YH-T-Template

Category

Bioinformatics 

Program On

Teaching

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

Please refer to Running Jobs on Teaching, Run X window Jobs and Run interactive Jobs for generic details about running jobs at Teaching.

The last version of this application is at trinity

Here is an example of a shell script, sub.sh, to run on at the batch queue:

#!/bin/bash
#SBATCH --job-name=j_<!-- NAME BEGIN -->trinity<!-- NAME END -->        
#SBATCH --partition=batch             
#SBATCH --mail-type=AIL          
#SBATCH --mail-user=username@uga.edu  
#SBATCH --ntasks=1                    
#SBATCH --mem=10gb                     
#SBATCH --time=08:00:00               
#SBATCH --output=<!-- NAME BEGIN -->trinity<!-- NAME END -->.%j.out
    
cd $SLURM_SUBMIT_DIR

cd $PBS_O_WORKDIR
<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options]   

Here is an example of job submission command:

sbatch ./sub.sh 

Documentation

<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

Source code is obtained from Trinity

System

64-bit Linux