GET HOMOLOGUES-Teaching

Category

Bioinformatics

Program On

Teaching

Version

1.7.6

Author / Distributor

GET_HOMOLOGUES

Description

" a versatile software package for pan-genome analysis" More details are at GET_HOMOLOGUES

Running Program

The last version of this application is at /usr/local/apps/gb/GETHOMOLOGUES/1.7.6

To use this version, please load the module with

ml GETHOMOLOGUES/1.7.6 

Here is an example of a shell script, sub.sh, to run on the batch queue:

#!/bin/bash
#SBATCH --job-name=j_GET_HOMOLOGUES
#SBATCH --partition=batch
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@uga.edu
#SBATCH --ntasks=1
#SBATCH --mem=10gb
#SBATCH --time=08:00:00
#SBATCH --output=GET_HOMOLOGUES.%j.out
#SBATCH --error=GET_HOMOLOGUES.%j.err

cd $SLURM_SUBMIT_DIR
ml GETHOMOLOGUES/1.7.6
perl /usr/local/apps/gb/GETHOMOLOGUES/1.7.6/get_homologues.pl [options]

In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values.

Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for more details of running jobs at Teaching cluster.

Here is an example of job submission command:

sbatch ./sub.sh 

Documentation

ml GETHOMOLOGUES/1.7.6 
perl /usr/local/apps/gb/GETHOMOLOGUES/1.7.6/get_homologues.pl -h
[https://github.com/eead-csic-compbio/get_homologues GET_HOMOLOGUES]

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Installation

Source code is obtained from GET_HOMOLOGUES

System

64-bit Linux