Software installed on Rocky 8: Difference between revisions

Latest revision as of 15:32, 4 August 2023

As part of our August 29-31,2023 maintenance window, the GACRC will be upgrading the Sapelo2 cluster operating system from CentOS 7 to Rocky 8.
Because this is a major OS update, we need to recompile all the applications and ensure that they work with the new version of OS.
Below is a list of the modules already installed on the Rocky 8 system. More software packages continue to be installed. If the software you need is not in this list yet, please feel free to let us know, if you would like us to install it centrally on the updated cluster.
All singularity containers available in /apps/singularity-images on the current Sapelo2 (CentOS 7) will continue to be available after the maintenance.
List of software already installed centrally on the Rocky 8 system (new Sapelo2, available after the maintenance)

  3-NA/201008-foss-2021b-Python-2.7.18
  ABySS/2.3.5-foss-2021b
  ACTC/1.1-GCCcore-11.2.0
  AMIXTURE/1.3.0
  AGAT/0.9.2-GCC-11.2.0
  AGAT/1.1.0                                          
  AMOS/3.1.0-foss-2021b
  ANTLR/2.7.7-GCCcore-11.2.0-Java-11
  ANTs/2.4.4-foss-2021b
  APR-util/1.6.1-GCCcore-11.2.0
  APR/1.7.0-GCCcore-11.2.0
  ART/2016.06.05-GCC-11.2.0
  ASE/3.22.1-foss-2021b
  ASTRAL/5.7.8-Java-1.8.0_241
  ATK/2.36.0-GCCcore-11.2.0
  ATK/2.38.0-GCCcore-11.3.0                           
  AUGUSTUS/3.4.0-foss-2021b
  AUGUSTUS/3.5.0-foss-2022a                           
  AlignGraph/2023-03-02-GCC-8.3.0
  AlphaFold/2.3.4-foss-2022a-CUA-11.7.0-ColabFold
  Amber/22.0-foss-2021b-AmberTools-22.3-CUA-11.4.1
  Anaconda3/2022.10
  Archive-Zip/1.68-GCCcore-11.2.0
  Armadillo/11.4.3-foss-2021b
  Armadillo/11.4.3-foss-2022a                         
  Arrow/8.0.0-foss-2021b
  Autoconf/2.69-GCCcore-8.3.0
  Autoconf/2.69-GCCcore-10.2.0
  Autoconf/2.71-GCCcore-11.2.0
  Autoconf/2.71-GCCcore-11.3.0
  Autoconf/2.71-GCCcore-12.2.0                        
  Automake/1.16.1-GCCcore-8.3.0
  Automake/1.16.2-GCCcore-10.2.0
  Automake/1.16.4-GCCcore-11.2.0
  Automake/1.16.5-GCCcore-11.3.0
  Automake/1.16.5-GCCcore-12.2.0                      
  Autotools/20180311-GCCcore-8.3.0
  Autotools/20200321-GCCcore-10.2.0
  Autotools/20210726-GCCcore-11.2.0
  Autotools/20220317-GCCcore-11.3.0
  Autotools/20220317-GCCcore-12.2.0                   
  BBMap/38.98-GCC-11.2.0
  BCFtools/1.14-GCC-11.2.0
  BCFtools/1.15.1-GCC-11.3.0                          
  BEOPS/2.4.41-foss-2021b
  BETools/2.30.0-GCC-11.2.0
  BLAST+/2.2.31
  BLAST+/2.12.0-gompi-2021b
  BLAST+/2.13.0-gompi-2021b
  BLAST+/2.13.0-gompi-2022a                           
  BLAST/2.2.26-Linux_x86_64
  BLAT/3.5-GCC-11.2.0
  BLAT/3.7-GCC-11.3.0                                 
  BLIS/0.8.1-GCC-11.2.0
  BLIS/0.9.0-GCC-11.3.0                               
  BRAKER/2.1.6-foss-2021b
  BRIG/0.95-gompi-2021b-Java-1.8.0_241
  BUSCO/5.4.3-foss-2021b
  BWA/0.7.17-GCCcore-11.2.0
  BamTools/2.5.2-GCC-11.2.0
  BamTools/2.5.2-GCC-11.3.0                           
  BamUtil/1.0.15-foss-2021b
  Bandage/0.9.0-GCCcore-11.2.0
  BayeScan/2.1-foss-2019b
  Bazel/3.7.2-GCCcore-11.2.0
  Bazel/4.2.2-GCCcore-11.2.0
  Bazel/5.1.1-GCCcore-11.3.0                          
  Beagle/5.4.22Jul22.46e-Java-11
  Beast/2.7.1-foss-2021b-CUA-11.4.1
  BigFT/1.9.1-foss-2021b
  Bio-B-HTS/3.01-GCC-11.2.0
  BioPerl/1.7.8-GCCcore-11.2.0
  BioPerl/1.7.8-GCCcore-11.3.0                        
  Biopython/1.79-foss-2021b
  Biopython/1.79-foss-2022a
  Biopython/1.81-foss-2021b                           
  Bismark/0.23.1-foss-2021b
  Bison/3.3.2-GCCcore-8.3.0
  Bison/3.3.2
  Bison/3.7.1-GCCcore-10.2.0
  Bison/3.7.6-GCCcore-11.2.0
  Bison/3.8.2-GCCcore-11.3.0
  Bison/3.8.2-GCCcore-12.2.0
  Bison/3.8.2                                         
  Blosc/1.21.3-GCCcore-11.2.0
  Boost.MPI/1.79.0-gompi-2022a
  Boost.Python/1.77.0-GCC-11.2.0
  Boost/1.75.0-GCC-11.2.0
  Boost/1.77.0-GCC-11.2.0
  Boost/1.79.0-GCC-11.3.0                             
  Bottleneck/1.3.7-foss-2022a
  Bowtie/1.3.1-GCC-11.2.0
  Bowtie/1.3.1-GCC-11.3.0                             
  Bowtie2/2.4.1-GCC-8.3.0
  Bowtie2/2.4.4-GCC-11.2.0
  Bowtie2/2.4.5-GCC-11.2.0
  Bowtie2/2.4.5-GCC-11.3.0                            
  Bracken/2.7-GCCcore-11.2.0
  Brotli/1.0.9-GCCcore-11.2.0
  Brotli/1.0.9-GCCcore-11.3.0                         
  C-HIT/4.8.1-GCC-11.2.0
  C-HIT/4.8.1-GCC-11.3.0                             
  CFITSIO/3.49-GCCcore-11.2.0
  CGAL/4.14.3-gompi-2021b
  CGmapTools/0.1.2-foss-2021b
  CMake/3.12.1
  CMake/3.21.1-GCCcore-11.2.0
  CMake/3.22.1-GCCcore-11.2.0
  CMake/3.23.1-GCCcore-11.3.0
  CMake/3.24.3-GCCcore-11.3.0                         
  CUA/11.3.1
  CUA/11.4.1
  CUA/11.7.0
  CUA/12.0.0                                         
  CapnProto/0.9.1-GCCcore-11.2.0
  CellRanger/7.0.0
  Centrifuge/1.0.4-gompi-2021b
  Cereal/1.3.0
  CheMPS2/1.8.11-foss-2021b
  Check/0.15.2-GCCcore-11.2.0
  CheckM/1.1.3-foss-2021b
  Chimera/1.16-linux_x86_64
  Circos/0.69-9-GCCcore-11.2.0
  Clang/13.0.1-GCCcore-11.2.0
  Clustal-Omega/1.2.4-GCC-11.2.0
  ClustalW2/2.1-GCC-11.2.0
  Consed/29.0-foss-2021b
  Consed/29.0-foss-2022a                              
  CoordgenLibs/3.0.1-gompi-2021b
  CppUnit/1.15.1-GCCcore-11.2.0
  Cufflinks/20190706-GCC-11.2.0
  Cython/0.27.3-GCCcore-11.3.0-Python-2.7.18
  Cytoscape/3.9.1-Java-11
  B/18.1.32-GCCcore-8.3.0
  B/18.1.40-GCCcore-10.2.0
  B/18.1.40-GCCcore-11.2.0
  B/18.1.40-GCCcore-11.3.0
  B/18.1.40-GCCcore-12.2.0                           
  B-mysql/4.050-GCC-11.2.0
  B_File/1.857-GCCcore-11.2.0
  B_File/1.858-GCCcore-11.3.0                        
  Bus/1.13.18-GCCcore-11.2.0
  Bus/1.14.0-GCCcore-11.3.0                          
  IAMON/2.0.13-GCC-11.2.0
  IAMON/2.0.15-GCC-11.2.0
  IAMON/2.1.0-GCC-11.3.0                            
  ataWarrior/5.5.0
  endroPy/4.5.2-GCCcore-11.2.0
  eve-Size/0.83-GCCcore-11.2.0-Perl-5.34.0
  ockQ/1.0-foss-2022a
  oxygen/1.9.1-GCCcore-11.2.0
  oxygen/1.9.4-GCCcore-11.3.0                        
  ELPA/2021.11.001-foss-2021b
  EMBOSS/6.6.0-foss-2021b
  ETE/3.1.2-foss-2021b
  EasyBuild/4.6.0
  Eigen/3.3.9-GCCcore-11.2.0
  Eigen/3.4.0-GCCcore-11.2.0
  Eigen/3.4.0-GCCcore-11.3.0                          
  EnTAP/0.10.8-beta-foss-2021b
  Exonerate/2.4.0-GCC-11.2.0
  Exonerate/2.4.0-GCC-11.3.0                          
  FASTX-Toolkit/0.0.14-GCC-11.2.0
  FFTW.MPI/3.3.10-gompi-2022a
  FFTW/3.3.8-gompi-2019b
  FFTW/3.3.10-GCC-11.3.0
  FFTW/3.3.10-gompi-2021b                             
  FFmpeg/4.3.2-GCCcore-11.2.0
  FLAC/1.3.3-GCCcore-11.2.0
  FLAC/1.3.4-GCCcore-11.3.0                           
  FLASH/2.2.00-GCC-11.2.0
  FLTK/1.3.7-GCCcore-11.2.0
  FSL/6.0.5.1-foss-2021b
  FTGL/2.4.0-GCCcore-11.3.0
  FastANI/1.33-GCC-11.2.0
  FastME/2.1.6.1-GCC-11.2.0
  FastQC/0.11.9-Java-11
  FastTree/2.1.11-GCCcore-11.2.0
  Flask/2.0.2-GCCcore-11.2.0
  Flask/2.2.2-GCCcore-11.3.0                          
  FlexiBLAS/3.0.4-GCC-11.2.0
  FlexiBLAS/3.2.0-GCC-11.3.0                          
  Flye/2.9.1-GCC-11.2.0
  FragGeneScan/1.31-GCCcore-11.2.0
  FreeImage/3.18.0-GCCcore-11.2.0
  FreeSurfer/7.4.1-foss-2021b
  FriBidi/1.0.10-GCCcore-11.2.0
  FriBidi/1.0.12-GCCcore-11.3.0                       
  GATK/4.3.0.0-GCCcore-11.2.0-Java-11
  GATK/4.3.0.0-GCCcore-11.2.0-Java-13.0.2
  GATK/4.3.0.0-GCCcore-11.3.0-Java-11                 
  GCC/8.3.0
  GCC/10.2.0
  GCC/11.2.0
  GCC/11.3.0
  GCC/12.2.0                                          
  GCCcore/8.3.0
  GCCcore/10.2.0
  GCCcore/11.2.0
  GCCcore/11.3.0
  GCCcore/12.2.0                                      
  G/2.75-GCCcore-11.2.0
  GAL/3.3.2-foss-2021b
  GAL/3.5.0-foss-2022a                               
  GRCopy/2.3-GCCcore-11.2.0
  GRCopy/2.3-GCCcore-11.3.0                          
  GEM/1.5.1-foss-2022a
  GEOS/3.9.1-GCC-11.2.0
  GEOS/3.10.3-GCC-11.3.0                              
  GLPK/5.0-GCCcore-11.2.0
  GLPK/5.0-GCCcore-11.3.0                             
  GLib/2.69.1-GCCcore-11.2.0
  GLib/2.72.1-GCCcore-11.3.0                          
  GLibmm/2.66.4-GCCcore-11.2.0
  GMAP-GSNAP/2021-21-17-GCC-11.2.0
  GMAP-GSNAP/2023-02-17-GCC-11.3.0                    
  GMP/6.1.2-GCCcore-8.3.0
  GMP/6.2.1-GCCcore-11.2.0
  GMP/6.2.1-GCCcore-11.3.0                            
  GObject-Introspection/1.68.0-GCCcore-11.2.0
  GObject-Introspection/1.72.0-GCCcore-11.3.0         
  GROMACS/2021.5-foss-2021b-CUA-11.4.1-PLUME-2.8.0
  GSL/2.7-GCC-11.2.0
  GSL/2.7-GCC-11.3.0                                  
  GST-plugins-base/1.18.5-GCC-11.2.0
  GStreamer/1.18.5-GCC-11.2.0
  GTK+/3.24.23-GCCcore-11.3.0
  GTK2/2.24.33-GCCcore-11.3.0
  GTK3/3.24.31-GCCcore-11.2.0
  GTS/0.7.6-GCCcore-11.2.0
  Gdk-Pixbuf/2.42.6-GCCcore-11.2.0
  Gdk-Pixbuf/2.42.8-GCCcore-11.3.0                    
  GeneMark-ET/4.71-GCCcore-11.2.0
  GeneMark-ET/4.71-GCCcore-11.3.0                     
  GeneMarkS-T/5.1-GCCcore-11.2.0
  Genome/05012020-foss-2021b
  Genome/05012020-foss-2022a                          
  GenomeThreader/1.7.3-Linux_x86_64-64bit
  GenomeTools/1.6.2-GCC-11.2.0
  GffCompare/0.12.6-GCC-11.2.0
  Ghostscript/9.54.0-GCCcore-11.2.0
  Ghostscript/9.56.1-GCCcore-11.3.0                   
  GitPython/3.1.24-GCCcore-11.2.0
  GlimmerHMM/3.0.4c-GCC-11.2.0
  Globus-CLI/3.6.0-GCCcore-11.2.0
  Go/1.17.6
  Grace/5.1.25-foss-2021b
  Graphviz/2.50.0-GCCcore-11.2.0
  Guile/1.8.8-GCCcore-8.3.0
  Guile/3.0.7-GCCcore-11.2.0                          
  HF/4.2.15-GCCcore-11.2.0
  HF/4.2.15-GCCcore-11.3.0                           
  HF5/1.10.8-gompi-2021b
  HF5/1.10.8-gompi-2022a
  HF5/1.12.1-gompi-2021b
  HF5/1.12.2-gompi-2022a                             
  HEC-RAS/6.10
  HH-suite/3.3.0-gompi-2021b
  HH-suite/3.3.0-gompi-2022a                          
  HISAT2/2.2.1-gompi-2021b
  HISAT2/2.2.1-gompi-2022a                            
  HMMER/3.3.2-gompi-2021b
  HMMER/3.3.2-gompi-2022a                             
  HPL/2.3-foss-2021b
  HTSeq/2.0.2-foss-2021b
  HTSlib/1.9-GCC-11.2.0
  HTSlib/1.14-GCC-11.2.0
  HTSlib/1.15.1-GCC-11.3.0                            
  HarfBuzz/2.8.2-GCCcore-11.2.0
  HarfBuzz/4.2.1-GCCcore-11.3.0                       
  Homer/4.11-foss-2021b
  HyPhy/2.5.33-gompi-2021b
  HybPiper/2.1.6-conda
  ICU/69.1-GCCcore-11.2.0
  ICU/71.1-GCCcore-11.3.0                             
  IBA-U/1.1.3-GCC-11.2.0
  IGV/2.16.1-Java-11
  IPython/7.26.0-GCCcore-11.2.0
  IQ-TREE/2.2.1-gompi-2021b
  ISA-L/2.30.0-GCCcore-11.2.0
  ImageMagick/7.1.0-4-GCCcore-11.2.0
  ImageMagick/7.1.0-37-GCCcore-11.3.0                 
  Infernal/1.1.4-foss-2021b
  Infernal/1.1.4-foss-2022a                           
  InterProScan/5.62-94.0-foss-2021b
  JAGS/4.3.0-foss-2021b
  JUnit/4.12-Java-1.8.0_241
  JasPer/2.0.33-GCCcore-11.2.0
  JasPer/2.0.33-GCCcore-11.3.0                        
  Java/1.7.0_80
  Java/1.8.0_241
  Java/11.0.16                                        
  Java/13.0.2                                        
  Java/15.0.1                                        
  Java/17.0.6                                        
  Jellyfish/2.3.0-GCC-11.2.0
  Jellyfish/2.3.0-GCC-11.3.0                          
  JsonCpp/1.9.4-GCCcore-11.2.0
  JsonCpp/1.9.5-GCCcore-11.3.0                        
  Judy/1.0.5-GCCcore-11.2.0
  Judy/1.0.5-GCCcore-11.3.0                           
  Julia/1.8.2-linux-x86_64
  Kalign/3.3.2-GCCcore-11.2.0
  Kalign/3.3.5-GCCcore-11.3.0                         
  Kent_tools/422-GCC-11.2.0
  KerasTuner/1.3.5-foss-2022a
  KronaTools/2.8.1-GCCcore-11.2.0
  LAME/3.100-GCCcore-11.2.0
  LAME/3.100-GCCcore-11.3.0                           
  LAMMPS/23Jun2022-foss-2021b-kokkos
  LAPACK/3.10.1-GCC-11.2.0
  LASTZ/1.04.15-foss-2021b
  LLVM/12.0.1-GCCcore-11.2.0
  LLVM/14.0.3-GCCcore-11.3.0                          
  LMB/0.9.29-GCCcore-11.2.0
  LMB/0.9.29-GCCcore-11.3.0                          
  LS2/2.3-GCCcore-11.2.0
  LTR_retriever/2.9.0-foss-2021b-RepeatMasker-4.1.4
  LTR_retriever/2.9.0-foss-2021b                      
  LZO/2.10-GCCcore-11.2.0
  LZO/2.10-GCCcore-11.3.0                             
  LibTIFF/4.3.0-GCCcore-11.2.0
  LibTIFF/4.3.0-GCCcore-11.3.0                        
  LightGBM/3.3.5-foss-2021b-CUA-11.4.1
  LightGBM/3.3.5-foss-2021b                           
  LittleCMS/2.12-GCCcore-11.2.0
  LittleCMS/2.13.1-GCCcore-11.3.0                     
  LoFreq/2.1.3.1-foss-2021b-Python-2.7.18
  Lua/5.4.3-GCCcore-11.2.0
  M4/1.4.18-GCCcore-8.3.0
  M4/1.4.18-GCCcore-10.2.0
  M4/1.4.18
  M4/1.4.19-GCCcore-11.2.0
  M4/1.4.19-GCCcore-11.3.0
  M4/1.4.19-GCCcore-12.2.0
  M4/1.4.19                                           
  MACS2/2.2.7.1-foss-2021b
  MAFFT/7.490-GCC-11.2.0-with-extensions
  MAFFT/7.490-gompi-2021b-with-extensions             
  MAKER/3.01.04-foss-2022a
  MCL/14.137-GCCcore-11.2.0
  MEGAN/6.24.23-Java-17
  MEME/5.4.1-gompi-2021b
  MEME/5.5.0-gompi-2021b                              
  METIS/5.1.0-GCCcore-11.2.0
  METIS/5.1.0-GCCcore-11.3.0                          
  MMseqs2/13-45111-gompi-2021b
  MMseqs2/14-7e284-gompi-2021b
  MMseqs2/14-7e284-gompi-2022a                        
  MPACK/3.0.0-foss-2021b
  MPFR/4.1.0-GCCcore-11.2.0
  MPFR/4.1.0-GCCcore-11.3.0                           
  MUMmer/4.0.0beta2-GCCcore-11.2.0
  MUMmer/4.0.0rc1-GCCcore-11.2.0                      
  MUSCLE/3.8.31-GCCcore-11.2.0
  Make-Lastz-Chains/0.9.1
  Mako/1.1.4-GCCcore-11.2.0
  Mako/1.2.0-GCCcore-11.3.0                           
  MariaB-connector-c/3.2.2-GCCcore-11.2.0
  MariaB/10.6.4-GCC-11.2.0
  MariaB/10.9.3-GCC-11.3.0                           
  Mash/2.3-GCC-11.2.0
  Medusa/1.6-foss-2021b-Python-3.9.6-Java-1.8.0_241
  Mesa/21.1.7-GCCcore-11.2.0
  Mesa/22.0.3-GCCcore-11.3.0                          
  Meson/0.55.3-GCCcore-11.2.0
  Meson/0.58.2-GCCcore-11.2.0
  Meson/0.62.1-GCCcore-11.3.0                         
  MetaEuk/6-GCC-11.2.0
  MinCE/0.4.2-GCCcore-8.3.0-Java-11
  Miniconda3/4.12.0
  Miniconda3/22.11.1-1                                
  Mirage/2.0.0-GCCcore-11.2.0
  MuTect/1.1.7-Java-1.7.0_80
  MultiQC/1.12-foss-2021b
  MySQL/8.0.34-glibc2.28
  NASM/2.15.05-GCCcore-11.2.0
  NASM/2.15.05-GCCcore-11.3.0                         
  NCCL/2.10.3-GCCcore-11.2.0-CUA-11.4.1
  NCCL/2.12.12-GCCcore-11.3.0-CUA-11.7.0             
  NGS/2.10.9-GCCcore-11.2.0
  NGS/2.11.2-GCCcore-11.2.0                           
  NLopt/2.7.0-GCCcore-11.2.0
  NLopt/2.7.1-GCCcore-11.3.0                          
  NSPR/4.32-GCCcore-11.2.0
  NSS/3.69-GCCcore-11.2.0
  NVHPC/22.11-CUA-11.7.0
  NVHPC/23.1-CUA-12.0.0                              
  Nextflow/22.10.6
  Ninja/1.10.2-GCCcore-11.2.0
  Ninja/1.10.2-GCCcore-11.3.0                         
  ORCA/5.0.3-gompi-2021b
  OpenBLAS/0.3.7-GCC-8.3.0
  OpenBLAS/0.3.18-GCC-11.2.0
  OpenBLAS/0.3.20-GCC-11.3.0                          
  OpenBabel/3.1.1-gompi-2021b
  OpenCV/4.5.5-foss-2021b-contrib
  OpenEXR/3.1.1-GCCcore-11.2.0
  OpenJPEG/2.4.0-GCCcore-11.2.0
  OpenJPEG/2.5.0-GCCcore-11.3.0                       
  OpenMM/7.5.1-foss-2021b-eepMind-patch
  OpenMM/8.0.0-foss-2022a-CUA-11.7.0                 
  OpenMPI/4.1.2-GCC-11.2.0-pmi2
  OpenMPI/4.1.2-GCC-11.2.0
  OpenMPI/4.1.4-GCC-11.3.0
  OpenMPI/4.1.4-GCC-12.2.0                            
  OpenPGM/5.2.122-GCCcore-11.2.0
  OpenSSL/1.1
  OrthoFinder/2.5.4-foss-2021b
  PAML/4.9j-GCCcore-11.2.0
  PCRE/8.45-GCCcore-11.2.0
  PCRE/8.45-GCCcore-11.3.0                            
  PCRE2/10.37-GCCcore-11.2.0
  PCRE2/10.40-GCCcore-11.3.0                          
  PLINK/2.00a4-GCC-11.2.0
  PLUME/2.7.3-foss-2021b
  PLUME/2.8.0-foss-2021b                             
  PMIx/3.1.5-GCCcore-10.2.0
  PMIx/4.1.0-GCCcore-11.2.0
  PMIx/4.1.2-GCCcore-11.3.0
  PMIx/4.2.2-GCCcore-12.2.0                           
  PROJ/8.1.0-GCCcore-11.2.0
  PROJ/9.0.0-GCCcore-11.3.0                           
  PSI4/1.7-foss-2021b
  PTarPmiR/0.1-foss-2021b-Python-3.9.6
  Pango/1.48.8-GCCcore-11.2.0
  Pango/1.50.7-GCCcore-11.3.0                         
  Perl/5.30.0-GCCcore-8.3.0-minimal
  Perl/5.30.0-GCCcore-8.3.0
  Perl/5.32.0-GCCcore-10.2.0-minimal
  Perl/5.32.0-GCCcore-10.2.0
  Perl/5.34.0-GCCcore-11.2.0-minimal
  Perl/5.34.0-GCCcore-11.2.0
  Perl/5.34.1-GCCcore-11.3.0-minimal
  Perl/5.34.1-GCCcore-11.3.0
  Perl/5.36.0-GCCcore-12.2.0                          
  Phobius/1.01-GCCcore-11.2.0-Perl-5.34.0
  Phrap/0.990329-foss-2021b
  Phrap/0.990329-foss-2022a                           
  Phred/0.071220.c-foss-2021b
  Phred/0.071220.c-foss-2022a                         
  Pillow-SIM/8.3.2-GCCcore-11.2.0
  Pillow/8.3.2-GCCcore-11.2.0
  Pillow/9.1.1-GCCcore-11.3.0                         
  Pilon/1.23-Java-11
  PnetCF/1.12.3-gompi-2021b
  PyBioLib/1.1.988-GCCcore-11.3.0
  PyQt5/5.15.4-GCCcore-11.2.0
  PyRosetta/4.release-339-GCCcore-11.2.0-Python-3.9.6
  PyTorch-Lightning/1.5.9-foss-2021b-CUA-11.4.1
  PyTorch/1.12.1-foss-2021b-CUA-11.4.1
  PyYAML/5.4.1-GCCcore-11.2.0
  PyYAML/6.0-GCCcore-11.2.0
  PyYAML/6.0-GCCcore-11.3.0                           
  Pysam/0.17.0-GCC-11.2.0
  Python/2.7.18-GCCcore-11.2.0-bare
  Python/2.7.18-GCCcore-11.2.0
  Python/2.7.18-GCCcore-11.3.0
  Python/3.7.4-GCCcore-8.3.0
  Python/3.9.6-GCCcore-11.2.0-bare
  Python/3.9.6-GCCcore-11.2.0
  Python/3.10.4-GCCcore-11.3.0-bare
  Python/3.10.4-GCCcore-11.3.0                        
  QIIME2/2023.2
  QUAST/5.0.2-foss-2021b
  Qhull/2020.2-GCCcore-11.2.0
  Qhull/2020.2-GCCcore-11.3.0                         
  Qt5/5.15.2-GCCcore-11.2.0
  QuantumESPRESSO/7.1-foss-2021b
  Qwt/6.2.0-GCCcore-11.2.0
  R/4.1.2-foss-2021b
  R/4.2.1-foss-2021b
  R/4.2.1-foss-2022a
  R/4.3.1-foss-2022a                                  
  RAxML/8.2.12-gompi-2021b-hybrid-avx2
  RKit/2022.03.5-foss-2021b
  RE2/2022-02-01-GCCcore-11.2.0
  RE2/2022-06-01-GCCcore-11.3.0                       
  RECON/1.08-GCC-11.2.0
  RMBlast/2.11.0-gompi-2021b
  RMBlast/2.13.0-gompi-2021b
  RMBlast/2.13.0-gompi-2022a                          
  RSEM/1.3.3-foss-2021b
  RSEM/1.3.3-foss-2022a                               
  Racon/1.5.0-GCCcore-11.2.0
  RapidJSON/1.1.0-GCCcore-11.2.0
  RapidJSON/1.1.0-GCCcore-11.3.0                      
  RepeatMasker/4.1.2-p1-foss-2021b
  RepeatMasker/4.1.4-foss-2021b
  RepeatMasker/4.1.4-foss-2022a                       
  RepeatModeler/2.0.2a-foss-2021b
  RepeatModeler/2.0.3-foss-2021b
  RepeatModeler/2.0.4-foss-2021b                      
  RepeatProfiler/1.1-foss-2021b
  RepeatScout/1.0.6-GCC-11.2.0
  Rosetta/2022.46.334-intel-2021b
  Ruby/3.0.5-GCCcore-11.2.0
  Rust/1.54.0-GCCcore-11.2.0
  Rust/1.60.0-GCCcore-11.3.0
  Rust/1.70.0-GCCcore-11.3.0                          
  SAMtools/0.1.20-GCC-11.2.0
  SAMtools/1.6-GCC-11.2.0
  SAMtools/1.14-GCC-11.2.0
  SAMtools/1.16.1-GCC-11.3.0                          
  SCons/4.2.0-GCCcore-11.2.0
  SEPP/4.5.1-foss-2021b
  SLATEC/4.1-GCC-11.2.0
  SMRT-Link/12.0.0.177059-cli-tools-only
  SNAP-HMM/20190603-GCC-11.2.0
  SNAP-HMM/20221022-GCC-11.3.0                        
  SNAP/2.0.1-GCC-11.2.0
  SNPGenie/1.0-foss-2021b-Perl-5.34.0
  SPAdes/3.15.3-GCC-11.2.0
  SPAdes/3.15.5-GCC-11.2.0-kmer300
  SPAdes/3.15.5-GCC-11.2.0                            
  SQANTI3/5.1.1
  SQLAlchemy/1.4.42-foss-2021b-Python-3.9.6
  SQLite/3.29.0-GCCcore-8.3.0
  SQLite/3.36-GCCcore-11.2.0
  SQLite/3.38.3-GCCcore-11.3.0                        
  SRA-Toolkit/3.0.1-centos_linux64
  SRA-Toolkit/3.0.3-gompi-2022a                       
  SSW/1.1-GCCcore-11.2.0
  STAR/2.7.10b-GCC-11.2.0
  STAR/2.7.10b-GCC-11.3.0                             
  SWIG/4.0.2-GCCcore-11.2.0
  SWIG/4.0.2-GCCcore-11.3.0                           
  Salmon/0.8.2
  Salmon/1.9.0-GCC-11.2.0
  Salmon/1.9.0-GCC-11.3.0                             
  ScaFaCoS/1.0.1-foss-2021b
  ScaLAPACK/2.0.2-gompi-2019b
  ScaLAPACK/2.1.0-gompi-2021b-fb
  ScaLAPACK/2.2.0-gompi-2022a-fb                      
  SciPy-bundle/2021.10-foss-2021b-Python-2.7.18
  SciPy-bundle/2021.10-foss-2021b
  SciPy-bundle/2021.10-foss-2022a-Python-2.7.18
  SciPy-bundle/2022.05-foss-2021b
  SciPy-bundle/2022.05-foss-2022a                     
  SeqKit/0.16.1
  SeqKit/2.3.1                                        
  SeqLib/1.2.0-GCC-11.2.0
  Serf/1.3.9-GCCcore-11.2.0
  Shapely/1.8.2-foss-2021b
  ShortStack/4.0.1-foss-2021b-Perl-5.34.0
  SignalP/4.1f-GCCcore-11.2.0
  SignalP/5.0b-Linux
  SignalP/6.0g-GCCcore-11.2.0-slow-sequential         
  Stacks/2.62-foss-2021b
  StringTie/2.2.1-GCC-11.2.0
  Structure/2.3.4-GCC-11.2.0
  Subread/2.0.3-GCC-11.2.0
  Subversion/1.14.1-GCCcore-11.2.0
  SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0
  SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0           
  Szip/2.1.1-GCCcore-11.2.0
  Szip/2.1.1-GCCcore-11.3.0                           
  TASSEL/5.2.44-Java-1.8.0_241
  TMHMM/2.0c-GCCcore-11.2.0-Perl-5.34.0
  TRF/4.09.1-GCCcore-11.2.0
  TRF/4.09.1-GCCcore-11.3.0                           
  TWL-NINJA/0.97-cluster_only-GCC-11.2.0
  TWL-NINJA/0.98-cluster_only-GCC-11.2.0              
  Tcl/8.6.9-GCCcore-8.3.0
  Tcl/8.6.11-GCCcore-11.2.0
  Tcl/8.6.12-GCCcore-11.3.0                           
  TensorFlow/2.7.1-foss-2021b-CUA-11.4.1
  TensorFlow/2.11.0-foss-2022a-CUA-11.7.0
  TensorFlow/2.11.0-foss-2022a                        
  Theano/1.1.2-foss-2021b-PyMC
  Tk/8.6.11-GCCcore-11.2.0
  Tk/8.6.12-GCCcore-11.3.0                            
  Tkinter/2.7.18-GCCcore-11.2.0
  Tkinter/2.7.18-GCCcore-11.3.0
  Tkinter/3.9.6-GCCcore-11.2.0
  Tkinter/3.10.4-GCCcore-11.3.0                       
  Transecoder/5.5.0-GCC-11.3.0
  Transecoder/5.7.0-GCC-11.3.0                       
  Transrate/1.0.3
  TreeMix/1.13-GCC-11.2.0
  Trim_Galore/0.6.7-GCCcore-11.2.0
  Trimmomatic/0.39-Java-13
  Trinity/2.15.1-foss-2021b
  Trinity/2.15.1-foss-2022a                           
  Trinotate/4.0.1-foss-2022a
  UCC/1.0.0-GCCcore-11.3.0
  UCC/1.1.0-GCCcore-12.2.0                            
  UCLUST/1.2.22q-i86linux64
  UCX-CUA/1.11.2-GCCcore-11.2.0-CUA-11.4.1
  UCX-CUA/1.12.1-GCCcore-11.3.0-CUA-11.7.0          
  UCX/1.9.0-GCCcore-10.2.0
  UCX/1.11.2-GCCcore-11.2.0
  UCX/1.12.1-GCCcore-11.3.0
  UCX/1.13.1-GCCcore-12.2.0                           
  UUNITS/2.2.28-GCCcore-11.2.0
  UUNITS/2.2.28-GCCcore-11.3.0                       
  UMI-tools/1.1.2-foss-2021b-Python-3.9.6
  USEARCH/11.0.667-i86linux32
  UnZip/6.0-GCCcore-11.2.0
  UnZip/6.0-GCCcore-11.3.0                            
  Unicycler/0.5.0-gompi-2021b-Python-3.9.6
  Unicycler/0.5.0-gompi-2021b                         
  VCFtools/0.1.16-GCC-11.2.0
  VEP/105-GCC-11.2.0
  VSEARCH/2.22.1-GCC-11.2.0
  VTK/9.1.0-foss-2021b
  Velvet/1.2.10-GCC-11.2.0-mt-kmer_191
  ViennaRNA/2.5.1-foss-2021b
  Voro++/0.4.6-GCCcore-11.2.0
  WEKA/3.8.6-Java-1.8.0_241
  WPS/4.4-foss-2021b-dmpar
  WRF-Chem-KPP/4.4.2-foss-2021b-dmpar
  WRF-Chem/4.4.2-foss-2021b-dmpar
  WRF/4.3-foss-2021b-dmpar
  WRF/4.4.2-foss-2021b-dmpar                          
  WU-Blast/2.2.6-GCC-11.2.0
  WU-Blast/2.2.6-GCC-11.3.0                           
  X11/20210802-GCCcore-11.2.0
  X11/20220504-GCCcore-11.3.0                         
  XML-Compile/1.63-GCCcore-11.2.0
  XML-LibXML/2.0207-GCCcore-11.2.0
  XML-LibXML/2.0207-GCCcore-11.3.0                    
  XZ/5.2.4-GCCcore-8.3.0
  XZ/5.2.5-GCCcore-10.2.0
  XZ/5.2.5-GCCcore-11.2.0
  XZ/5.2.5-GCCcore-11.3.0
  XZ/5.2.7-GCCcore-12.2.0                             
  XlsxWriter/3.0.8-GCCcore-11.3.0
  Xvfb/1.20.13-GCCcore-11.2.0
  Xvfb/21.1.3-GCCcore-11.3.0                          
  Yasm/1.3.0-GCCcore-11.2.0
  Z3/4.8.12-GCCcore-11.2.0
  ZeroMQ/4.3.4-GCCcore-11.2.0
  Zip/3.0-GCCcore-11.2.0
  Zip/3.0-GCCcore-11.3.0                              
  angsd/0.940-GCC-11.2.0
  annovar/20200607-GCCcore-11.2.0-Perl-5.34.0
  ant/1.10.1-Java-1.8.0_241
  ant/1.10.11-Java-11
  ant/1.10.12-Java-11                                 
  archspec/0.1.3-GCCcore-11.2.0
  argtable/2.13-GCCcore-11.2.0
  aria2/1.36.0-GCCcore-11.2.0
  arpack-ng/3.8.0-foss-2021b
  arpack-ng/3.8.0-foss-2022a                          
  at-spi2-atk/2.38.0-GCCcore-11.2.0
  at-spi2-atk/2.38.0-GCCcore-11.3.0                   
  at-spi2-core/2.40.3-GCCcore-11.2.0
  at-spi2-core/2.44.1-GCCcore-11.3.0                  
  attr/2.5.1-GCCcore-11.2.0
  bam-readcount/0.8.0-GCC-11.2.0
  barrnap/0.9-gompi-2021b
  bcbio-gff/0.7.0-foss-2021b
  bcl2fastq2/2.20.0-GCC-11.2.0
  beagle-lib/4.0.0-foss-2021b-CUA-11.4.1
  binutils/2.32-GCCcore-8.3.0
  binutils/2.32
  binutils/2.35-GCCcore-10.2.0
  binutils/2.35
  binutils/2.37-GCCcore-11.2.0
  binutils/2.37
  binutils/2.38-GCCcore-11.3.0
  binutils/2.38
  binutils/2.39-GCCcore-12.2.0
  binutils/2.39                                       
  bioawk/1.0-GCC-11.2.0
  biom-format/2.1.14-foss-2021b
  bokeh/2.4.2-foss-2021b
  bokeh/2.4.3-foss-2021b                              
  boto3/1.20.13-GCCcore-11.2.0
  breseq/0.38.1-foss-2021b
  bwa-meth/0.2.6-GCC-11.2.0
  bx-python/0.8.13-foss-2021b
  bzip2/1.0.8-GCCcore-8.3.0
  bzip2/1.0.8-GCCcore-11.2.0
  bzip2/1.0.8-GCCcore-11.3.0                          
  c-ares/1.18.1-GCCcore-11.2.0
  cURL/7.78.0-GCCcore-11.2.0
  cURL/7.83.0-GCCcore-11.3.0                          
  cairo/1.16.0-GCCcore-11.2.0
  cairo/1.17.4-GCCcore-11.3.0                         
  canu/2.2-GCCcore-11.2.0
  ccache/4.6.3-GCCcore-11.2.0
  cfour/2.1-intel-2021b-mpi
  cfour/2.1-intel-2021b-serial                        
  cppy/1.1.0-GCCcore-11.2.0
  cppy/1.2.1-GCCcore-11.3.0                           
  cuNN/8.2.1.32-CUA-11.3.1
  cuNN/8.2.2.26-CUA-11.4.1
  cuNN/8.4.1.50-CUA-11.7.0
  cuNN/8.8.0.121-CUA-12.0.0                         
  cutadapt/3.5-GCCcore-11.2.0
  dask/2022.1.0-foss-2021b
  deepTools/3.5.1-foss-2021b
  dill/0.3.6-GCCcore-11.3.0
  dm-tree/0.1.6-GCCcore-11.2.0
  dorado/0.3.0-CUA-11.4.1
  double-conversion/3.1.5-GCCcore-11.2.0
  double-conversion/3.2.0-GCCcore-11.3.0              
  eggnog-mapper/2.1.9-foss-2022a
  einops/0.4.1-GCCcore-11.2.0
  elfutils/0.185-GCCcore-11.2.0
  expat/2.2.7-GCCcore-8.3.0
  expat/2.2.9-GCCcore-10.2.0
  expat/2.4.1-GCCcore-11.2.0
  expat/2.4.8-GCCcore-11.3.0
  expat/2.4.9-GCCcore-12.2.0                          
  expecttest/0.1.3-GCCcore-11.2.0
  fastStructure/1.0-foss-2022a-Python-2.7.18
  fastahack/1.0.0-GCCcore-11.2.0
  fastp/0.23.2-GCC-11.2.0
  fermi-lite/20190320-GCCcore-11.2.0
  file/5.41-GCCcore-11.2.0
  file/5.43-GCCcore-11.3.0                            
  filevercmp/20191210-GCCcore-11.2.0
  flatbuffers-python/2.0-GCCcore-11.2.0
  flatbuffers-python/2.0-GCCcore-11.3.0               
  flatbuffers/2.0.0-GCCcore-11.2.0
  flatbuffers/2.0.7-GCCcore-11.3.0                    
  flex/2.6.4-GCCcore-8.3.0
  flex/2.6.4-GCCcore-10.2.0
  flex/2.6.4-GCCcore-11.2.0
  flex/2.6.4-GCCcore-11.3.0
  flex/2.6.4-GCCcore-12.2.0
  flex/2.6.4                                          
  fontconfig/2.13.94-GCCcore-11.2.0
  fontconfig/2.14.0-GCCcore-11.3.0                    
  foss/2019b
  foss/2021b
  foss/2022a                                          
  freebayes/1.3.6-foss-2021b-R-4.1.2
  freeglut/3.2.1-GCCcore-11.2.0
  freetype/2.11.0-GCCcore-11.2.0
  freetype/2.12.1-GCCcore-11.3.0                      
  fsom/20141119-GCCcore-11.2.0
  gaussian/09-AM-SSE4a
  gaussian/09-Intel-SSE4_2
  gaussian/16-AVX
  gaussian/16-AVX2
  gaussian/16-SSE4                                    
  gc/7.6.12-GCCcore-8.3.0
  gc/8.2.0-GCCcore-11.2.0                             
  gettext/0.19.8.1
  gettext/0.21-GCCcore-11.2.0
  gettext/0.21-GCCcore-11.3.0
  gettext/0.21
  gettext/0.21.1                                      
  gffread/0.12.7-GCCcore-11.2.0
  gflags/2.2.2-GCCcore-11.2.0
  giflib/5.2.1-GCCcore-11.2.0
  giflib/5.2.1-GCCcore-11.3.0                         
  git/2.33.1-GCCcore-11.2.0-nodocs
  git/2.36.0-GCCcore-11.3.0-nodocs                    
  glew/2.2.0-GCCcore-11.3.0-egl
  gnuplot/5.4.2-GCCcore-11.2.0
  gompi/2019b
  gompi/2021b
  gompi/2022a                                         
  googletest/1.11.0-GCCcore-11.3.0
  gperf/3.1-GCCcore-11.2.0
  gperf/3.1-GCCcore-11.3.0                            
  graphite2/1.3.14-GCCcore-11.2.0
  groff/1.22.4-GCCcore-8.3.0
  groff/1.22.4-GCCcore-10.2.0
  groff/1.22.4-GCCcore-11.2.0
  groff/1.22.4-GCCcore-11.3.0
  groff/1.22.4-GCCcore-12.2.0                         
  gzip/1.10-GCCcore-11.2.0
  gzip/1.12-GCCcore-11.3.0                            
  h5py/3.6.0-foss-2021b
  h5py/3.7.0-foss-2022a                               
  help2man/1.47.8-GCCcore-8.3.0
  help2man/1.47.16-GCCcore-10.2.0
  help2man/1.48.3-GCCcore-11.2.0
  help2man/1.49.2-GCCcore-11.3.0
  help2man/1.49.2-GCCcore-12.2.0                      
  hiredis/1.0.2-GCCcore-11.2.0
  hsi/1.0.0-GCCcore-11.2.0
  hwloc/1.11.12-GCCcore-8.3.0
  hwloc/2.2.0-GCCcore-10.2.0
  hwloc/2.5.0-GCCcore-11.2.0
  hwloc/2.7.1-GCCcore-11.3.0
  hwloc/2.8.0-GCCcore-12.2.0                          
  hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18
  hypothesis/4.57.1-GCCcore-11.3.0-Python-2.7.18
  hypothesis/6.14.6-GCCcore-11.2.0
  hypothesis/6.46.7-GCCcore-11.3.0                    
  iccifort/2019.5.281
  igv-reports/1.7.0-GCC-11.2.0-Python-3.9.6
  iimpi/2021b
  imageio/2.13.5-foss-2021b
  imkl-FFTW/2021.4.0-iimpi-2021b
  imkl/2021.4.0
  impi/2021.4.0-intel-compilers-2021.4.0
  intel-compilers/2021.4.0
  intel-compilers/2022.2.1                            
  intel/2021b
  intervaltree/0.1-GCCcore-11.2.0
  intltool/0.51.0-GCCcore-11.2.0
  intltool/0.51.0-GCCcore-11.3.0                      
  jax/0.3.23-foss-2021b-CUA-11.4.1
  jax/0.3.25-foss-2022a-CUA-11.7.0                   
  jbigkit/2.1-GCCcore-11.2.0
  jbigkit/2.1-GCCcore-11.3.0                          
  jemalloc/5.2.1-GCCcore-11.2.0
  jemalloc/5.2.1-GCCcore-11.3.0
  jemalloc/5.3.0-GCCcore-11.3.0                       
  kallisto/0.48.0-gompi-2021b
  kallisto/0.48.0-gompi-2022a                         
  kim-api/2.3.0-GCCcore-11.2.0
  kineto/0.4.0-GCC-11.2.0
  libGLU/9.0.2-GCCcore-11.2.0
  libGLU/9.0.2-GCCcore-11.3.0                         
  libaio/0.3.112-GCCcore-11.2.0
  libaio/0.3.112-GCCcore-11.3.0                       
  libarchive/3.5.1-GCCcore-11.2.0
  libarchive/3.6.1-GCCcore-11.3.0                     
  libcerf/1.17-GCCcore-11.2.0
  libdeflate/1.8-GCCcore-11.2.0
  libdeflate/1.10-GCCcore-11.3.0                      
  libdrm/2.4.107-GCCcore-11.2.0
  libdrm/2.4.110-GCCcore-11.3.0                       
  libepoxy/1.5.8-GCCcore-11.2.0
  libepoxy/1.5.10-GCCcore-11.3.0                      
  libevent/2.1.12-GCCcore-10.2.0
  libevent/2.1.12-GCCcore-11.2.0
  libevent/2.1.12-GCCcore-11.3.0
  libevent/2.1.12-GCCcore-12.2.0                      
  libfabric/1.11.0-GCCcore-10.2.0
  libfabric/1.13.2-GCCcore-11.2.0
  libfabric/1.15.1-GCCcore-11.3.0
  libfabric/1.16.1-GCCcore-12.2.0                     
  libffi/3.2.1-GCCcore-8.3.0
  libffi/3.4.2-GCCcore-11.2.0
  libffi/3.4.2-GCCcore-11.3.0                         
  libgd/2.3.3-GCCcore-11.2.0
  libgeotiff/1.7.0-GCCcore-11.2.0
  libgeotiff/1.7.1-GCCcore-11.3.0                     
  libgit2/1.1.1-GCCcore-11.2.0
  libgit2/1.4.3-GCCcore-11.3.0                        
  libglvnd/1.3.3-GCCcore-11.2.0
  libglvnd/1.4.0-GCCcore-11.3.0                       
  libgtextutils/0.7-GCCcore-11.2.0
  libharu/2.3.0-foss-2021b
  libiconv/1.16-GCCcore-11.2.0
  libiconv/1.17-GCCcore-11.3.0                        
  libidn2/2.3.2-GCCcore-11.3.0
  libjpeg-turbo/2.0.6-GCCcore-11.2.0
  libjpeg-turbo/2.1.3-GCCcore-11.3.0                  
  libmatheval/1.1.11-GCCcore-8.3.0
  libogg/1.3.5-GCCcore-11.2.0
  libogg/1.3.5-GCCcore-11.3.0                         
  libopus/1.3.1-GCCcore-11.3.0
  libpciaccess/0.14-GCCcore-8.3.0
  libpciaccess/0.16-GCCcore-10.2.0
  libpciaccess/0.16-GCCcore-11.2.0
  libpciaccess/0.16-GCCcore-11.3.0
  libpciaccess/0.17-GCCcore-12.2.0                    
  libpng/1.6.37-GCCcore-11.2.0
  libpng/1.6.37-GCCcore-11.3.0                        
  libreadline/8.0-GCCcore-8.3.0
  libreadline/8.0-GCCcore-10.2.0
  libreadline/8.1-GCCcore-11.2.0
  libreadline/8.1.2-GCCcore-11.3.0
  libreadline/8.2-GCCcore-12.2.0                      
  libsigc++/3.4.0-GCCcore-11.2.0
  libsndfile/1.0.31-GCCcore-11.2.0
  libsndfile/1.1.0-GCCcore-11.3.0                     
  libsodium/1.0.18-GCCcore-11.2.0
  libtirpc/1.3.2-GCCcore-11.2.0
  libtirpc/1.3.2-GCCcore-11.3.0                       
  libtool/2.4.6-GCCcore-8.3.0
  libtool/2.4.6-GCCcore-10.2.0
  libtool/2.4.6-GCCcore-11.2.0
  libtool/2.4.7-GCCcore-11.3.0
  libtool/2.4.7-GCCcore-12.2.0                        
  libunistring/0.9.10-GCCcore-8.3.0
  libunistring/1.0-GCCcore-11.2.0                     
  libunwind/1.5.0-GCCcore-11.2.0
  libunwind/1.6.2-GCCcore-11.3.0                      
  libuv/1.37.0-GCCcore-11.3.0
  libvorbis/1.3.7-GCCcore-11.2.0
  libvorbis/1.3.7-GCCcore-11.3.0                      
  libwebp/1.2.0-GCCcore-11.2.0
  libxc/5.1.6-GCC-11.2.0
  libxc/5.2.3-GCC-11.2.0                              
  libxml++/2.42.1-GCC-11.2.0
  libxml2/2.9.9-GCCcore-8.3.0
  libxml2/2.9.10-GCCcore-10.2.0
  libxml2/2.9.10-GCCcore-11.2.0
  libxml2/2.9.13-GCCcore-11.3.0
  libxml2/2.10.3-GCCcore-12.2.0                       
  libxslt/1.1.34-GCCcore-11.2.0
  libxslt/1.1.34-GCCcore-11.3.0                       
  libyaml/0.2.5-GCCcore-11.2.0
  libyaml/0.2.5-GCCcore-11.3.0                        
  lpsolve/5.5.2.11-GCC-11.2.0
  lpsolve/5.5.2.11-GCC-11.3.0                         
  lxml/4.6.3-GCCcore-11.2.0
  lz4/1.9.3-GCCcore-11.2.0
  lz4/1.9.3-GCCcore-11.3.0                            
  maeparser/1.3.0-gompi-2021b
  magma/2.6.2-foss-2021b-CUA-11.4.1
  make/4.3-GCCcore-11.2.0
  make/4.3-GCCcore-11.3.0                             
  makeinfo/6.7-GCCcore-8.3.0-minimal
  makeinfo/6.7-GCCcore-10.2.0-minimal                 
  matlab/R2022b    
  matlab/R2023a
  matplotlib/2.2.5-foss-2021b-Python-2.7.18
  matplotlib/2.2.5-foss-2022a-Python-2.7.18
  matplotlib/3.4.3-foss-2021b
  matplotlib/3.5.2-foss-2021b
  matplotlib/3.5.2-foss-2022a                         
  methylpy/1.4.6-foss-2021b
  minimap2/2.22-GCCcore-11.2.0
  minimap2/2.24-GCCcore-11.2.0                        
  mm-common/1.0.5-GCCcore-11.2.0
  molmod/1.4.8-foss-2021b
  motif/2.3.8-GCCcore-11.2.0
  multichoose/1.0.3-GCCcore-11.2.0
  ncbi-vdb/2.10.9-gompi-2021b
  ncbi-vdb/2.11.2-gompi-2021b
  ncbi-vdb/3.0.2-gompi-2022a                          
  ncurses/6.0
  ncurses/6.1-GCCcore-8.3.0
  ncurses/6.1
  ncurses/6.2-GCCcore-10.2.0
  ncurses/6.2-GCCcore-11.2.0
  ncurses/6.2
  ncurses/6.3-GCCcore-11.3.0
  ncurses/6.3-GCCcore-12.2.0
  ncurses/6.3                                         
  netCF-Fortran/4.5.3-gompi-2021b
  netCF/4.8.1-gompi-2021b
  netCF/4.9.0-gompi-2022a                            
  netMHCpan/4.1b
  nettle/3.7.3-GCCcore-11.2.0
  nettle/3.8-GCCcore-11.3.0                           
  networkx/2.6.3-foss-2021b
  networkx/2.8.4-foss-2022a                           
  nlohmann_json/3.10.5-GCCcore-11.3.0
  nodejs/14.17.6-GCCcore-11.2.0
  nodejs/16.15.1-GCCcore-11.3.0                       
  nsync/1.24.0-GCCcore-11.2.0
  nsync/1.25.0-GCCcore-11.3.0                         
  numactl/2.0.12-GCCcore-8.3.0
  numactl/2.0.13-GCCcore-10.2.0
  numactl/2.0.14-GCCcore-11.2.0
  numactl/2.0.14-GCCcore-11.3.0
  numactl/2.0.16-GCCcore-12.2.0                       
  numexpr/2.8.4-foss-2021b
  pandasql/0.7.3-foss-2021b-Python-3.9.6
  parallel/20210722-GCCcore-11.2.0
  parallel/20221122-GCCcore-11.2.0                    
  pblat/2.5-GCCcore-8.3.0
  picard/2.25.1-Java-11
  picard/2.27.5-Java-15                               
  pigz/2.6-GCCcore-11.2.0
  pixman/0.40.0-GCCcore-11.2.0
  pixman/0.40.0-GCCcore-11.3.0                        
  pkg-config/0.29.2-GCCcore-10.2.0
  pkg-config/0.29.2-GCCcore-11.2.0
  pkg-config/0.29.2-GCCcore-11.3.0                    
  pkgconf/1.8.0-GCCcore-11.2.0
  pkgconf/1.8.0-GCCcore-11.3.0
  pkgconf/1.8.0
  pkgconf/1.9.3-GCCcore-12.2.0                        
  pkgconfig/1.5.5-GCCcore-11.2.0-python
  pkgconfig/1.5.5-GCCcore-11.3.0-python               
  plotly.py/5.4.0-GCCcore-11.2.0
  poppler/22.11.0-GCC-11.2.0
  pplacer/1.1.alpha19
  pretty-yaml/21.10.1-GCCcore-11.2.0
  prodigal/2.6.3-GCCcore-11.2.0
  prodigal/2.6.3-GCCcore-11.3.0                       
  protobuf-python/3.17.3-GCCcore-11.2.0
  protobuf-python/3.19.4-GCCcore-11.3.0               
  protobuf/3.17.3-GCCcore-11.2.0
  protobuf/3.19.4-GCCcore-11.3.0                      
  psutil/5.9.4-GCCcore-11.2.0
  purge_dups/1.2.5-foss-2021b
  pyBigWig/0.3.18-foss-2021b
  pybedtools/0.8.2-GCC-11.2.0
  pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18
  pybind11/2.7.1-GCCcore-11.2.0
  pybind11/2.7.1-GCCcore-11.3.0-Python-2.7.18
  pybind11/2.9.2-GCCcore-11.3.0                       
  pytest-xdist/2.5.0-GCCcore-11.2.0
  pytest-xdist/2.5.0-GCCcore-11.3.0                   
  pytest/7.1.3-GCCcore-11.2.0
  python-isal/0.11.1-GCCcore-11.2.0
  python-isal/1.1.0-GCCcore-11.2.0                    
  re2c/2.2-GCCcore-11.2.0
  rjags/4-12-foss-2021b-R-4.2.1
  scikit-bio/0.5.7-foss-2021b
  scikit-build/0.11.1-GCCcore-11.2.0
  scikit-image/0.19.1-foss-2021b
  scikit-learn/1.0.1-foss-2021b
  scikit-learn/1.1.2-foss-2022a                       
  scikit-optimize/0.9.0-foss-2021b
  seqtk/1.3-GCC-11.2.0
  smithwaterman/20160702-GCCcore-11.2.0
  snappy/1.1.9-GCCcore-11.2.0
  snappy/1.1.9-GCCcore-11.3.0                         
  spaln/2.4.12-GCC-11.2.0
  sparsehash/2.0.4-GCCcore-11.2.0
  spglib-python/1.16.3-foss-2021b
  statsmodels/0.13.1-foss-2021b
  tRNAscan-SE/2.0.12-foss-2021b
  tRNAscan-SE/2.0.12-GCC-11.2.0                       
  tabixpp/1.1.0-GCC-11.2.0
  tbb/2019_U9-GCCcore-8.3.0
  tbb/2020.3-GCCcore-11.2.0
  tbb/2021.5.0-GCCcore-11.3.0                         
  tcsh/6.24.01-GCCcore-11.2.0
  tensorboard/2.8.0-foss-2021b
  time/1.9-GCCcore-11.2.0
  tmux/3.3a-GCCcore-11.3.0
  tqdm/4.62.3-GCCcore-11.2.0
  typing-extensions/3.10.0.2-GCCcore-11.2.0
  ucsc/434
  ucsc/443                                            
  utf8proc/2.6.1-GCCcore-11.2.0
  utf8proc/2.7.0-GCCcore-11.3.0                       
  util-linux/2.37-GCCcore-11.2.0
  util-linux/2.38-GCCcore-11.3.0                      
  vcflib/1.0.3-foss-2021b-R-4.1.2
  wget/1.21.3-GCCcore-11.3.0
  x264/20210613-GCCcore-11.2.0
  x265/3.5-GCCcore-11.2.0
  xorg-macros/1.19.2-GCCcore-8.3.0
  xorg-macros/1.19.2-GCCcore-10.2.0
  xorg-macros/1.19.3-GCCcore-11.2.0
  xorg-macros/1.19.3-GCCcore-11.3.0
  xorg-macros/1.19.3-GCCcore-12.2.0                   
  xprop/1.2.5-GCCcore-11.2.0
  xxd/8.2.4220-GCCcore-11.2.0
  yaff/1.6.0-foss-2021b
  zlib/1.2.11-GCCcore-8.3.0
  zlib/1.2.11-GCCcore-10.2.0
  zlib/1.2.11-GCCcore-11.2.0
  zlib/1.2.11
  zlib/1.2.12-GCCcore-11.3.0
  zlib/1.2.12-GCCcore-12.2.0
  zlib/1.2.12                                         
  zstd/1.5.0-GCCcore-11.2.0
  zstd/1.5.2-GCCcore-11.3.0
Software installed on Rocky 8: Difference between revisions

Latest revision as of 15:32, 4 August 2023

List of software already installed centrally on the Rocky 8 system (new Sapelo2, available after the maintenance)

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