20.png
CREST 1.0 Bioinformatics Zcluster Up20.png
ctrax 0.3.2 Other Zcluster Up20.png
CUDA 4.0.17, 4.2.9, 5.0.35 Programming Zcluster Up20.png
cufflinks 2.0.2 Bioinformatics Zcluster Up20.png
cutadapt 1.1 Bioinformatics Zcluster Up20.png
demuxipy 1.0 Bioinformatics Zcluster Up20.png
DLCoal 1.0 Bioinformatics Zcluster Up20.png
drmma 0.5 Other Zcluster Up20.png
ea-utils 1.1.2-537 Bioinformatics Zcluster Up20.png
edena 3Dev120626 Bioinformatics Zcluster Up20.png
editag 1.1 Bioinformatics Zcluster Up20.png
EMBOSS 6.2.0 Bioinformatics Zcluster Up20.png
emmix 1.3 Bioinformatics Zcluster Up20.png
ESTscan 3.0.3 Bioinformatics Zcluster Up20.png
evm (EVidenceModeler) r2012-06-25 Bioinformatics Zcluster Up20.png
ExaML 315576 Bioinformatics Zcluster Up20.png
exonerate 2.2.0 Bioinformatics Zcluster Up20.png
FAR 2.15 Bioinformatics Zcluster Up20.png
FASTA 36 Bioinformatics Zcluster Up20.png
fasta format cleaner 1.0 Bioinformatics Zcluster Up20.png
fastphase 1.4.0 Bioinformatics Zcluster Up20.png
FastQC 0.10.1 Bioinformatics Zcluster Up20.png
fasttree 2.1.4 Bioinformatics Zcluster Up20.png
FastX 0.0.13, 0.0.13.2 Bioinformatics Zcluster Up20.png
FIRE 1.1 Bioinformatics Zcluster Up20.png
FitModel 0.5.3 Bioinformatics Zcluster Up20.png
FFTW 2.1.5, 3.3.0 Math Library Zcluster Up20.png
FLASH 1.0.3 Bioinformatics Zcluster Up20.png
GAMESS May2012R1 with XMVB 2.0. Chemistry Zcluster Up20.png
GAMESS-pcluster Mar. 24, 2007 R6, Apr.11, 2008 R1, Aug.11, 2011 Chemistry Pcluster Up20.png
GapFiller 1.11 Bioinformatics Zcluster Up20.png
gatk 2.2-2-gf44cc4e Bioinformatics Zcluster Up20.png
GAUSSIAN03 03 Chemistry Pcluster Up20.png
GAUSSIAN94 94 Chemistry Pcluster Up20.png
Gblocks 0.91b Bioinformatics Zcluster Up20.png
GDB 7.0.1 Debugger Zcluster Up20.png
GeneMark genemark-ES 2.3e gGeneMark version 2.5m Bioinformatics Zcluster Up20.png
Genome Phred version: 0.071220.c Bioinformatics Zcluster Up20.png
GenomeMapper 0.4.3 (Version for SHORE/WMD3) Bioinformatics Zcluster Up20.png
GenomeTools 1.3.9 Bioinformatics Zcluster Up20.png
git 1.7.4.1, 1.7.9 Other Zcluster Up20.png
Glimmer 3.0.2 Bioinformatics Zcluster Up20.png
GlimmerHMM 3.0.1 Bioinformatics Zcluster Up20.png
gmap 2007-09-28 Bioinformatics Zcluster Up20.png
gmap-gsnap 2012-07-20 Bioinformatics Zcluster Up20.png
GNU Compilers 4.1.2, 4.4.6, 4.5.3, 4.7.1 Compiler Zcluster Up20.png
gnuplot 4.0, 4.6.0 Graphics Zcluster Up20.png
gprof 2.17 Profiler Zcluster Up20.png
gpu-blast 1.1 with ncbi-blast-2.2.25+ Bioinformatics Zcluster Up20.png
grace 5.1.22 Graphics Zcluster Up20.png
Gromacs 4.5.5 Chemistry Zcluster Up20.png
GSL 1.9, 1.15 Math Library Zcluster Up20.png
gss Bioinformatics Zcluster Up20.png
Hapmix 2 Bioinformatics Zcluster Up20.png
HDF5 1.6.4, 1.8.9 Library Zcluster Up20.png
Hmmer 3.0 Bioinformatics Zcluster Up20.png
htseq 0.5.3p3 Bioinformatics Zcluster Up20.png
IBM XL C/C++ 7.0 Compiler Pcluster Up20.png
IBM XL Fortran 9.1 Compiler Pcluster Up20.png
igb 6.7.3 Bioinformatics Zcluster Up20.png
IGV 2.1.23 Bioinformatics Zcluster Up20.png
IMa May 06, 2009 Bioinformatics Pcluster Up20.png
indel-Seq-Gen 2.02 Bioinformatics Zcluster Up20.png
InStruct 3.2.09 Bioinformatics Zcluster Up20.png
Intel Compilers 2013 Compiler Zcluster Up20.png
iprscan (InterProScan) 5.0 CR2 Bioinformatics Zcluster Up20.png
iscan 1.0.0 Bioinformatics Zcluster Up20.png
JasPer 1.900.1 Other Zcluster Up20.png
Jellyfish 1.1.5 Bioinformatics Zcluster Up20.png
JModelTest 2.1.2 Bioinformatics Zcluster Up20.png
k-link 03 27, 2009 Bioinformatics Zcluster Up20.png
LAPACK 3.0, 3.4.2 Math Library Zcluster Up20.png
LASTZ 1.03.02 Bioinformatics Zcluster Up20.png
LDDist 1.3.2 Bioinformatics Zcluster Up20.png
libsequence 1.7.4 Bioinformatics Zcluster Up20.png
LLVM-Clang 3.1 Compiler Zcluster Up20.png
lsa 11182011 Bioinformatics Zcluster Up20.png
macs 1.4.2 Bioinformatics Zcluster Up20.png
mafft 6.864b Bioinformatics Zcluster Up20.png
maker 2.10 Bioinformatics Zcluster Up20.png
Maple 16 Other, Programming, Graphics Zcluster Up20.png
Maple-pcluster 10.06 Other, Programming, Graphics Pcluster Up20.png
MAQ 0.7.1 Bioinformatics Zcluster Up20.png
Mathematica 5.2 Other, Programming , Graphics Pcluster Up20.png
MatLab R2012a (7.14.0.739) Other, Programming, Graphics Zcluster Up20.png
MCL 12-135 Bioinformatics Zcluster Up20.png
MEAD 2.2.9 Chemistry Zcluster Up20.png
megan 4.67.2 Bioinformatics Zcluster Up20.png
MEME 4.8.1 Bioinformatics Zcluster Up20.png
Migrate 3.0.3 Bioinformatics Zcluster Up20.png
Minia 1.4683 Bioinformatics Zcluster Up20.png
MIRA 3.9.9 Bioinformatics Zcluster Up20.png
MKL 11.0 Math Library Zcluster Up20.png
MONO 3.0.3 Other, Programming Zcluster Up20.png
MOSAIK 2.1.73 Bioinformatics Zcluster Up20.png
MOTECC qmdcp 90 Chemistry Zcluster Up20.png
MOTECC qmdcp 90 Chemistry Pcluster Up20.png
MOTHUR 1.28.0 Bioinformatics Zcluster Up20.png
MP-EST 1.3 Programming Zcluster Up20.png
mpi4py 1.3 Programming Zcluster Up20.png
mpiblast 1.6.0 Bioinformatics Zcluster Up20.png
MrBayes 3.1.2 Bioinformatics Zcluster Up20.png
mrfast 2.5.0.4 Bioinformatics Zcluster Up20.png
MSA 3.8.1b Bioinformatics Zcluster Up20.png
MUSCLE 3.8.31 Bioinformatics Zcluster Up20.png
MyScanACE 04232012 Bioinformatics Zcluster Up20.png
NAMD 2.9 Chemistry Zcluster Up20.png
NAMD-pcluster 2.6b2, 2.7b1 Chemistry Pcluster Up20.png
NCBI Blast 2.2.26 Bioinformatics Zcluster Up20.png
NCBI Blast + 2.2.26 Bioinformatics Zcluster Up20.png
ncbi blast parsers Bioinformatics Zcluster Up20.png
NETCDF 3.6.3, 4.1.3 Library Zcluster Up20.png
NETCDF-pcluster 3.5.1, 3.6.2 Library Pcluster Up20.png
netlogo 5.0 Other Zcluster Up20.png
Newbler 2.6 Bioinformatics Zcluster Up20.png
Newick-utils 1.6 Bioinformatics Zcluster Up20.png
Ngsutils 0.5.0c Bioinformatics Zcluster Up20.png
NH PhyloBayes 0.2.3 Bioinformatics Zcluster Up20.png
nhPhyML 01/2012 Bioinformatics Zcluster Up20.png
NovelSeq 1.0.2 Bioinformatics Zcluster Up20.png
NovoAlign 2.07 Bioinformatics Zcluster Up20.png
NPUTE v1 Bioinformatics Zcluster Up20.png
numexp 1.4.2 Other Zcluster Up20.png
NWCHEM 4.7 Chemistry Pcluster Up20.png
Oases 0.2.02 Bioinformatics Zcluster Up20.png
opal 2.0.0 Bioinformatics Zcluster Up20.png
Open Babel 2.3.1 Chemistry Zcluster Up20.png
OpenBUGS 3.2.2 Statistics Zcluster Up20.png
OpenCL 1.0, 1.1 Programming Zcluster Up20.png
OpenCV 2.3.1 Other Zcluster Up20.png
OSPREY 2.0 Bioinformatics Zcluster Up20.png
p4 r231 Bioinformatics Zcluster Up20.png
pagan 0.39 Bioinformatics Zcluster Up20.png
PAML 4.4 Bioinformatics Zcluster Up20.png
pandaseq 2.0 Bioinformatics Zcluster Up20.png
Papara_nt 2.1.2 Bioinformatics Zcluster Up20.png
ParseRNAseq 1.0 Bioinformatics Zcluster Up20.png
PASHA 1.0.6 Bioinformatics Zcluster Up20.png
PeakSplitter 1.0 Bioinformatics Zcluster Up20.png
Perl 5.14.1 Programming Zcluster Up20.png
Pfam_scan 04282012 Bioinformatics Zcluster Up20.png
pftools 2.3.5 Bioinformatics Zcluster Up20.png
PGDBG 12.10 Debugger Zcluster Up20.png
PGI Compilers 2010, 2011, 2012 Compiler Zcluster Up20.png
PGPROF 12.10 Profiler Zcluster Up20.png
phred/phrap/conced Bioinformatics Zcluster Up20.png
Phyldog Bioinformatics Zcluster Up20.png
PhyloBayes 3.3b Bioinformatics Zcluster Up20.png
PhyloBayes-MPI 1.3b Bioinformatics Zcluster Up20.png
Phylip 3.69 Bioinformatics Zcluster Up20.png
PHYML 20110919 Bioinformatics Zcluster Up20.png
picard 1.62 Bioinformatics Zcluster Up20.png
pileup 0.6 Bioinformatics Zcluster Up20.png
pindel 0.2.4t Bioinformatics Zcluster Up20.png
prank 100802 Bioinformatics Zcluster Up20.png
Primer3 2.3.4 Bioinformatics Zcluster Up20.png
pysam 0.6 Bioinformatics Zcluster Up20.png
PyTables 2.3.1 Other Zcluster Up20.png
Python 2.4.3, 2.7.2, 3.3.0 Programming Zcluster Up20.png
Qiime 1.6.0 Bioinformatics Zcluster Up20.png
QTL Cartographer 1.17j Bioinformatics Zcluster Up20.png
quake 0.3.4 Bioinformatics Zcluster Up20.png
Quantum Espresso 4.3.2, 5.0.2 Chemistry Zcluster Up20.png
R 2.14.0, 2.15.0, 2.15.2 Statistics Zcluster Up20.png
R-pcluster 1.9.1, 2.1.1 Statistics Pcluster Up20.png
RAxML 04/26/2012 Bioinformatics Zcluster Up20.png
RAxML-Light 1.0.5 Bioinformatics Zcluster Up20.png
RCCBatchBlast 5.0 Bioinformatics Zcluster Up20.png
RCCBatchBlastPlus 1.0 Bioinformatics Zcluster Up20.png
RECON 1.05 Bioinformatics Zcluster Up20.png
Repeatmasker 3.3 Bioinformatics Zcluster Up20.png
Reptile 1.1 Bioinformatics Zcluster Up20.png
RepeatScout 1.05 Bioinformatics Zcluster Up20.png
riboPicker 0.4.3 Bioinformatics Zcluster Up20.png
RIP 4 Other Zcluster Up20.png
RMBlast 2.2.27 Bioinformatics Zcluster Up20.png
Rmpi 0.5-9, 0.6-1 Programming Zcluster Up20.png
RNAz 2.1 Bioinformatics Zcluster Up20.png
rnnotator 2.4.12 Bioinformatics Zcluster Up20.png
Roche 2.6 Bioinformatics Zcluster Up20.png
RSAT (RSA-tools) 1.0 Bioinformatics Zcluster Up20.png
RSEM 1.2.3 Bioinformatics Zcluster Up20.png
RUM 1.11 Bioinformatics Zcluster Up20.png
samtools 0.1.18 Bioinformatics Zcluster Up20.png
SAS 9.1 Statistics SAS Server Up20.png
SATé 2.2.4 Bioinformatics Zcluster Up20.png
SEQuel 1.0.2 Bioinformatics Zcluster Up20.png
SHE-RA 012012 Bioinformatics Zcluster Up20.png
SHORE 0.8 Bioinformatics Zcluster Up20.png
sickle 1.200 Bioinformatics Zcluster Up20.png
SiZer 07022012 Bioinformatics Zcluster Up20.png
slclust 04282012 Bioinformatics Zcluster Up20.png
SNAP 2010-7-28 Bioinformatics Zcluster Up20.png
snow 0.3-8, 0.3-10 Statistics Zcluster Up20.png
snowhite 1.1.4 Bioinformatics Zcluster Up20.png
snpEff 2_0_5d Bioinformatics Zcluster Up20.png
SOAPdenovo 1.05 Bioinformatics Zcluster Up20.png
SOAPdenovo-trans 1.01 Bioinformatics Zcluster Up20.png
SOAPdenovo2 r223 Bioinformatics Zcluster Up20.png
SomaticCall 42811 Bioinformatics Zcluster Up20.png
spimap 1.1 Bioinformatics Zcluster Up20.png
SpliceGrapher 0.2.1 Bioinformatics Zcluster Up20.png
SSAHA2 2.5.5 Bioinformatics Zcluster Up20.png
SSAKE v3-8 Bioinformatics Zcluster Up20.png
SSPACE 2.0 Bioinformatics Zcluster Up20.png
stacks 0.99994 Bioinformatics Zcluster Up20.png
STEM 2.0 Bioinformatics Zcluster Up20.png
strauto 0.3.1 Bioinformatics Zcluster Up20.png
structure 2.3.3 Bioinformatics Zcluster Up20.png
SVDetect r0.7m Bioinformatics Zcluster Up20.png
SWIG 2.0.5 Programming Zcluster Up20.png
T-Coffee 9.03.r1318 Bioinformatics Zcluster Up20.png
tabix 0.2.5 Bioinformatics Zcluster Up20.png
tagdust 1.12 Bioinformatics Zcluster Up20.png
tassel 4.0 Bioinformatics Zcluster Up20.png
tgicl 2.1 Bioinformatics Zcluster Up20.png
TIGER 1.02 Bioinformatics Zcluster Up20.png
tophat 2.0.5 Bioinformatics Zcluster Up20.png
Tracer v 1.5 Bioinformatics Zcluster Up20.png
Trinity r2013-02-25 Bioinformatics Zcluster Up20.png
UNAFold 3.8 Bioinformatics Zcluster Up20.png
UPP 2.0 Other Zcluster Up20.png
usearch v6.0.30 Bioinformatics Zcluster Up20.png
vcftools 0.1.10 Bioinformatics Zcluster Up20.png
velvet 1.2.01 Bioinformatics Zcluster Up20.png
VelvetOptimiser 2.2.4 Bioinformatics Zcluster Up20.png
ViennaRNA 1.8.5 Bioinformatics Zcluster Up20.png
virtualenv 1.8.1 Other Zcluster Up20.png
vmatch 2.1.6 Bioinformatics Zcluster Up20.png
VMD 1.9.1 Chemistry Zcluster Up20.png
wigToBigWig v 4 Bioinformatics Zcluster Up20.png
WISE2 2.2.0 Bioinformatics Zcluster Up20.png
WPS 3.4.1 Other Zcluster Up20.png
WRF 3.4.1 Other Zcluster Up20.png
WU Blast 2.2.6 Bioinformatics Zcluster Up20.png
yasra 2.3 Bioinformatics Zcluster Up20.png

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