Below is a partial list of software packages installed on Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Installed Software List
Last updated 2018-11-26.
Note: Click on the icons to the right of the column headings to sort the table.
0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name
|
Version
|
Category
|
Cluster
|
Top
|
| 4p |
1.0 |
Bioinformatics |
Sapelo2 |
|
| ABySS |
1.9.0, 2.0.2, 2.1.0 |
Bioinformatics |
Sapelo2 |
|
| ADMIXTURE |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
| aeneas |
1.7.3 |
Other |
Sapelo2 |
|
| AFNI |
17.3.05 |
Other |
Sapelo2 |
|
| AlignGraph |
20180709 |
Bioinformatics |
Sapelo2 |
|
| AlleleSeq_pipeline |
1.2a |
Bioinformatics |
Sapelo2 |
|
| Allim |
1.2 |
Bioinformatics |
Sapelo2 |
|
| AMBER |
14 |
Chemistry |
Sapelo2 |
|
| AMOS |
3.1.0 |
Bioinformatics |
Sapelo2 |
|
| Anaconda2 |
5.0.1 |
Programming |
Sapelo2 |
|
| Anaconda3 |
5.0.1 |
Programming |
Sapelo2 |
|
| annovar |
2017Jul16 |
Bioinformatics |
sapelo2 |
|
| anvi'o |
4, 5.1 |
Bioinformatics |
sapelo2 |
|
| Aragorn |
1.2.38 |
Bioinformatics |
Sapelo2 |
|
| Arlequin |
3.5.2.2 |
Bioinformatics |
Sapelo2 |
|
| ART |
20160605 |
Bioinformatics |
Sapelo2 |
|
| Artemis |
17.0.1 |
Bioinformatics |
Sapelo2 |
|
| Artemis |
17.0.1 |
Bioinformatics |
Teaching |
|
| ASTRAL |
5.6.1 |
Bioinformatics |
Sapelo2 |
|
| ATk |
2.22.0 |
Other |
Sapelo2 |
|
| ATLAS |
3.10.2 |
Other |
Sapelo2 |
|
| AUGUSTUS |
3.2.3 |
Bioinformatics |
Sapelo2 |
|
| AUGUSTUS |
3.2.3 |
Bioinformatics |
Teaching |
|
| BamTools |
2.4.1 |
Bioinformatics |
Sapelo2 |
|
| Barrnap |
0.9 |
Bioinformatics |
Sapelo2 |
|
| basespace-cli |
0.9.17 |
Bioinformatics |
Sapelo2 |
|
| BayesAss |
3.0.4 |
Bioinformatics |
Sapelo2 |
|
| Bazel |
0.8.1, 0.11.1 |
Other |
Sapelo2 |
|
| BBMap |
37.67 |
Bioinformatics |
Sapelo2 |
|
| BCFtools |
1.1, 1.3.1, 1.6, 1.8, 1.9 |
Bioinformatics |
Sapelo2 |
|
| BCFtools |
1.3.1, 1.6, 1.8 |
Bioinformatics |
Teaching |
|
| bcl2fastq |
2.20.0 |
Bioinformatics |
Sapelo2 |
|
| Beast |
1.8.4, 1.10.1, 1.10.3, 1.10.4, 2.4.8pre, 2.4.8, 2.5.0 |
Bioinformatics |
Sapelo2 |
|
| BEDOPS |
2.4.30 |
Bioinformatics |
Sapelo2 |
|
| BEDTools |
2.26.0 |
Bioinformatics |
Sapelo2 |
|
| BEDTools |
2.26.0 |
Bioinformatics |
Teaching |
|
| bioawk |
1.0 |
Bioinformatics |
Sapelo2 |
|
| BioKanga |
21.0.0 |
Bioinformatics |
Sapelo2 |
|
| BionanoSolve |
3.2.1-04122018, 3.2.2-08222018 |
Bioinformatics |
Sapelo2 |
|
| BioPerl |
1.7.1 |
Bioinformatics |
Sapelo2 |
|
| BioPerl |
1.7.1 |
Bioinformatics |
Teaching |
|
| BioPython |
1.68 |
Bioinformatics |
Sapelo2 |
|
| Biopython |
1.68 |
Bioinformatics |
Teaching |
|
| Bison |
2.7, 3.0.2, 3.0.4 |
Other |
Sapelo2 |
|
| BLASR |
2.2 |
Bioinformatics |
Sapelo2 |
|
| BLAST+ |
2.6.0, 2.7.1 |
Bioinformatics |
Sapelo2 |
|
| BLAST+ |
2.6.0 |
Bioinformatics |
Teaching |
|
| BLAST |
2.2.26 |
Bioinformatics |
Sapelo2 |
|
| BLAST |
2.2.26 |
Bioinformatics |
Teaching |
|
| BLAT |
3.4, 3.5 |
Bioinformatics |
Sapelo2 |
|
| Blosc |
1.12.1 |
Library |
Sapelo2 |
|
| Boost |
1.54.0, 1.61.0, 1.63.0, 1.65.1 |
Library |
Sapelo2 |
|
| Boto3 |
1.9.14 |
Other |
Sapelo2 |
|
| bowtie2 |
2.2.3, 2.3.3, 2.3.4.1 |
Bioinformatics |
Sapelo2 |
|
| Bowtie2 |
2.2.3, 2.3.3, 2.3.4.1 |
Bioinformatics |
Teaching |
|
| Bowtie |
1.2.2 |
Bioinformatics |
Sapelo2 |
|
| braker |
2.0.5 |
Bioinformatics |
Sapelo2 |
|
| BreakDancer |
1.4.5-foss-2016b |
Bioinformatics |
Sapelo2 |
|
| BS-Seeker2 |
2.1.5 |
Bioinformatics |
Sapelo2 |
|
| BUSCO |
2.0, 3.0.2 |
Bioinformatics |
Sapelo2 |
|
| BUSCO |
3.0.2 |
Bioinformatics |
Teaching |
|
| BWA |
0.7.15, 0.7.17 |
Bioinformatics |
Sapelo2 |
|
| BWA |
0.7.17, 0.7.15 |
Bioinformatics |
Teaching |
|
| Caffe |
04082018 |
Other |
Sapelo2 |
|
| cairo |
1.14.6, 1.14.10, 1.14.12 |
Bioinformatics |
Sapelo2 |
|
| Canu |
1.7, 1.7.1 |
Bioinformatics |
Sapelo2 |
|
| Canu |
1.4, 1.5, 1.6, 1.7 |
Bioinformatics |
Teaching |
|
| CAP-miRSeq |
05/20184 |
Bioinformatics |
Sapelo2 |
|
| CAP3 |
03092015 |
Bioinformatics |
Sapelo2 |
|
| CD-HIT |
4.6.8 |
Bioinformatics |
Sapelo2 |
|
| CDNA_Cupcake |
5.9 |
Bioinformatics |
Sapelo2 |
|
| CENSOR |
4.2.29 |
Bioinformatics |
Sapelo2 |
|
| CFITSIO |
3.38 |
Library |
Sapelo2 |
|
| CGAL |
4.11 |
Library |
Sapelo2 |
|
| Cgmaptools |
0.1.1 |
Bioinformatics |
Sapelo2 |
|
| Chimera |
1.13 |
Bioinformatics |
Sapelo2 |
|
| Chromosomer |
0.1.3, 0.1.4a0 |
Bioinformatics |
Sapelo2 |
|
| Chromosomer |
0.1.4a |
Bioinformatics |
Teaching |
|
| circlator |
1.5.3 |
Bioinformatics |
Sapelo2 |
|
| Circos |
0.69-6 |
Bioinformatics |
Sapelo2 |
|
| Cleaveland4 |
4.4 |
Bioinformatics |
Sapelo2 |
|
| Clustal-Omega |
1.2.4 |
Bioinformatics |
Sapelo2 |
|
| ClustalW2 |
2.1 |
Bioinformatics |
Sapelo2 |
|
| CMake |
3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 |
Other |
Sapelo2 |
|
| CNVnator |
0.3.3 |
Bioinformatics |
Sapelo2 |
|
| Cogent |
3.5 |
Bioinformatics |
Sapelo2 |
|
| Consed |
29.0 |
Bioinformatics |
Sapelo2 |
|
| CPLEX |
12.6.3 |
Engineering |
Sapelo2 |
|
| crest |
1.0 |
Bioinformatics |
Sapelo2 |
|
| CRISPResso |
1.0.13 |
Bioinformatics |
Sapelo2 |
|
| CUDA |
7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176, 9.1.85 |
Programming |
Sapelo2 |
|
| cuDNN |
7.0.4, 7.2.1.38 |
Programming |
Sapelo2 |
|
| Cufflinks |
2.2.1 |
Bioinformatics |
Sapelo2 |
|
| Cufflinks |
2.2.1 |
Bioinformatics |
Teaching |
|
| cURL |
7.49.1 |
Other |
Sapelo2 |
|
| cutadapt |
1.9.1, 1.14, 1.16 |
Bioinformatics |
Sapelo2 |
|
| Cython |
0.27.3, 0.28.5 |
Programming |
Sapelo2 |
|
| CythonGSL |
0.2.2 |
Other |
Sapelo2 |
|
| Danpos2 |
2.2.2 |
Bioinformatics |
Sapelo2 |
|
| Darknet |
3 |
Other |
Sapelo2 |
|
| DBG2OLC |
20170208 |
Bioinformatics |
Sapelo2 |
|
| DBG2OLC |
20170208 |
Bioinformatics |
Teaching |
|
| DDSCAT |
7.3.2 |
Chemistry |
Sapelo2 |
|
| deepTools |
3.0.2 |
Bioinformatics |
Sapelo2 |
|
| DeepVariant |
0.7.0 |
Bioinformatics |
Sapelo2 |
|
| DendroPy |
4.3.0 |
Bioinformatics |
Sapelo2 |
|
| detonate |
1.11 |
Bioinformatics |
Sapelo2 |
|
| DIAMOND |
1.0 |
Bioinformatics |
Sapelo2 |
|
| DIAMOND |
1.0 |
Bioinformatics |
Teaching |
|
| DISCOVARdenovo |
52488 |
Bioinformatics |
Sapelo2 |
|
| DLCpar |
1.0 |
Bioinformatics |
Sapelo2 |
|
| Doxygen |
1.8.7, 1.8.11, 1.8.13 |
Other |
Sapelo2 |
|
| DyNet |
2.1 |
Other |
Sapelo2 |
|
| EggNOG-Mapper |
1.0.3 |
Bioinformatics |
Sapelo2 |
|
| [[|Eigen-Sapelo2|Eigen]] |
3.2.3, 3.3.5 |
Library |
Sapelo2 |
|
| EIGENSOFT |
6.1.4 |
Bioinformatics |
Sapelo2 |
|
| EMBOSS |
6.6.0 |
Bioinformatics |
Sapelo2 |
|
| EMBOSS |
6.6.0 |
Bioinformatics |
Teaching |
|
| EMMAX beta |
beta |
Bioinformatics |
Sapelo2 |
|
| Ensembl-VEP |
20180914 |
Bioinformatics |
Sapelo2 |
|
| EricScript |
0.5.5 |
Bioinformatics |
Sapelo2 |
|
| ESMF |
7.0.2 |
Other |
Sapelo2 |
|
| eSpeak |
1.48.04 |
Other |
Sapelo2 |
|
| EVcouplings |
0.0.5 |
Bioinformatics |
Sapelo2 |
|
| Exonerate |
2.4.0 |
Bioinformatics |
Sapelo2 |
|
| Exonerate |
2.4.0 |
Bioinformatics |
Teaching |
|
| FALCON |
02282018_unzip |
Bioinformatics |
Sapelo2 |
|
| Fast-Plast |
1.2.6 |
Bioinformatics |
Sapelo2 |
|
| FASTA |
36.3.5e |
Bioinformatics |
Sapelo2 |
|
| FastME |
2.1.5 |
Bioinformatics |
Sapelo2 |
|
| FastQC |
0.11.5,0.11.8 |
Bioinformatics |
Sapelo2 |
|
| FastQValidator |
0.1.1a |
Bioinformatics |
Sapelo2 |
|
| FastSTRUCTURE |
1.0 |
Bioinformatics |
Sapelo2 |
|
| FastTree |
2.1.10 |
Bioinformatics |
Sapelo2 |
|
| FastViromeExplorer |
20180918 |
Bioinformatics |
Sapelo2 |
|
| FASTX-Toolkit |
0.0.14 |
Bioinformatics |
Sapelo2 |
|
| FFmpeg |
3.1.3, 3.4.1 |
Other |
Sapelo2 |
|
| FFTW |
3.3.4, 3.3.6, 3.3.7 |
Math Library |
Sapelo2 |
|
| FIAT |
1.6.0 |
Other |
Sapelo2 |
|
| fineSTRUCTURE |
2.1.3 |
Bioinformatics |
Sapelo2 |
|
| FLASH |
1.2.11 |
Bioinformatics |
Sapelo2 |
|
| FLTK |
1.3.4 |
Other |
Sapelo2 |
|
| Flye |
2.3.6 |
Bioinformatics |
Sapelo2 |
|
| FoX |
4.1.2 |
Library |
Sapelo2 |
|
| Freebayes |
1.2.0 |
Bioinformatics |
Sapelo2 |
|
| FriBidi |
1.0.1 |
Library |
Sapelo2 |
|
| FuzzyWuzzy |
0.17.0 |
Other |
Sapelo2 |
|
| fxtract |
2.3 |
Bioinformatics |
Sapelo2 |
|
| GAG |
2.0.1 |
Bioinformatics |
Sapelo2 |
|
| GAG |
2.0.1 |
Bioinformatics |
Teaching |
|
| GAMESS |
14Feb2018 |
Chemistry |
Sapelo2 |
|
| GapFiller |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
| GapFiller |
2.1.1 |
Bioinformatics |
Teaching |
|
| GAPIT |
20180524 |
Bioinformatics |
Sapelo2 |
|
| GATK |
3.4-0, 3.8-0, 3.8-1, 4.0.3.0, 4.0.11.0 |
Bioinformatics |
Sapelo2 |
|
| GATK |
3.8-0, 3.4-0 |
Bioinformatics |
Teaching |
|
| GAUSSIAN |
09 |
Chemistry |
Sapelo2 |
|
| GBlocks |
0.91b |
Bioinformatics |
Sapelo2 |
|
| GCTA |
1.26.0 |
Bioinformatics |
Sapelo2 |
|
| GD |
2.66 |
Bioinformatics |
Sapelo2 |
|
| GDAL |
2.1.0, 2.2.2 |
Library |
Sapelo2 |
|
| gdc-client |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
| Gdk-pixbuf |
2.36.0 |
Library |
Sapelo2 |
|
| GEM-library |
20130406-045632 |
Bioinformatics |
Sapelo2 |
|
| GeneMark.hmm.eukaryotic |
4.30 |
Bioinformatics |
Sapelo2 |
|
| GeneMarkES |
4.33 |
Bioinformatics |
Sapelo2 |
|
| GeneMarkES |
4.33 |
Bioinformatics |
Teaching |
|
| GeneMarkS-T |
4.33 |
Bioinformatics |
Sapelo2 |
|
| GeneMarkS |
4.30 |
Bioinformatics |
Sapelo2 |
|
| Genome |
Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 |
Bioinformatics |
Sapelo2 |
|
| GenomeTools |
1.5.9 |
Bioinformatics |
Sapelo2 |
|
| GEOS |
3.6.2 |
Library |
Sapelo2 |
|
| GET_HOMOLOGUES |
1.7.6 |
Bioinformatics |
Teaching |
|
| Gffcompare |
0.10.4 |
Bioinformatics |
Sapelo2 |
|
| gffread |
0.9.12 |
Bioinformatics |
Sapelo2 |
|
| GFlow |
0.1.7 |
Library |
Sapelo2 |
|
| Ghostscript |
9.20, 9.22 |
Other |
Sapelo2 |
|
| GL2PS |
1.4.0 |
Library |
Sapelo2 |
|
| GLib |
2.49.5, 2.53.5, 2.54.3 |
Library |
Sapelo2 |
|
| GLIMMER |
3.02b |
Bioinformatics |
Sapelo2 |
|
| GLIMMER |
3.02b |
Bioinformatics |
Teaching |
|
| GLPK |
4.63, 4.65 |
Programming |
Sapelo2 |
|
| GMAP-GSNAP |
2016-11-07, 2018-07-04 |
Bioinformatics |
Sapelo2 |
|
| GMP |
4.3.2, 6.1.1, 6.1.2 |
Library |
Sapelo2 |
|
| gnuplot |
5.0.5 |
Bioinformatics |
Sapelo2 |
|
| GObject-Introspection |
1.49.1, 1.54.1 |
Other |
Sapelo2 |
|
| grace |
5.1.25 |
Graphics |
Sapelo2 |
|
| GraftM |
0.11.1 |
Bioinformatics |
Sapelo2 |
|
| GraphicsMagicK |
1.3.28 |
Other |
Sapelo2 |
|
| Graphviz |
2.40.1 |
Other |
Sapelo2 |
|
| Gromacs |
2016.4, 2018.1 |
Chemistry |
Sapelo2 |
|
| GSL |
1.16, 2.1, 2.3. 2.4 |
Math Library |
Sapelo2 |
|
| GStreamer |
1.14.0 |
Bioinformatics |
Sapelo2 |
|
| GTK+ |
2.24.31 |
Library |
Sapelo2 |
|
| GTS |
0.7.6 |
Library |
Sapelo2 |
|
| Guile |
1.8.8 |
Other |
Sapelo2 |
|
| h5py |
2.7.1 |
Other |
Sapelo2 |
|
| HarfBuzz |
1.3.1, 1.7.5 |
Other |
Sapelo2 |
|
| HARP |
140925_103521 |
Bioinformatics |
Sapelo2 |
|
| Harvest |
1.1.2 |
Bioinformatics |
Teaching |
|
| HarvestTools |
1.2 |
Bioinformatics |
Sapelo2 |
|
| HH-suite |
3.0-beta.3 |
Bioinformatics |
Sapelo2 |
|
| HiC-Pro |
2.11.0-beta |
Bioinformatics |
Sapelo2 |
|
| hindex |
1.42 |
Bioinformatics |
Sapelo2 |
|
| HISAT2 |
2.1.0 |
Bioinformatics |
Sapelo2 |
|
| HISAT2 |
2.1.0 |
Bioinformatics |
Teaching |
|
| HMMER |
3.1b2 |
Bioinformatics |
Sapelo2 |
|
| Homer |
4.9.1, 4.10 |
Bioinformatics |
Sapelo2 |
|
| HPCGridRunner |
1.0.2 |
Tools |
Sapelo2 |
|
| htop |
2.0.1 |
Other |
Sapelo2 |
|
| HTSeq |
0.9.1 |
Bioinformatics |
Sapelo2 |
|
| HTSeq |
0.9.1 |
Bioinformatics |
Teaching |
|
| HTSlib |
1.3.2, 1.6, 1.8 |
Library |
Sapelo2 |
|
| HybPiper |
1.3.1 |
Bioinformatics |
Sapelo2 |
|
| Hypre |
2.11.1 |
Library |
Sapelo2 |
|
| IGV |
2.4.4 |
Bioinformatics |
Sapelo2 |
|
| IGVTools |
2.3.98 |
Bioinformatics |
Sapelo2 |
|
| ImageMagick |
7.0.5 |
Other |
Sapelo2 |
|
| Infernal |
1.1.2 |
Bioinformatics |
Sapelo2 |
|
| iprscan (InterProScan) |
5.29-68.0, 5.31-70.0 |
Bioinformatics |
Sapelo2 |
|
| ipyrad |
0.7.24 |
Bioinformatics |
Sapelo2 |
|
| Ipyrad |
0.7.24 |
Bioinformatics |
Teaching |
|
| IPython |
5.3.0, 6.2.1 |
Other |
Sapelo2 |
|
| IQ-Tree |
1.5.5, 1.6.5 |
Bioinformatics |
Sapelo2 |
|
| IRMA |
0.6.7 |
Bioinformatics |
Sapelo2 |
|
| ITSTool |
2.0.4 |
Utility |
Sapelo2 |
|
| JAGS |
4.3.0 |
Statistics |
Sapelo2 |
|
| JasPer |
1.900.1, 2.0.12 |
Other |
Sapelo2 |
|
| Java |
1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 |
Programming |
Sapelo2 |
|
| Java |
1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 |
Programming |
Teaching |
|
| Jellyfish |
2.2.6 |
Bioinformatics |
Sapelo2 |
|
| JModelTest |
2.1.10 |
Bioinformatics |
Sapelo2 |
|
| Juicer |
1.5.6 |
Bioinformatics |
Sapelo2 |
|
| JUnit |
4.12 |
Other |
Sapelo2 |
|
| Kaiju |
1.6.2 |
Bioinformatics |
Sapelo2 |
|
| kallisto |
0.43.1 |
Bioinformatics |
Sapelo2 |
|
| KAT |
2.4.1 |
Bioinformatics |
Sapelo2 |
|
| keras |
2.0.6, 2.2.2 |
Other |
Sapelo2 |
|
| KmerGenie |
1.7044 |
Bioinformatics |
Sapelo2 |
|
| KmerGenie |
1.7044 |
Bioinformatics |
Teaching |
|
| KronaTools |
2.7 |
Bioinformatics |
Sapelo2 |
|
| LAME |
3.100 |
Other |
Sapelo2 |
|
| LAPACK |
3.6.1 |
Other |
Sapelo2 |
|
| LAST |
956 |
Bioinformatics |
Sapelo2 |
|
| LASTZ |
1.04.00 |
Bioinformatics |
Sapelo2 |
|
| LDhat |
2.2 |
Bioinformatics |
Sapelo2 |
|
| LDhelmet |
1.10 |
Bioinformatics |
Sapelo2 |
|
| LibStatGen |
1.0.14 |
Bioinformatics |
Sapelo2 |
|
| LibTIFF |
4.0.6, 4.0.8, 4.0.9 |
Library |
Sapelo2 |
|
| LittleCMS |
2.8 |
Other |
Sapelo2 |
|
| LLVM |
3.8.1, 4.0.0, 5.0.1, 6.0.0 |
Library |
Sapelo2 |
|
| LMDB |
0.9.22 |
Bioinformatics |
Sapelo2 |
|
| LoFreq |
2.1.2 |
Bioinformatics |
Sapelo2 |
|
| Log-Log4perl |
1.49 |
Other |
Sapelo2 |
|
| LongRanger |
2.2.2 |
Bioinformatics |
Sapelo2 |
|
| lrslib |
6.2 |
Other |
Sapelo2 |
|
| LS-DYNA |
10.123355 |
Engineering |
Sapelo2 |
|
| LS-PrePost |
4.5 |
Engineering |
Sapelo2 |
|
| LTR_retriever |
1.6 |
Bioinformatics |
Sapelo2 |
|
| LUMPY |
0.2.13 |
Bioinformatics |
Sapelo2 |
|
| LZO |
2.10 |
Bioinformatics |
Sapelo2 |
|
| M4 |
1.4.16, 1.4.17, 1.4.17 |
Other |
Sapelo2 |
|
| MACS2 |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
| MAFFT |
7.273, 7.313, 7.397 |
Bioinformatics |
Sapelo2 |
|
| MAFFT |
7.130, 7.273, 7.313 |
Bioinformatics |
Teaching |
|
| Magma-GPU |
2.3.0 |
Other |
Sapelo2 |
|
| Magma |
2.22-9 |
Other |
Sapelo2 |
|
| mahotas |
1.4.3 |
Bioinformatics |
Sapelo2 |
|
| Maker |
2.31.9 |
Bioinformatics |
Sapelo2 |
|
| Maker |
2.31.9 |
Bioinformatics |
Teaching |
|
| Mako |
1.0.4, 1.0.7 |
Other |
Sapelo2 |
|
| MARVEL |
20180918 |
Bioinformatics |
Sapelo2 |
|
| Mash |
2.1 |
Bioinformatics |
Sapelo2 |
|
| MaSuRCA |
3.2.2 |
Bioinformatics |
Sapelo2 |
|
| Matlab |
R2017b |
Programming |
Sapelo2 |
|
| Mauve |
2015-02-13 |
Bioinformatics |
Sapelo2 |
|
| Maven |
3.5.2 |
Bioinformatics |
Sapelo2 |
|
| MCL |
14.137 |
Bioinformatics |
Sapelo2 |
|
| MCScanX |
0.8 |
Bioinformatics |
Sapelo2 |
|
| MEGA |
7.0.26-1 |
Bioinformatics |
Sapelo2 |
|
| MEGAHIT |
1.1.1, 1.1.3 |
Bioinformatics |
Sapelo2 |
|
| MEME |
4.11.0, 5.0.0_1 |
Bioinformatics |
Sapelo2 |
|
| Meraculous |
2.2.5 |
Bioinformatics |
Sapelo2 |
|
| Mercurial |
4.4.2 |
Other |
Sapelo2 |
|
| Mesa |
12.0.2, 17.3.6 |
Other |
Sapelo2 |
|
| MET |
7.0 |
Other |
Sapelo2 |
|
| methylpy |
1.2.9, 1.3.2 |
Bioinformatics |
Sapelo2 |
|
| METIS |
5.1.0 |
Other |
Sapelo2 |
|
| minced |
0.2.1 |
Bioinformatics |
Sapelo2 |
|
| Miniconda3 |
4.4.10 |
Other |
Sapelo2 |
|
| Minimap2 |
2.10, 2.13 |
Bioinformatics |
Sapelo2 |
|
| mirdeep-p |
1.3 |
Bioinformatics |
Sapelo2 |
|
| miRDeep2 |
0.0.8 |
Bioinformatics |
Sapelo2 |
|
| MITE-Hunter |
11-2011 |
Bioinformatics |
Sapelo2 |
|
| Mothur |
1.39.5 |
Bioinformatics |
Sapelo2 |
|
| motif |
2.3.5, 2.3.8 |
Graphics |
Sapelo2 |
|
| MPJ-Express |
0.44 |
Library |
Sapelo2 |
|
| MrBayes |
3.2.6 |
Bioinformatics |
Sapelo2 |
|
| MREPS |
1.0.5 |
Bioinformatics |
Sapelo2 |
|
| MultiQC |
1.5 |
Bioinformatics |
Sapelo2 |
|
| MUMmer |
3.23, 4.0.0beta2 |
Bioinformatics |
Sapelo2 |
|
| MUMmer |
3.23 |
Bioinformatics |
Teaching |
|
| MUSCLE |
3.8 |
Bioinformatics |
Sapelo2 |
|
| MuTect |
1.1.7 |
Bioinformatics |
Sapelo2 |
|
| muver |
0.1.0 |
Bioinformatics |
Sapelo2 |
|
| NAMD |
2.12 |
Chemistry |
Sapelo2 |
|
| Nanocorr |
5.9 |
Bioinformatics |
Sapelo2 |
|
| NASM |
2.11, 2.12, 2.13 |
Other |
Sapelo2 |
|
| NCL |
2.1.18, 6.4.0 |
Bioinformatics |
Sapelo2 |
|
| NeEstimator |
2.1 |
Bioinformatics |
Sapelo2 |
|
| Newbler |
3.0 |
Bioinformatics |
Sapelo2 |
|
| NextGenMap |
0.5.5 |
Bioinformatics |
Sapelo2 |
|
| ngmlr |
0.2.6-beta |
Bioinformatics |
Sapelo2 |
|
| NGS |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
| nhPhyML |
20180515 |
Bioinformatics |
Sapelo2 |
|
| NiBabel |
2.2.1 |
Other |
Sapelo2 |
|
| nistats |
0.0.1a0 |
Other |
Sapelo2 |
|
| NLopt |
2.4.2 |
Library |
Sapelo2 |
|
| Nseg |
20180530 |
Bioinformatics |
Sapelo2 |
|
| NucleoATAC |
0.3.4 |
Bioinformatics |
Sapelo2 |
|
| Oases |
0.2.08, 0.2.09 |
Bioinformatics |
Sapelo2 |
|
| OCaml |
4.01.0, 4.02.3 |
Programming |
Sapelo2 |
|
| OpenBUGS |
3.2.3 |
Statistics |
Sapelo2 |
|
| OpenCV |
3.4.1 |
Other |
Sapelo2 |
|
| OpenJPEG |
2.3.0 |
Other |
Sapelo2 |
|
| OpenSlide |
3.4.1 |
Other |
Sapelo2 |
|
| ORCA |
3.0.3, 4.0.0.2, 4.0.1.2 |
Chemistry |
Sapelo2 |
|
| OrfM |
0.6.1 |
Bioinformatics |
Sapelo2 |
|
| ORGanelle_ASeMbler |
0.2.03 |
Bioinformatics |
Sapelo2 |
|
| ORGASM |
0.2.03 |
Bioinformatics |
Sapelo2 |
|
| ORP |
2.0.0 |
Bioinformatics |
Sapelo2 |
|
| OrthoFinder |
2.1.2 |
Bioinformatics |
Sapelo2 |
|
| OrthoFinder |
2.1.2 |
Bioinformatics |
Teaching |
|
| PAGIT |
1.64 |
Bioinformatics |
Sapelo2 |
|
| PAML |
4.9h |
Bioinformatics |
Sapelo2 |
|
| PAML |
4.9h |
Bioinformatics |
Teaching |
|
| PANDAseq |
2.5 |
Bioinformatics |
Sapelo2 |
|
| Pango |
1.40.3, 1.41.1 |
Library |
Sapelo2 |
|
| Parliament2 |
0.1.8, hgsc |
Bioinformatics |
Sapelo2 |
|
| Parsnp |
1.2 |
Bioinformatics |
Sapelo2 |
|
| PartitionFinder |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
| PASA |
2.3.3 |
Bioinformatics |
Sapelo2 |
|
| PASTA |
1.8.2 |
Bioinformatics |
Sapelo2 |
|
| PAUP |
4a162_centos64_intel |
Bioinformatics |
Sapelo2 |
|
| Pb-assembly |
0.0.2 |
Bioinformatics |
Sapelo2 |
|
| pbh5tools |
0.8.0 |
Bioinformatics |
Sapelo2 |
|
| PBLAT |
2.0.0 |
Bioinformatics |
Sapelo2 |
|
| PBSuite |
15.8.24 |
Bioinformatics |
Sapelo2 |
|
| PCRE |
8.38, 8.39, 8.41 |
Library |
Sapelo2 |
|
| PEAR |
0.9.8 |
Bioinformatics |
Sapelo2 |
|
| Perl |
5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 |
Programming |
Sapelo2 |
|
| Perl |
5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 |
Programming |
Teaching |
|
| PETSc |
3.8.4 |
Math Library |
Sapelo2 |
|
| PGDSpider |
2.1.1.5 |
Bioinformatics |
Sapelo2 |
|
| phaser |
1.2.0 |
Bioinformatics |
Sapelo2 |
|
| PhaseTank |
1.0 |
Bioinformatics |
Sapelo2 |
|
| Phobius |
1.01 |
Bioinformatics |
Sapelo2 |
|
| Phred/Phrap/Conced |
Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 |
Bioinformatics |
Sapelo2 |
|
| Phycas |
2.2.0 |
Bioinformatics |
Sapelo2 |
|
| PHYLIP |
3.697 |
Bioinformatics |
Sapelo2 |
|
| PhyloBayes-MPI |
20161021 |
Bioinformatics |
Sapelo2 |
|
| PhyloCSF |
20180919 |
Bioinformatics |
Sapelo2 |
|
| Phyluce |
1.6.1 |
Bioinformatics |
Sapelo2 |
|
| PhyML |
3.3.20170530 |
Bioinformatics |
Sapelo2 |
|
| picard |
2.16.0 |
Bioinformatics |
Sapelo2 |
|
| Picard |
2.16.0 |
Bioinformatics |
Teaching |
|
| PICRUSt |
1.1.3 |
Bioinformatics |
Sapelo2 |
|
| pigz |
2.3.3 |
Other |
Sapelo2 |
|
| PIL |
1.1.7 |
Library |
Sapelo2 |
|
| PILER |
2.5 |
Bioinformatics |
Sapelo2 |
|
| Pilon |
1.22 |
Bioinformatics |
Sapelo2 |
|
| Pilon |
1.22 |
Bioinformatics |
Teaching |
|
| PLINK |
1.07, 1.9b |
Bioinformatics |
Sapelo2 |
|
| Plmc |
0.1 |
Bioinformatics |
Sapelo2 |
|
| PoSSuMsearch |
2.0 |
Bioinformatics |
Sapelo2 |
|
| PRANK |
170427 |
Bioinformatics |
Sapelo2 |
|
| Primer3 |
2.3.7 |
Bioinformatics |
Sapelo2 |
|
| PRINSEQ |
0.20.4 |
Bioinformatics |
Sapelo2 |
|
| Prodigal |
2.6.3 |
Bioinformatics |
Sapelo2 |
|
| PROJ |
4.9.2 |
Other |
Sapelo2 |
|
| Prokka |
1.13 |
Bioinformatics |
Sapelo2 |
|
| Prokka |
1.13 |
Bioinformatics |
Teaching |
|
| proovread |
2.14.1 |
Bioinformatics |
Sapelo2 |
|
| Proovread |
2.14.1 |
Bioinformatics |
Teaching |
|
| protobuf |
3.3.0, 3.4.0 |
Other |
Sapelo2 |
|
| pybedtools |
0.7.10 |
Bioinformatics |
Sapelo2 |
|
| pyDNA |
0.1 |
Bioinformatics |
Sapelo2 |
|
| pydub |
0.22.1 |
Other |
Sapelo2 |
|
| PyMOL |
2.3.0a0 |
Graphics |
Sapelo2 |
|
| PyPy |
6.0.0 (2.7.14) |
Programming |
Sapelo2 |
|
| Pysam |
0.10.0, 0.13 |
Bioinformatics |
Sapelo2 |
|
| Python |
2.7.12, 2.7.14, 3.4.3, 3.5.1 |
Programming |
Sapelo2 |
|
| Python |
3.6.4, 3.5.2, 2.7.14, 2.7.12 |
Programming |
Teaching |
|
| PyTorch |
0.3.1 |
Other |
Sapelo2 |
|
| QIIME2 |
2018.2, 2018.4, 2018.6, 2018.8 |
Bioinformatics |
Sapelo2 |
|
| QIIME2 |
2018.4, 2018.6, 2018.8 |
Bioinformatics |
Teaching |
|
| QIIME |
1.9.1 |
Bioinformatics |
Sapelo2 |
|
| QTLcartographer |
1.17j |
Bioinformatics |
Sapelo2 |
|
| Qualimap2 |
2.2.1 |
Bioinformatics |
Sapelo2 |
|
| Quantum Espresso |
6.2.0 |
Chemistry |
Sapelo2 |
|
| QUAST |
4.2, 4.6.1, 4.6.3, 5.0.0 |
Bioinformatics |
Sapelo2 |
|
| R |
3.4.4 |
Statistics |
Sapelo2 |
|
| R |
3.4.4 |
Statistics |
Teaching |
|
| racon |
20180406 |
Bioinformatics |
Sapelo2 |
|
| randfold |
2.0.1 |
Bioinformatics |
Sapelo2 |
|
| RATT |
20180710 |
Bioinformatics |
Sapelo2 |
|
| RAxML-NG |
0.7.0 |
Bioinformatics |
Sapelo2 |
|
| RAxML |
8.2.4, 8.2.11 |
Bioinformatics |
Sapelo2 |
|
| RAxML |
8.2.11 |
Bioinformatics |
Teaching |
|
| Ray |
2.3.1 |
Bioinformatics |
Sapelo2 |
|
| Rcorrector |
1.0.2 |
Bioinformatics |
Sapelo2 |
|
| REAPR |
1.0.18 |
Bioinformatics |
Sapelo2 |
|
| RECON |
1.08 |
Bioinformatics |
Sapelo2 |
|
| RepeatMasker |
4.0.5, 4.0.7 |
Bioinformatics |
Sapelo2 |
|
| RepeatMasker |
4.0.7 |
Bioinformatics |
Teaching |
|
| Repeatmodeler |
1.0.11 |
Bioinformatics |
Sapelo2 |
|
| RepeatModeler |
1.0.11 |
Bioinformatics |
Teaching |
|
| RepeatScout |
1.05 |
Bioinformatics |
Sapelo2 |
|
| RepeatScout |
1.05 |
Bioinformatics |
Teaching |
|
| REPET |
2.5 |
Bioinformatics |
Sapelo2 |
|
| rjags |
4.6 |
Other |
Sapelo2 |
|
| RMBlast |
2.6.0 |
Bioinformatics |
Sapelo2 |
|
| Rmpi |
0.6-6 |
Programming |
Sapelo2 |
|
| RNAmmer |
1.2 |
Bioinformatics |
Sapelo2 |
|
| Roary |
3.12.0 |
Bioinformatics |
Sapelo2 |
|
| Rosetta |
2017.45.59812 |
Chemistry |
Sapelo2 |
|
| RSEM |
1.3.0, 1.3.1 |
Bioinformatics |
Sapelo2 |
|
| Ruby |
2.5.0 |
Programming |
Sapelo2 |
|
| runBNG |
1.03 |
Bioinformatics |
Sapelo2 |
|
| Sage |
8.0 |
Other |
Sapelo2 |
|
| Salmon |
0.8.2 |
Bioinformatics |
Sapelo2 |
|
| SALSA |
2.0 |
Bioinformatics |
Sapelo2 |
|
| SAMtools |
0.1.19, 1.1, 1.3.1, 1.6 |
Bioinformatics |
Sapelo2 |
|
| SAMtools |
1.6, 1.3.1, 0.1.19 |
Bioinformatics |
Teaching |
|
| sbt |
1.1.1 |
Programming |
Sapelo2 |
|
| scala |
2.12.4 |
Programming |
Sapelo2 |
|
| scikit-image |
0.13.1, 0.14.0 |
Other |
Sapelo2 |
|
| SCons |
2.5.0 |
Other |
Sapelo2 |
|
| SCOTCH |
6.0.4 |
Other |
Sapelo2 |
|
| seaview |
4.7 |
Bioinformatics |
Sapelo2 |
|
| Seq-Gen |
1.3.4 |
Bioinformatics |
Sapelo2 |
|
| seqtk |
1.2 |
Bioinformatics |
Sapelo2 |
|
| shapeit |
v2.r904 |
Bioinformatics |
Sapelo2 |
|
| ShortStack |
3.8.5 |
Bioinformatics |
Sapelo2 |
|
| SICER |
1.1 |
Bioinformatics |
Sapelo2 |
|
| SignalP |
4.1f |
Bioinformatics |
Sapelo2 |
|
| Silix |
1.2.9 |
Bioinformatics |
Sapelo2 |
|
| SINE_Scan |
1.1.1 |
Bioinformatics |
Sapelo2 |
|
| slda |
0.1.6 |
Other |
Sapelo2 |
|
| smoke |
4.5 |
Other |
Sapelo2 |
|
| SMRTLINK |
5.1.0.26412, 6.0.0.47841 |
Bioinformatics |
Sapelo2 |
|
| SMRTLINK |
5.0.1.9585, 5.1.0.26412 |
Bioinformatics |
Teaching |
|
| SNAP-Zoe |
20060728 |
Bioinformatics |
Sapelo2 |
|
| SNAP-Zoe |
20060728 |
Bioinformatics |
Teaching |
|
| Sniffles |
1.0.8 |
Bioinformatics |
Sapelo2 |
|
| SNP-ML |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
| snpEff |
4.3t |
Bioinformatics |
Sapelo2 |
|
| SnpEff |
4.3t |
Bioinformatics |
Teaching |
|
| SNPhylo |
20160204 |
Bioinformatics |
Sapelo2 |
|
| SOAPaligner |
2.21 |
Bioinformatics |
Sapelo2 |
|
| SOAPdenovo2 |
r240 |
Bioinformatics |
Sapelo2 |
|
| SOAPdenovo2 |
r240 |
Bioinformatics |
Teaching |
|
| SOP-GPU |
20180404 |
Bioinformatics |
Sapelo2 |
|
| SortMeRNA |
2.1 |
Bioinformatics |
Sapelo2 |
|
| SPAdes |
3.11.1, 3.12.0 |
Bioinformatics |
Sapelo2 |
|
| SPAdes |
3.11.1 |
Bioinformatics |
Teaching |
|
| spams |
2.6.1 |
Other |
Sapelo2 |
|
| Spark |
2.2.1 |
Other |
Sapelo2 |
|
| SPM |
12 |
Other |
Sapelo2 |
|
| SRAToolKit |
2.8.2-1, 2.9.1 |
Bioinformatics |
Sapelo2 |
|
| SSAHA2 |
2.5.5 |
Bioinformatics |
Sapelo2 |
|
| SSPACE-longread |
1-1 |
Bioinformatics |
Teaching |
|
| SSPACE-STANDARD |
3.0 |
Bioinformatics |
Teaching |
|
| SSPACE |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
| Stacks |
1.48, 2.2 |
Bioinformatics |
Sapelo2 |
|
| Stacks |
2.0, 1.48 |
Bioinformatics |
Teaching |
|
| STAR-Fusion |
1.5.0 |
Bioinformatics |
Sapelo2 |
|
| STAR |
2.5.3a, 2.6.0c, 2.6.1c |
Bioinformatics |
Sapelo2 |
|
| STAR |
2.5.3a, 2.6.0c |
Bioinformatics |
Teaching |
|
| StrAuto |
1.0 |
Bioinformatics |
Sapelo2 |
|
| StringTie |
1.3.3, 1.3.4d |
Bioinformatics |
Sapelo2 |
|
| StringTie |
1.3.3, 1.3.4d |
Bioinformatics |
Teaching |
|
| Structure |
2.3.4 |
Bioinformatics |
Sapelo2 |
|
| Subread |
1.6.2 |
Bioinformatics |
Sapelo2 |
|
| SUNTANS |
20180305 |
Other |
Sapelo2 |
|
| Supernova |
2.0.1, 2.1.1 |
Bioinformatics |
Sapelo2 |
|
| SVDetect |
0.7 |
Bioinformatics |
Sapelo2 |
|
| SWIG |
3.0.12 |
Bioinformatics |
Sapelo2 |
|
| TASSEL |
5.2.44 |
Bioinformatics |
Sapelo2 |
|
| Tbl2asn |
04172018 |
Bioinformatics |
Sapelo2 |
|
| TCSF_IMRA |
1.3 |
Bioinformatics |
Sapelo2 |
|
| TensorFlow-models |
20180620 |
Other |
Sapelo2 |
|
| TensorFlow |
1.8.0, 1.10.1 |
Other |
Sapelo2 |
|
| Theano |
0.9.0 |
Other |
Sapelo2 |
|
| TMHMM |
2.0c |
Bioinformatics |
Sapelo2 |
|
| Tophat |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
| TopHat |
2.1.1 |
Bioinformatics |
Teaching |
|
| TPP |
5.1.0 |
Bioinformatics |
Sapelo2 |
|
| TransDecoder |
2.1.0 |
Bioinformatics |
Sapelo2 |
|
| TrimAl |
1.4.1 |
Bioinformatics |
Sapelo2 |
|
| Trimmomatic |
0.36 |
Bioinformatics |
Sapelo2 |
|
| Trimmomatic |
0.36 |
Bioinformatics |
Teaching |
|
| Trim_Galore |
0.4.5 |
Bioinformatics |
Sapelo2 |
|
| Trinity |
r20140717, 2.5.1, 2.6.6 |
Bioinformatics |
Sapelo2 |
|
| Trinity |
2.6.6 |
Bioinformatics |
Teaching |
|
| Trinotate |
3.1.1 |
Bioinformatics |
Sapelo2 |
|
| TRNAscan-SE |
2.0.0 |
Bioinformatics |
Sapelo2 |
|
| UCLUST |
1.2.22q |
Bioinformatics |
Sapelo2 |
|
| ucsc |
359 |
Bioinformatics |
Sapelo2 |
|
| UPP |
3.2 |
Other |
Sapelo2 |
|
| USEARCH |
10.0.240 |
Bioinformatics |
Sapelo2 |
|
| VarScan |
2.4.2 |
Bioinformatics |
Sapelo2 |
|
| VCF-kit |
0.1.6 |
Bioinformatics |
Sapelo2 |
|
| vcf2diploid |
0.2.6a |
Chemistry |
Sapelo2 |
|
| vcf2phylip |
1.5 |
Bioinformatics |
Sapelo2 |
|
| vcflib |
20180410 |
Bioinformatics |
Sapelo2 |
|
| VCFtools |
0.1.15 |
Bioinformatics |
Sapelo2 |
|
| VCFtools |
0.1.15 |
Bioinformatics |
Teaching |
|
| Velvet |
1.2.10 |
Bioinformatics |
Sapelo2 |
|
| Velvet |
1.2.10 |
Bioinformatics |
Teaching |
|
| ViennaRNA |
2.4.3, 2.4.6 |
Bioinformatics |
Sapelo2 |
|
| Vmatch |
2.3.0 |
Bioinformatics |
Sapelo2 |
|
| VSEARCH |
2.8.1 |
Bioinformatics |
Sapelo2 |
|
| WGS |
8.3rc2 |
Bioinformatics |
Sapelo2 |
|
| WPS |
3.8 |
Other |
Sapelo2 |
|
| WRF-Chem |
3.6.1, 3.8.0 |
Other |
Sapelo2 |
|
| WRF-Fire |
20170221 |
Other |
Sapelo2 |
|
| WRF |
3.6.1, 3.8.0 |
Other |
Sapelo2 |
|
| WU Blast |
2.2.6 |
Bioinformatics |
Sapelo2 |
|
| xforms |
1.2.4 |
Graphics |
Sapelo2 |
|
| YASRA |
2.33 |
Bioinformatics |
Sapelo2 |
|
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