Software Template: Difference between revisions

Revision as of 15:03, 31 January 2013

[[Category:]]

Latest version ... is pointed to ...

Example of a shell script blast.sh to run on at the batch queue:

 #!/bin/bash
 cd working_directory
 time

 qsub -q queuename   ./sub.sh

@@ Line 1: / Line 1: @@
-[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]
+[[Category:Zcluster]][[Category:Software]][[Category:]]
-=== Category: Bioinformatics ===
+=== Category: ===
 === Program on ===
-zcluster
 === Version ===
-.2.26
 === Author / Distributor ===
-[http://www.ncbi.nlm.nih.gov NCBI]
 === Description ===
-BLAST (Basic Local Alignment Search Tool), more details at [http://www.ncbi.nlm.nih.gov NCBI]
 === Running Program ===
@@ Line 22: / Line 14: @@
 Also refer to [[Running Jobs on zcluster]]
-Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26
+Latest version ... is pointed to ...
 Example of a shell script blast.sh to run on at the batch queue:
@@ Line 29: / Line 21: @@
   #!/bin/bash
   cd working_directory
-  time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY
+  time
 </pre>
 <pre  class="gcommand">
-  qsub -q queuename   ./blast.sh
+  qsub -q queuename   ./sub.sh
-</pre>
-<pre  class="gcomment">
- sample of comments
 </pre>
 === Documentation ===
-[[NCBI]] website.
 === Installation ===
-Executable binary code downloaded from [[NCBI Blast]]
 === System(s) ===
-Unix