Difference between revisions of "YH-T-Template"

Latest revision as of 13:59, 10 August 2018

Program On

Teaching

Version

2.0.6

Author / Distributor

Trinity

Description

"" More details are at Trinity

Running Program

The last version of this application is at trinity

To use this version, please load the module with

ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END -->

Here is an example of a shell script, sub.sh, to run on the batch queue:

#!/bin/bash
#SBATCH --job-name=j_trinity
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=10gb
#SBATCH --time=08:00:00
#SBATCH --output=trinity.%j.out
#SBATCH --error=trinity.%j.err

cd $SLURM_SUBMIT_DIR
ml

[options]

In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.

Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for more details of running jobs at Teaching cluster.

Here is an example of job submission command:

sbatch ./sub.sh

Documentation

ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> 
<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

Source code is obtained from Trinity

System

64-bit Linux

@@ Line 20: / Line 20: @@
 === Running Program ===
-Please refer to [[Running_Jobs_on_the_teaching_cluster]], [[Running_Jobs_on_the_teaching_cluster#Running_an_X-windows_application | Run X window Jobs]] and [[Running_Jobs_on_the_teaching_cluster#How_to_open_an_interactive_session | Run interactive Jobs]] for generic details about running jobs at Teaching.
 The last version of this application is at <!-- APP_PATH BEGIN -->trinity<!-- APP_PATH END -->
-To use this version, please first load the module with
+To use this version, please load the module with
 <pre class="gscript">
-ml <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options]
+ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END -->
 </pre>
+Here is an example of a shell script, sub.sh, to run on the batch queue:
-Here is an example of a shell script, sub.sh, to run on at the batch queue:
-<pre class="gscript">
-#!/bin/bash
-#SBATCH --job-name=j_<!-- NAME BEGIN -->trinity<!-- NAME END -->
-#SBATCH --partition=batch
-#SBATCH --mail-type=ALL
-#SBATCH --mail-user=username@uga.edu
-#SBATCH --ntasks=1
-#SBATCH --mem=10gb
-#SBATCH --time=08:00:00
-#SBATCH --output=<!-- NAME BEGIN -->trinity<!-- NAME END -->.%j.out
-cd $SLURM_SUBMIT_DIR
-ml <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options]
-</pre>
-where [options] need to be replaced by the options (command and arguments) you want to use.  Other parameters of the job, such as the maximum wall clock time, maximum memory, the number of nodes and cores per node, and the job name need to be modified appropriately as well.
 <div class="gscript2">
@@ Line 60: / Line 40: @@
 <nowiki>#</nowiki>SBATCH --time=<u>08:00:00</u><br>
 <nowiki>#</nowiki>SBATCH --output=<!-- NAME BEGIN -->trinity<!-- NAME END -->.%j.out<br>
+<nowiki>#</nowiki>SBATCH --error=<!-- NAME BEGIN -->trinity<!-- NAME END -->.%j.err<br>
 cd $SLURM_SUBMIT_DIR<br>
+ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --><br>
+<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <u>[options]</u><br>
+</div>
+In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.
+Please refer to [[Running_Jobs_on_the_teaching_cluster]], [[Running_Jobs_on_the_teaching_cluster#Running_an_X-windows_application | Run X window Jobs]] and [[Running_Jobs_on_the_teaching_cluster#How_to_open_an_interactive_session | Run interactive Jobs]] for more details of running jobs at Teaching cluster.
-ml <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <u>[options]</u><br>
-</div>
-In the real submission script, at least all the above underlined values need to be replaced by the proper values.
 Here is an example of job submission command:
@@ Line 75: / Line 59: @@
 <pre  class="gcommand">
-<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->
+ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END -->
+<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->
 </pre>
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