YH-S2-Template

Category

Bioinformatics 

Program On

Sapelo2

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

Also refer to Running Jobs on Sapelo2 Also refer to Run X window Jobs and Run interactive Jobs

The last version is at /usr/local/apps/gb/trinity/2.0.6

Here is an example of a shell script sub.sh to run on at the batch queue:

#PBS -S /bin/bash
#PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END -->
#PBS -q batch
#PBS -l nodes=1:ppn=1:AMD
#PBS -l walltime=480:00:00
#PBS -l mem=10gb

cd $PBS_O_WORKDIR
<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options] 1>job.out 2>job.err   

Here is an example of job submission

qsub  ./sub.sh 

Documentation

<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

source code from Trinity

System

64-bit Linux