ICommands-Sapelo2

Category

Tools

Program On

Sapelo2

Version

4.1.12

Author / Distributor

Please see iCommands

Description

From iCommands: "iCommands is a collection of commands for Linux and Mac OS operating systems that are used in the iRODS system to interact with the CyVerse Data Store."

Running Program

Also refer to [[]].

• version 4.1.12, installed on Sapelo2 transfer nodes (xfer.gacrc.uga.edu)

Please log on Sapelo2 cluster transfer node to use iCommands.

ssh username@xfer.gacrc.uga.edu

The blast results for the each of the split group will be in a separate file under the specified output directory. The file name will end in fa.OUT. To gather the blast output you can generally concatenate all the individual outputs. You can use the following command to find and concatenate all the output files.

find OUTPUT_DIR -name '*.fa.OUT' | xargs cat > combined_blast_results.out

Documentation

Please see http://hpcgridrunner.github.io/

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Installation

Installed in /apps/eb/HpcGridRunner/1.0.2

System

64-bit Linux