Software Template: Difference between revisions

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<pre>
[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]   
[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]   
== NCBI Blast ==
=== Category ===
Bioinformatics
=== Category: Bioinformatics ===
=== Program On ===
=== Program on ===
 
zcluster
zcluster
=== Version ===
=== Version ===
2.2.26
   
   
=== Author / Distributor ===
=== Author / Distributor ===
[http://www.ncbi.nlm.nih.gov NCBI]
   
   
=== Description ===
=== Description ===
BLAST (Basic Local Alignment Search Tool), more details at [http://www.ncbi.nlm.nih.gov NCBI]


=== Running Program ===
=== Running Program ===
   
   
Also refer to [[submit jobs to queues]]
Also refer to [[Running Jobs on zcluster]]
Latest version /usr/local/ncbiblast/latest/ is pointed to /usr/local/ncbiblast/2.26
 
Example of a shell script blast.sh to run on at the batch queue:
 
<pre class="gscript">
#!/bin/bash
cd working_directory
time /usr/local/ncbiblast/latest/bin/blastall -p blastn -d /db/ncbiblast/latest/nt -i QUERY -o out.QUERY
</pre>
<pre  class="gcommand">
qsub -q queuename  ./blast.sh
</pre>


=== Documentation ===
=== Documentation ===
[[NCBI]] website.
=== Installation ===
=== Installation ===
=== System ===
Executable binary code downloaded from [[NCBI Blast]]
64-bit Linux
</pre>
=== System(s) ===
Unix

Latest revision as of 16:06, 1 February 2013

[[Category:Zcluster]][[Category:Software]][[Category:Bioinformatics]]  
=== Category ===
Bioinformatics 
=== Program On ===
zcluster
=== Version ===
 
=== Author / Distributor ===
 
=== Description ===

=== Running Program ===
 
Also refer to [[Running Jobs on zcluster]]

=== Documentation ===
=== Installation ===
=== System ===
64-bit Linux
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