YH-S2-Template

Category

Bioinformatics 

Program On

Sapelo2

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

The last version of this application is at trinity

ml <!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END -->

Here is an example of a shell script, sub.sh, to run on at the batch queue:

#PBS -S /bin/bash
#PBS -N j_trinity
#PBS -q batch
#PBS -l nodes=1:ppn=1:AMD
#PBS -l walltime=8:00:00
#PBS -l mem=10gb
#PBS -M username@uga.edu
#PBS -m abe

cd $PBS_O_WORKDIR

[options]
    

In the real submission script, at least all the above underlined values need to be reviewed or to be replaced by the proper values or be reviewed .

Please refer to Running Jobs on Sapelo2, Run X window Jobs and Run interactive Jobs for more details about running jobs at Sapelo2.

Here is an example of job submission command:

qsub  ./sub.sh 

Documentation

<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

Source code is obtained from Trinity

System

64-bit Linux