Gocryptfs-Sapelo2

Category

Other

Program On

Sapelo2

Version

2.5.2

Author / Distributor

Please see https://nuetzlich.net/gocryptfs/

Description

Gocryptfs is an implementation of an encryption overlay filesystem, which uses file-based encryption that is implemented as a mountable FUSE filesystem.

For more details see

• gocryptfs homepage

• gocryptfs source code

• Security design documentation

Running Program

To use gocryptfs on Sapelo2, you need to do the following steps:

1. Load the gocryptfs module with

ml gocryptfs/2.5.2

• Version 3.9.1 is installed in /apps/eb/Cytoscape/3.9.1-Java-11

To use version 3.9.1, please first load the module with

ml Cytoscape/3.9.1-Java-11

This program has a graphical interface. Please refer to Run interactive Jobs and Run X window Jobs.

To run this program in an interactive session using the graphical front end: Start an X terminal (Mac), X window (Windows) at the local computer first, then

interact -x11
ml Cytoscape/3.9.1-Java-11
Cytoscape [options]
exit

To run as a batch job, you might have to create a script file with the cytoscape execution commands.

Example of a job submission script sub.sh to run a batch job (note: this is not the cytoscape execution command script):

#!/bin/bash
#SBATCH --job-name=jobname
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=4gb
#SBATCH --time=04:00:00
#SBATCH --output=%j.out
#SBATCH --error=%j.err

cd $SLURM_SUBMIT_DIR

ml Cytoscape/3.9.1-Java-11

cytoscape.sh [options]

where [options] need to be replaced by the options (command and arguments) you want to use. Other parameters of the job, such as the maximum wall clock time, maximum memory, and the job name need to be modified appropriately as well.

Example of submission to the queue:

sbatch ./sub.sh

Documentation

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Installation

Code downloaded from

System

64-bit Linux