Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Note: Although we have not made individual software pages for the applications installed on on the Slurm test cluster (Sap2test), there are currently over 550 software packages installed there. For information on software installed there, please see Software on sap2test.
Installed Software List
Last updated 2020-10-27.
Note: Click on the icons to the right of the column headings to sort the table.
0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name
|
Version
|
Category
|
Cluster
|
Top
|
|
|
|
|
Biopython |
1.75 |
Bioinformatics |
Teaching |
|
| BLAST+ |
2.9.0 |
Bioinformatics |
Teaching |
|
| BLAST |
2.2.26 |
Bioinformatics |
Teaching |
|
| Bowtie2 |
2.3.5.1, 2.4.1 |
Bioinformatics |
Teaching |
|
| BUSCO |
4.0.5, 4.0.6 |
Bioinformatics |
Sap2test |
|
|
|
Dadi |
1.7.0, 2.0.2 |
Bioinformatics |
Sapelo2 |
|
|
|
|
|
GAUSSIAN |
16 |
Chemistry |
Teaching |
|
| GaussView |
6.1 |
Chemistry |
Teaching |
|
|
|
HISAT2 |
2.1.0 |
Bioinformatics |
Teaching |
|
|
|
IQ-Tree |
1.6.12 |
Bioinformatics |
Teaching |
|
|
|
Java |
1.8.0_144, 1.8.0_241, 11.0.2 |
Programming |
Teaching |
|
|
|
|
|
Montreal Forced Aligner |
1.0.1 |
Other |
Sapelo2 |
|
| NAL_RNA_seq_annotation |
20200728 |
Bioinformatics |
Sapelo2 |
|
| Oases |
0.2.08, 0.2.09 |
Bioinformatics |
Sapelo2 |
|
| p7zip |
16.02 |
Other |
Sapelo2 |
|
| PAML |
4.9i |
Bioinformatics |
Teaching |
|
| Perl |
5.30.0 |
Programming |
Teaching |
|
| PRAPI |
2.0 |
Bioinformatics |
Sapelo2 |
|
| Python |
3.7.4, 2.7.16 |
Programming |
Teaching |
|
| q2-brocc |
2018.6.0.dev0 |
Bioinformatics |
Sapelo2 |
|
| R |
3.4.4, 3.5.0, 3.6.1, 3.6.2, 4.0.0 |
Statistics |
Sapelo2 |
|
| R |
4.0.0 |
Statistics |
Teaching |
|
| RAxML |
8.2.12 |
Bioinformatics |
Teaching |
|
| Sage |
8.0, 9.0, 9.1 |
Other |
Sapelo2 |
|
| SAMtools |
0.1.20, 1.9, 1.10 |
Bioinformatics |
Teaching |
|
| Subread |
1.6.2 |
Bioinformatics |
Sapelo2 |
|
| Tabix |
|
UCLUST |
1.2.22q |
Bioinformatics |
Sapelo2 |
|
| VarScan |
|
WGS |
8.3rc2 |
Bioinformatics |
Sapelo2 |
|
| WebLogo |
3.6.0 |
Bioinformatics |
Sapelo2 |
|
| WRF-Fire |
20170221 |
Other |
Sapelo2 |
|
|
|
--> xforms |
1.2.4 |
Graphics |
Sapelo2 |
|
| YASRA |
2.33 |
Bioinformatics |
Sapelo2 |
|
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