Training

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Training Sessions

The GACRC regularly hosts training sessions on a number of subjects relevant to the use of our computational and storage resources. Scheduled trainings will be announced through the GACRC mailing list.

NOTE: New users are required to attend an introductory training session and information about that will be sent once an account is requested.


Event Announcement

Dear GACRC user,

The GACRC is going to host eight training workshops in this October 2015 at Life Sciences Building, room C128. The eight workshops will provide an introduction to the GACRC Linux high performance computing (HPC) clusters, GACRC storage environment, and the Linux basics.


Who Should Attend:

New HPC cluster and zcluster users, or researchers who are interested in learning about the GACRC computing resources and Linux basics (Linux OS, Linux shell and shell scripting. etc.).


Details:

Title: Introduction to HPC Using zcluster at GACRC

Date: October 2nd, 2015, Friday

Time: 10:00 AM - 11:30 AM

Location: Life Sciences Building, room C128

Focus:

What's zcluster at GACRC

zcluster current computing resources

zcluster software environment

How to work with zcluster, e.g., how to run interactive jobs; how to run batch jobs and request computing resources; how to make job submission scripts; how to check job status, etc.


Title: Introduction to Linux Basics Part-I

Date: October 5th, 2015, Monday

Time: 2:00 PM - 3:30 PM

Location: Life Sciences Building, room C128

Focus:

Linux OS and brief history

Linux command, filesystem, and shell

Linux common commands, etc.


Title: Introduction to HPC Using the New Cluster at GACRC

Date: October 9th, 2015, Friday

Time: 10:00 AM - 11:30 AM

Location: Life Sciences Building, room C128

Focus:

What's the new cluster at GACRC

New cluster's current computing resources

New cluster software environment

How to operate with the new cluster

How to work with the new cluster, e.g., how to run interactive jobs; how to run batch jobs; how to make job submission scripts and request computing resources; how to check job status, etc.


Title: Introduction to HPC Using zcluster at GACRC

Date: October 12th, 2015, Monday

Time: 2:00 PM - 3:30 PM

Location: Life Sciences Building, room C128

Focus

What's zcluster at GACRC

zcluster current computing resources

zcluster software environment

How to work with zcluster, e.g., how to run interactive jobs; how to run batch jobs and request computing resources; how to make job submission scripts; how to check job status, etc.


Title: Introduction to GACRC Storage Environment

Date: October 16th, 2015, Friday

Time: 10:00 AM - 11:30 AM

Location: Life Sciences Building, room C128

Focus:

Overview of Linux common commands related to file and folder operations

Overview of the storage enviornment of zcluster and the new cluster at GACRC

How to transfer data between local and GACRC storage

New file transfer node xfer2 and how to use it to transfer data between zcluster and the new cluster

GACRC suggestions on good practices on GACRC storage, etc;


Title: Introduction to HPC Using the New Cluster at GACRC

Date: October 19th, 2015, Monday

Time: 2:00 PM - 3:30 PM

Location: Life Sciences Building, room C128

Focus:

What's the new cluster at GACRC

New cluster's current computing resources

New cluster software environment

How to operate with the new cluster

How to work with the new cluster, e.g., how to run interactive jobs; how to run batch jobs; how to make job submission scripts and request computing resources; how to check job status, etc.


Title: Introduction to Linux Basics Part-II (Basic Linux knowledge required)

Date: October 23th, 2015, Friday

Time: 10:00 AM - 11:30 AM

Location: Life Sciences Building, room C128

Focus:

Linux shell

Common practices on Linux shell scripting

Common Linux utilities, e.g., sort, find, grep, awk, and sed etc.


Title: Introduction to Batch Process Jobs on Linux (Basic Linux knowledge required)

Date: October 26th, 2015, Monday

Time: 2:00 PM - 3:30 PM

Location: Life Sciences Building, room C128

Focus:

How to use Bachsub scripts to populate a template submission scripts to a set of submission scripts based on the files in data directory. Originally this method is used to process multiple samples/libraries to run in trinity, tophat/cufflink pipeline


If you would like to attend, please respond by email to: zhuofei@uga.edu. Also please tell us which session you want to attend.

We have 25 seats in the lab room, so we have a 25 user/workshop limit. Please respond at your earliest convenience to register to guarantee your seat. You are welcome and encouraged to attend those workshops to learn about how to work with the HPC clusters at the GACRC.

The GACRC is going to host other training workshops and seminars covering various HPC topics, including HPC introduction, Linux working environment (Linux Basics, Part III), scientific programming languages, etc., in the near future. We will announce those events when they are scheduled.

The GACRC Web Training page can be found at http://gacrc.uga.edu/help/training/ and the GACRC Wiki Training page can be found at https://wiki.gacrc.uga.edu/wiki/Training, from which you can find detailed information about upcoming and past training sessions from GACRC and download training materials.


Sincerely,

GACRC Staff


Upcoming Sessions

The GACRC is going to host two rest training workshops in this September and eight training workshops in this October at Life Sciences Building, room C128. The workshops will provide an introduction to the Linux basics and GACRC Linux high performance computing (HPC) clusters and other computing resources.

Presentation Date/Time Location Title
October 16th, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to GACRC Storage Environment
October 19th, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
October 23rd, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to Linux Basics Part-II (Basic Linux knowledge required)
October 26th, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to Batch Process Jobs on Linux (Basic Linux knowledge required)

Past Sessions

Presentation Date/Time Location Title
October 12th, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
October 9th, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
October 5th, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to Linux Basics Part-I
October 2nd, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
September 28th, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to GACRC Storage Environment
September 25th, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
September 21st, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to Linux Basics Part-I
September 18th, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
September 14th, 2015, Monday, 2:00 PM - 3:30 PM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
September 11th, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
September 4th, 2015, Friday, 10:00 AM - 11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
August 28th, 2015, Friday, 10:00 AM-11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
August 24th, 2015, Monday, 2:00 PM-3:30 PM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
August 17th, 2015, Monday, 2:00 PM-3:30 PM Davison Life Sciences Complex C128 Introduction to Linux Basics Part-I
August 14th, 2015, Friday, 10:00 AM-11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
August 10th, 2015, Monday, 2:00 PM-3:30 PM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
July 27th, 2015, Monday, 10:00 AM-11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
July 27th, 2015, Monday, 2:00 PM-3:30 PM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC
July 20th, 2015, Monday, 10:00 AM-11:30 AM Davison Life Sciences Complex C128 Introduction to Linux Basics Part-I
June 22nd, 2015, Monday, 10:00 AM-11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using zcluster at GACRC
June 15th, 2015, Monday, 10:00 AM-11:30 AM Davison Life Sciences Complex C128 Introduction to HPC Using the New Cluster at GACRC

Presentation Slides Download

GACRC Computing Resources

Workshop PDF
media: Introduction to HPC Using the New Cluster at GACRC Workshop20150922 v5.pdf
media: Introduction to HPC Using zcluster at GACRC Workshop20150922 v3.pdf
media: Introduction to GACRC Storage Environment Workshop20150928 v1.pdf

Linux Basics

Workshop PDF
media: Introduction to Linux Basics Part-I Workshop20150915 v2.pdf

Out-Reach Talk

Dept./Center/Institute Date Workshop PDF
The Institute of Bioinformatics and the Quantitative Biology Consulting Group 2015-10-14 media: Introduction to HPC Resources at GACRC BBB Talk 20151014.pdf
The Center for Simulational Physics 2015-09-15 media: Introduction to HPC Using the New Cluster at GACRC Workshop CSP20150915 v2.pdf

On-Class Training

Course ID Course Title Workshop PDF
STAT 8060 Computing Techniques in Statistics I media: Introduction to HPC Using zcluster at GACRC Workshop20150826-STAT8060.pdf
MIBO 8150 Introduction to UGA Research Resources media: Introduction to HPC Resources at GACRC MIBO8150 10072015.pdf


NOTE: The slides may become outdated and you should always check GACRC Wiki for up to date information.