RevBayes-Teaching
Category
Bioinformatics
Program On
Teaching
Version
1.0.10
Author / Distributor
Description
" Bayesian phylogenetic inference using probabilistic graphical models and an interactive language." More details are at RevBayes
Running Program
The last version of this application is at /usr/local/apps/gb/RevBayes/1.0.10
To use this version, please load the module with
ml RevBayes/1.0.10
Here is an example of a shell script, sub.sh, to run on the batch queue:
#!/bin/bash
#SBATCH --job-name=j_RevBayes
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=10gb
#SBATCH --time=08:00:00
#SBATCH --output=RevBayes.%j.out
#SBATCH --error=RevBayes.%j.err
cd $SLURM_SUBMIT_DIR
ml RevBayes/1.0.10
rb [options]
In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.
Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for more details of running jobs at Teaching cluster.
Here is an example of job submission command:
sbatch ./sub.sh
Documentation
ml RevBayes/1.0.10
rb -h
Usage: rb [OPTIONS]
rb [OPTIONS] <file1> [<file2> ...]
Bayesian phylogenetic inference using probabilistic graphical models and an interpreted language
Options:
-h [ --help ] Show information on flags.
-v [ --version ] Show version and exit.
-b [ --batch ] Run in batch mode.
--file arg File(s) to source.
--setOption arg Set an option key=value.
See http://revbayes.github.io for more information
Installation
Source code is obtained from RevBayes
System
64-bit Linux