PfamDB-Sapelo2

A database for Hmmer and Pfam_scan program

There are multiple versions under /db/pfam

/db/pfam/

The command generated the data is documented at UGA file sitting at the same directory with data:

formatdb -i Pfam-A.fasta -n Pfam-A -t Pfam-A -l Pfam-A.log -p T
formatdb -i Pfam-B.fasta -n Pfam-A -t Pfam-A -l Pfam-A.log -p T
ml HMMER/3.1b2-foss-2016b
hmmpress Pfam-A.hmm
hmmpress Pfam-B.hmm
ml WU-Blast/2.2.6-foss-2016b
xdformat -p -x Pfam-A.fasta
xdformat -p Pfam-B.fasta

version built with hmmer 3.0 (Pfam_scan friendly)

/db/pfam/27.0-hmmer3.0/Pfam-A
/db/pfam/27.0-hmmer3.0/Pfam-B
/db/pfam/27.0-hmmer3.0/Pfam-A.hmm
/db/pfam/27.0-hmmer3.0/Pfam-B.hmm

Databases are download install files from sanger website.