Difference between revisions of "YH-T-Template"
| Line 25: | Line 25: | ||
To use this version, please loads the module with | To use this version, please loads the module with | ||
<pre class="gscript"> | <pre class="gscript"> | ||
| − | ml <!-- | + | ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> |
</pre> | </pre> | ||
| Line 42: | Line 42: | ||
cd $SLURM_SUBMIT_DIR<br> | cd $SLURM_SUBMIT_DIR<br> | ||
| − | + | ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> | |
| − | + | <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> <u>[options]</u><br> | |
</div> | </div> | ||
| − | In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values | + | In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values. |
Please refer to [[Running_Jobs_on_the_teaching_cluster]], [[Running_Jobs_on_the_teaching_cluster#Running_an_X-windows_application | Run X window Jobs]] and [[Running_Jobs_on_the_teaching_cluster#How_to_open_an_interactive_session | Run interactive Jobs]] for more details of running jobs at Teaching cluster. | Please refer to [[Running_Jobs_on_the_teaching_cluster]], [[Running_Jobs_on_the_teaching_cluster#Running_an_X-windows_application | Run X window Jobs]] and [[Running_Jobs_on_the_teaching_cluster#How_to_open_an_interactive_session | Run interactive Jobs]] for more details of running jobs at Teaching cluster. | ||
| Line 58: | Line 58: | ||
<pre class="gcommand"> | <pre class="gcommand"> | ||
| + | ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> | ||
<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END --> | <!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END --> | ||
</pre> | </pre> | ||
Revision as of 11:05, 10 August 2018
Category
Bioinformatics
Program On
Teaching
Version
2.0.6
Author / Distributor
Trinity
Description
"" More details are at Trinity
Running Program
The last version of this application is at trinity
To use this version, please loads the module with
ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END -->
Here is an example of a shell script, sub.sh, to run on at the batch queue:
#!/bin/bash
#SBATCH --job-name=j_trinity
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=10gb
#SBATCH --time=08:00:00
#SBATCH --output=trinity.%j.out
cd $SLURM_SUBMIT_DIR
ml
[options]
In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.
Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for more details of running jobs at Teaching cluster.
Here is an example of job submission command:
sbatch ./sub.sh
Documentation
ml <!-- TEST_MODULE BEGIN --><!-- TEST_MODULE END --> <!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->
Installation
Source code is obtained from Trinity
System
64-bit Linux