Difference between revisions of "BLAST Databases-Sapelo2"
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(Created page with "Category:Sapelo2Category:SoftwareCategory:BioinformaticsCategory:Bioinformatics Database Lasted version is always at /db/ncbiblast/nrte/latest/ and /db/ncb...") |
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[[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]][[Category:Bioinformatics Database]] | [[Category:Sapelo2]][[Category:Software]][[Category:Bioinformatics]][[Category:Bioinformatics Database]] | ||
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− | + | '''Blast database - version 4''' | |
− | + | Each database is located at a directory with name pattern as /db/ncbiblast/''dbname''/''year-month-date'', where ''dbname'' is the name of the database, such as nr, nt, taxdb, refseq_rna, refseq_protein, mouse_genome, human_genome, swissprot, etc. | |
− | + | For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast/nr/20200604. | |
− | + | Available databases: | |
<pre class="gscript"> | <pre class="gscript"> | ||
− | /db/ncbiblast/ | + | /db/ncbiblast/human_genome/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/mouse_genome/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/nr/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/nt/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/refseq_rna/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/refseq_protein/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/swissprot/20200604 |
− | /db/ncbiblast/ | + | /db/ncbiblast/taxdb/20200604 |
</pre> | </pre> | ||
+ | |||
+ | |||
+ | '''Blast database - version 5''' | ||
+ | |||
+ | Each database is located at a directory with name pattern as /db/ncbiblast.v5/''dbname'', where ''dbname'' is the name of the database, such as nr, nt, taxdb, refseq_rna, swissprot, etc. | ||
+ | |||
+ | For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast.v5/nr | ||
+ | |||
[[#top|Back to Top]] | [[#top|Back to Top]] |
Revision as of 22:35, 4 June 2020
Blast database - version 4
Each database is located at a directory with name pattern as /db/ncbiblast/dbname/year-month-date, where dbname is the name of the database, such as nr, nt, taxdb, refseq_rna, refseq_protein, mouse_genome, human_genome, swissprot, etc.
For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast/nr/20200604.
Available databases:
/db/ncbiblast/human_genome/20200604 /db/ncbiblast/mouse_genome/20200604 /db/ncbiblast/nr/20200604 /db/ncbiblast/nt/20200604 /db/ncbiblast/refseq_rna/20200604 /db/ncbiblast/refseq_protein/20200604 /db/ncbiblast/swissprot/20200604 /db/ncbiblast/taxdb/20200604
Blast database - version 5
Each database is located at a directory with name pattern as /db/ncbiblast.v5/dbname, where dbname is the name of the database, such as nr, nt, taxdb, refseq_rna, swissprot, etc.
For example, an nr database downloaded on June 04, 2020 will be available in /db/ncbiblast.v5/nr