Software2: Difference between revisions
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| [[BEDTools-Teaching|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | | [[BEDTools-Teaching|BEDTools]] || 2.26.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | ||
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| [[BLAST-Teaching|BLAST]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]] | |||
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| [[bcl2fastq-Sapelo|bcl2fastq]] || 2.17.1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | | [[bcl2fastq-Sapelo|bcl2fastq]] || 2.17.1.14 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]] | ||
Revision as of 12:19, 15 August 2018
Below is a partial list of software packages installed on Sapelo, Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Installed Software List
Last updated 2018-08-15. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name | Version | Category | Cluster | Top |
|---|---|---|---|---|
| 4p | 1.0 | Bioinformatics | Sapelo | 
|
| 4p | 1.0 | Bioinformatics | Sapelo2 |
|
| ABySS | 2.0.2 | Bioinformatics | Sapelo |
|
| ABySS | 1.9.0, 2.2.2, 2.1.0 | Bioinformatics | Sapelo2 |
|
| AUGUSTUS | 3.2.3 | Bioinformatics | T2eaching |
|
| AUGUSTUS | 3.2.3 | Bioinformatics | Teaching |
|
| BEDTools | 2.26.0 | Bioinformatics | T2eaching |
|
| BEDTools | 2.26.0 | Bioinformatics | Teaching |
|
| BLAST | 2.2.26 | Bioinformatics | Teaching |
|
| bcl2fastq | 2.17.1.14 | Bioinformatics | Sapelo |
|
| BioPerl | 1.7.1 | Bioinformatics | T2eaching |
|
| BioPerl | 1.7.1 | Bioinformatics | Teaching |
|
| Biopython | 1.68 | Bioinformatics | T2eaching |
|
| Biopython | 1.68 | Bioinformatics | Teaching |
|
| SMRTLINK | 5.0.1.9585, 5.1.0.26412 | Bioinformatics | T2eaching |
|
| SMRTLINK | 5.0.1.9585, 5.1.0.26412 | Bioinformatics | Teaching |
|
| Zbar | 0.10 | Graphics | Sapelo |
|
| zlib | 1.2.5, 1.2.8 | Library | Sapelo |
|