Software: Difference between revisions

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<!-- | [[MZmine2-Sapelo2|MZmine2]] || 2.40.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[MZmine2-Sapelo2|MZmine2]] || 2.40.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="N"></span> [[NAL_RNA_seq_annotation-Sapelo2|NAL_RNA_seq_annotation]] ||20200728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="N"></span> [[NAL_RNA_seq_annotation-Sapelo2|NAL_RNA_seq_annotation]] ||20200728 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[NAMD-Sapelo2|NAMD]] || 2.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[NAMD-Sapelo2|NAMD]] || 2.13 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[NWChem-Sapelo2|NWChem]] || 6.8 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[NWChem-Sapelo2|NWChem]] || 6.8 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="O"></span>[[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="O"></span>[[Oases-Sapelo2|Oases]] || 0.2.08, 0.2.09 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OCaml-Sapelo2|OCaml]] || 4.01.0, 4.02.3 || [[:Category:Programming|Programming]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[OrthoMCL-Sapelo2|OrthoMCL]] || 2.0.9 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="P"></span>[[p7zip-Sapelo2|p7zip]] || 16.02 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[PAGIT-Sapelo2|PAGIT]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PAGIT-Sapelo2|PAGIT]] || 1.64 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Pilon-Sapelo2|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- <!-- | [[pilon-Teaching|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[pilon-Teaching|Pilon]] || 1.22 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[PlantCV-Sapelo2|PlantCV]] || 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[PlantCV-Sapelo2|PlantCV]] || 3.8.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[proovread-Sapelo2|proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[proovread-Sapelo2|proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- <!-- | [[proovread-Teaching|Proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[proovread-Teaching|Proovread]] || 2.14.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[protobuf-Sapelo2|protobuf]] || 3.3.0, 3.4.0, 3.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[protobuf-Sapelo2|protobuf]] || 3.3.0, 3.4.0, 3.6.0 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Pweave-Teaching|Pweave]] || 0.30.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Pweave-Teaching|Pweave]] || 0.30.3 || [[:Category:Other|Other]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="Q"></span>[[q2-brocc-Sapelo2|q2-brocc]] || 2018.6.0.dev0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="Q"></span>[[q2-brocc-Sapelo2|q2-brocc]] || 2018.6.0.dev0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[QCTOOL-Sapelo2|QCTOOL]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[QCTOOL-Sapelo2|QCTOOL]] || 2.0.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[QMCPACK-Sapelo2|QMCPACK]] || 3.6.0 || [[:Category:Chemistry|Chemistry]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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|- -->
| <span id ="R"></span>[[R-Sapelo2 |R]] || 3.4.4, 3.5.0, 3.6.1, 3.6.2, 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="R"></span>[[R-Sapelo2 |R]] || 3.4.4, 3.5.0, 3.6.1, 3.6.2, 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| [[R-Teaching|R]] || 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
| [[R-Teaching|R]] || 4.0.0 || [[:Category:Statistics|Statistics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Sailfish-Sapelo2|Sailfish]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Sailfish-Sapelo2|Sailfish]] || 0.10.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="S"></span>[[Sage-Sapelo2|Sage]] || 8.0, 9.0, 9.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="S"></span>[[Sage-Sapelo2|Sage]] || 8.0, 9.0, 9.1 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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|- -->
<!-- | [[Salmon-Sapelo2|Salmon]] || 0.8.2, 0.10.2, 0.13.1, 0.14.1, 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Salmon-Sapelo2|Salmon]] || 0.8.2, 0.10.2, 0.13.1, 0.14.1, 1.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] |<!-- | [[File:Up20.png|20px|link=#top]]  
<!-- | [[Structure-Teaching|Structure]] || 2.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Teaching|Teaching]] |<!-- | [[File:Up20.png|20px|link=#top]]  
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| [[Subread-Sapelo2|Subread]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Subread-Sapelo2|Subread]] || 1.6.2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[SUNTANS-Sapelo2|SUNTANS]] || 20180305 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[SUNTANS-Sapelo2|SUNTANS]] || 20180305 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Synima-Sapelo2|Synima]] || 20181205 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Synima-Sapelo2|Synima]] || 20181205 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="T"></span>[[Tabix-Sapelo2|Tabix]] || 0.2.6 |<!-- | [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="T"></span>[[Tabix-Sapelo2|Tabix]] || 0.2.6 |<!-- | [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[TASSEL-Sapelo2|TASSEL]] || 5.2.44 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[TASSEL-Sapelo2|TASSEL]] || 5.2.44 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[tRNAscan-SE-Sapelo2|TRNAscan-SE]] || 2.0.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="U"></span>[[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="U"></span>[[UCLUST-Sapelo2|UCLUST]] || 1.2.22q || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[ucsc-Sapelo2|ucsc]] || 359 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[Unicycler-Sapelo2|Unicycler]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[Unicycler-Sapelo2|Unicycler]] || 0.4.7 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="V"></span>[[VarScan-Sapelo2|VarScan]] || 2.4.2 |<!-- | [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="V"></span>[[VarScan-Sapelo2|VarScan]] || 2.4.2 |<!-- | [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[VCF-kit-Sapelo2|VCF-kit]] || 0.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[VCF-kit-Sapelo2|VCF-kit]] || 0.1.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[VSEARCH-Sapelo2|VSEARCH]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[VSEARCH-Sapelo2|VSEARCH]] || 2.8.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
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| <span id ="W"></span>[[WGS-Sapelo2|WGS]] || 8.3rc2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="W"></span>[[WGS-Sapelo2|WGS]] || 8.3rc2 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
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<!-- | [[WASP-Sapelo2|WASP]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[WASP-Sapelo2|WASP]] || 0.3.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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| [[WebLogo-Sapelo2|WebLogo]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
<!-- | [[WebLogo-Sapelo2|WebLogo]] || 3.6.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]
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<!-- | [[WEKA-Sapelo2|WEKA]] || 3.8.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[WEKA-Sapelo2|WEKA]] || 3.8.3 || [[:Category:Other|Other]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!-- | [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | [[WU Blast-Sapelo2|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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| <span id ="X"></span> <!-- [[xdot-Teaching|xdot]] || 1.1 || [[:Category:Graphics|Graphics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="X"></span> [[xdot-Teaching|xdot]] || 1.1 || [[:Category:Graphics|Graphics]] || [[:Category:Teaching|Teaching]] || [[File:Up20.png|20px|link=#top]]  
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| --> [[xforms-Sapelo2|xforms]] || 1.2.4 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- |[[xforms-Sapelo2|xforms]] || 1.2.4 || [[:Category:Graphics|Graphics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
|- -->
|- -->
| <span id ="Y"></span>[[YASRA-Sapelo2|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
<!-- | <span id ="Y"></span>[[YASRA-Sapelo2|YASRA]] || 2.33 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo2|Sapelo2]] || [[File:Up20.png|20px|link=#top]]  
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<!--LIST END-->
<!--LIST END-->

Revision as of 23:04, 27 October 2020

Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching: 

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Note: Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see Software on sap2test.


Installed Software List

Last updated 2020-10-27. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
Biopython 1.75 Bioinformatics Teaching Up20.png
BLAST+ 2.9.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
Bowtie2 2.3.5.1, 2.4.1 Bioinformatics Teaching Up20.png
BUSCO 4.0.5, 4.0.6 Bioinformatics Sap2test Up20.png
GAUSSIAN 16 Chemistry Teaching Up20.png
GaussView 6.1 Chemistry Teaching Up20.png
HISAT2 2.1.0 Bioinformatics Teaching Up20.png
IQ-Tree 1.6.12 Bioinformatics Teaching Up20.png
Java 1.8.0_144, 1.8.0_241, 11.0.2 Programming Teaching Up20.png
PAML 4.9i Bioinformatics Teaching Up20.png
Perl 5.30.0 Programming Teaching Up20.png
PRAPI 2.0 Bioinformatics Sapelo2 Up20.png
Python 3.7.4, 2.7.16 Programming Teaching Up20.png
R 4.0.0 Statistics Teaching Up20.png
RAxML 8.2.12 Bioinformatics Teaching Up20.png
SAMtools 0.1.20, 1.9, 1.10 Bioinformatics Teaching Up20.png
WRF-Fire 20170221 Other Sapelo2 Up20.png

Back To Top Up20.png

Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Software&oldid=19431"