Name
|
Version
|
Category
|
Cluster
|
Top
|
4p |
1.0 |
Bioinformatics |
Sapelo |
|
4p |
1.0 |
Bioinformatics |
Sapelo2 |
|
[[|]] |
|
[[:Category:|Category:]] |
Category: |
Category:
|
ABySS |
2.0.2 |
Bioinformatics |
Sapelo |
|
ABySS |
1.9.0, 2.0.2, 2.1.0 |
Bioinformatics |
Sapelo2 |
|
AFNI |
17.3.05 |
Other |
Sapelo2 |
|
AGE |
0.4 |
Bioinformatics |
Sapelo |
|
AMBER |
14 |
Chemistry |
Sapelo |
|
AMBER |
14 |
Chemistry |
Sapelo2 |
|
AMOS |
3.1.0 |
Bioinformatics |
Sapelo2 |
|
ANI |
2.0 |
Bioinformatics |
Sapelo |
|
ANNOgesic |
0.6.17 |
Bioinformatics |
Sapelo |
|
ANSYS |
16.2 |
Engineering |
Sapelo |
|
ARC |
1.1.4-beta |
Bioinformatics |
Sapelo |
|
ART |
20160605 |
Bioinformatics |
Sapelo |
|
ART |
20160605 |
Bioinformatics |
Sapelo2 |
|
ASTRAL |
5.6.1 |
Bioinformatics |
Sapelo2 |
|
AStalavista |
3.2 |
Bioinformatics |
Sapelo |
|
AUGUSTUS |
3.2.3 |
Bioinformatics |
Sapelo2 |
|
AUGUSTUS |
3.2.3 |
Bioinformatics |
Teaching |
|
aeneas |
1.7.3 |
Other |
Sapelo |
|
AlignGraph |
20180709 |
Bioinformatics |
Sapelo2 |
|
AlleleSeq_pipeline |
1.2a |
Chemistry |
Sapelo2 |
|
Allmaps |
0.6.6 |
Bioinformatics |
Sapelo |
|
amos |
3.1.0 |
Bioinformatics |
Sapelo |
|
Anaconda2 |
4.2.0, 4.3.0, 4.4.0 |
Programming |
Sapelo |
|
Anaconda2 |
5.0.1 |
Programming |
Sapelo2 |
|
Anaconda3 |
4.2.0, 4.3.0, 5.0.0 |
Programming |
Sapelo |
|
Anaconda3 |
5.0.1 |
Programming |
Sapelo2 |
|
Anaconda |
2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 |
Programming |
Sapelo |
|
annovar |
2017Jul16 |
Bioinformatics |
sapelo2 |
|
apache-ant |
1.9.6 |
Other |
Sapelo |
|
Aragorn |
1.2.38 |
Bioinformatics |
Sapelo2 |
|
Arlequin |
3.5.2.2 |
Bioinformatics |
Sapelo2 |
|
Artemis |
17.0.1 |
Bioinformatics |
Sapelo2 |
|
Artemis |
17.0.1 |
Bioinformatics |
Teaching |
|
augustus |
3.2.3 |
Bioinformatics |
Sapelo |
|
BAGEL |
2016.12.14, 2017.02.13 |
Chemistry |
Sapelo |
|
BBMap |
35.82 |
Bioinformatics |
Sapelo |
|
BBMap |
37.67 |
Bioinformatics |
Sapelo2 |
|
BCFtools |
1.3.1, 1.6, 1.8 |
Bioinformatics |
Sapelo2 |
|
BCFtools |
1.8, 1.6, 1.3.1 |
Bioinformatics |
Teaching |
|
BEAST |
2.4.1 |
Bioinformatics |
Sapelo |
|
BEDOPS |
2.4.30 |
Bioinformatics |
Sapelo2 |
|
BEDTools |
2.24.0, 2.25.0 2.26.0 |
Bioinformatics |
Sapelo |
|
BEDTools |
2.26.0 |
Bioinformatics |
Sapelo2 |
|
BEDTools |
2.26.0 |
Bioinformatics |
Teaching |
|
BEDops |
2.4.14 |
Bioinformatics |
Sapelo |
|
BEST |
2.3.1 |
Bioinformatics |
Sapelo |
|
BLAST+ |
2.6.0 |
Bioinformatics |
Teaching |
|
BLAST |
2.2.26 |
Bioinformatics |
Sapelo2 |
|
BLAST |
2.2.26 |
Bioinformatics |
Teaching |
|
BLAT |
3.4, 3.5 |
Bioinformatics |
Sapelo2 |
|
BP&P |
4.0 |
Bioinformatics |
Sapelo |
|
BS |
2.1.1 |
Bioinformatics |
Sapelo |
|
BUSCO |
3.0.2 |
Bioinformatics |
Sapelo |
|
BWA |
0.7.15, 0.7.17 |
Bioinformatics |
Sapelo2 |
|
BWA |
0.7.17, 0.7.15 |
Bioinformatics |
Teaching |
|
BaitsTools |
1.0 |
Bioinformatics |
Sapelo |
|
bam-readcount |
0.8.0 |
Bioinformatics |
Sapelo |
|
BamTools |
2.4.1 |
Bioinformatics |
Sapelo2 |
|
Bamtools |
2.4.0 |
Bioinformatics |
Sapelo |
|
Barrnap |
0.9 |
Bioinformatics |
Sapelo2 |
|
basespace-cli |
0.8.10 |
Bioinformatics |
Sapelo |
|
BayesAss |
3.0.4 |
Bioinformatics |
Sapelo2 |
|
Bazel |
0.4.5 |
Other |
Sapelo |
|
Bazel |
0.8.1, 0.11.1 |
Other |
Sapelo2 |
|
bcftools |
1.6 |
Bioinformatics |
Sapelo |
|
bcl2fastq |
2.17.1.14 |
Bioinformatics |
Sapelo |
|
bcl2fastq |
2.20.0 |
Bioinformatics |
Sapelo2 |
|
Beast |
2.4.8pre |
Bioinformatics |
Sapelo2 |
|
BiBench |
0.2 |
Bioinformatics |
Sapelo |
|
BioPerl |
1.6.923 |
Bioinformatics |
Sapelo |
|
BioPerl |
1.7.1 |
Bioinformatics |
Sapelo2 |
|
BioPerl |
1.7.1 |
Bioinformatics |
Teaching |
|
BioPython |
1.66 |
Bioinformatics |
Sapelo |
|
BioPython |
1.68 |
Bioinformatics |
Sapelo2 |
|
bioawk |
1.0 |
Bioinformatics |
Sapelo |
|
BionanoSolve |
3.2.1-04122018 |
Bioinformatics |
Sapelo2 |
|
Biopython |
1.68 |
Bioinformatics |
Teaching |
|
Bismark |
0.16.3 |
Bioinformatics |
Sapelo |
|
Bison |
2.7, 3.0.2, 3.0.4 |
Other |
Sapelo |
|
Blat |
36 |
Bioinformatics |
Sapelo |
|
Boost |
1.47.0, 1.57.0, 1.59.0 |
Library |
Sapelo |
|
Boost |
1.54.0, 1.61.0, 1.63.0, 1.65.1 |
Library |
Sapelo2 |
|
bowtie2 |
2.2.4 |
Bioinformatics |
Sapelo |
|
bowtie2 |
2.2.3, 2.3.3, 2.3.4.1 |
Bioinformatics |
Sapelo2 |
|
Bowtie2 |
2.3.4.1, 2.3.3, 2.2.3 |
Bioinformatics |
Teaching |
|
bowtie |
1.1.1 |
Bioinformatics |
Sapelo |
|
Bowtie |
1.2.2 |
Bioinformatics |
Sapelo2 |
|
braker |
2.0.5 |
Bioinformatics |
Sapelo2 |
|
BreakDancer |
1.4.5-foss-2016b |
Bioinformatics |
Sapelo2 |
|
breakdancer |
1.1.2_2013_03_08 |
Bioinformatics |
Sapelo |
|
Burrows-Wheeler |
0.7.10, 0.7.15 |
Bioinformatics |
Sapelo |
|
busco |
3.0.2, 2.0 |
Bioinformatics |
Sapelo2 |
|
CAP-miRSeq |
05/20184 |
Bioinformatics |
Sapelo2 |
|
CAP3 |
03092015 |
Bioinformatics |
Sapelo2 |
|
CD-HIT |
4.6.8 |
Bioinformatics |
Sapelo2 |
|
CDNA_Cupcake |
3.9 |
Bioinformatics |
Sapelo |
|
CENSOR |
4.2.29 |
Bioinformatics |
Sapelo2 |
|
CFOUR |
1.2, 2.00-beta |
Chemistry |
Sapelo |
|
CGAT |
0.2.4 |
Bioinformatics |
Sapelo |
|
CGmapTools |
0.0.3b |
Bioinformatics |
Sapelo |
|
CIRCexplorer2 |
2.2.3 |
Bioinformatics |
Sapelo |
|
CMake |
3.0.0, 3.4.3, 3.5.2, 3.6.1, 3.6.2, 3.7.2, 3.8.0, 3.9.1, 3.9.5, 3.10.2 |
Other |
Sapelo2 |
|
CNVnator |
0.3.3 |
Bioinformatics |
Sapelo |
|
CNVnator |
0.3.3 |
Bioinformatics |
Sapelo2 |
|
CONSEL |
0.20 |
Bioinformatics |
Sapelo |
|
CPLEX |
12.6.3 |
Engineering |
Sapelo |
|
CPLEX |
12.6.3 |
Engineering |
Sapelo2 |
|
CUDA |
5.0.35, 6.5.14, 7.5.18, 8.0.61 |
Programming |
Sapelo |
|
CUDA |
7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176 |
Programming |
Sapelo2 |
|
cURL |
7.49.1 |
Other |
Sapelo2 |
|
Caffe |
12.04.2015 |
Other |
Sapelo |
|
Caffe |
04082018 |
Other |
Sapelo2 |
|
Cairo |
1.10.0 |
Bioinformatics |
Sapelo |
|
cairo |
1.14.6, 1.14.10, 1.14.12 |
Bioinformatics |
Sapelo2 |
|
canu |
1.4 |
Bioinformatics |
Sapelo |
|
canu |
1.7 |
Bioinformatics |
Sapelo2 |
|
Canu |
1.7, 1.6, 1.5, 1.4 |
Bioinformatics |
Teaching |
|
cap3 |
03/09/2015 |
Bioinformatics |
Sapelo |
|
|
|
Category: |
Category: |
[[]]
|
cdhit |
4.6.7 |
Bioinformatics |
Sapelo |
|
CellProfiler |
2.2.0 |
Bioinformatics |
Sapelo |
|
censor |
4.2.29 |
Bioinformatics |
Sapelo |
|
Centrifuge |
2.3.2 |
Bioinformatics |
Sapelo |
|
Check |
0.10.0 |
Programming |
Sapelo |
|
CheckM |
1.0.5 |
Bioinformatics |
Sapelo |
|
Chimera |
1.13 |
Bioinformatics |
Sapelo2 |
|
Chromosomer |
0.1.4a |
Bioinformatics |
Sapelo |
|
circlator |
1.4.1 |
Bioinformatics |
Sapelo |
|
circlator |
1.5.3 |
Bioinformatics |
Sapelo2 |
|
circos |
0.69 |
Bioinformatics |
Sapelo |
|
Circos |
0.69-6 |
Bioinformatics |
Sapelo2 |
|
cisa |
20140304 |
Bioinformatics |
Sapelo |
|
Cleaveland4 |
4.4 |
Bioinformatics |
Sapelo |
|
Cleaveland4 |
4.4 |
Bioinformatics |
Sapelo2 |
|
Clustal-Omega |
1.2.4 |
Bioinformatics |
Sapelo2 |
|
ClustalW2 |
2.1 |
Bioinformatics |
Sapelo2 |
|
ClustalW |
1.83 |
Bioinformatics |
Sapelo |
|
clusteringConsensus |
1.02 |
Bioinformatics |
Sapelo |
|
cmake |
2.8.12.2, 3.0.2, 3.7.2, 3.9.3 |
Other |
Sapelo |
|
cnv-seq |
03132017 |
Bioinformatics |
Sapelo |
|
Conspred |
v1.32 |
Bioinformatics |
Sapelo |
|
cortex_var |
1.0.5.21 |
Bioinformatics |
Sapelo |
|
Croco_tools |
1.0 |
Other |
Sapelo |
|
CrossMap |
0.2.5 |
Bioinformatics |
Sapelo |
|
cufflinks |
2.2.1 |
Bioinformatics |
Sapelo |
|
Cufflinks |
2.2.1 |
Bioinformatics |
Sapelo2 |
|
Cufflinks |
2.2.1 |
Bioinformatics |
Teaching |
|
Cutadapt |
1.14 |
Bioinformatics |
Sapelo |
|
cutadapt |
1.9.1, 1.16 |
Bioinformatics |
Sapelo2 |
|
cv2 |
3.3.0.10 |
Other |
Sapelo |
|
CytoScape |
3.3.0 |
Bioinformatics |
Sapelo |
|
DBG2OLC |
20170208 |
Bioinformatics |
Teaching |
|
DDSCAT |
7.3.2 |
Chemistry |
Sapelo2 |
|
DELLY |
0.7.7 |
Bioinformatics |
Sapelo |
|
DIAMOND |
0.8.36 |
Bioinformatics |
Sapelo |
|
DIAMOND |
1.0 |
Bioinformatics |
Sapelo2 |
|
DISCOVARdenovo |
52488 |
Bioinformatics |
Sapelo2 |
|
DLCpar |
1.0 |
Bioinformatics |
Sapelo |
|
DLCpar |
1.0 |
Bioinformatics |
Sapelo2 |
|
Danpos2 |
2.2.2 |
Bioinformatics |
Sapelo |
|
datamash |
1.0.7 |
Other |
Sapelo |
|
ddocent |
2.2.16 |
Bioinformatics |
Sapelo |
|
DeFCoM |
1.0.1 |
Bioinformatics |
Sapelo |
|
DeconSeq |
0.4.3 |
Bioinformatics |
Sapelo |
|
deepTools |
3.0.2 |
Bioinformatics |
Sapelo2 |
|
deepnet |
20151013 |
Other |
Sapelo |
|
deeptools |
2.3.1 |
Bioinformatics |
Sapelo |
|
DendroPy |
4.3.0 |
Bioinformatics |
Sapelo2 |
|
dendropy |
3.12.0 |
Bioinformatics |
Sapelo |
|
depict |
140721 |
Bioinformatics |
Sapelo |
|
detect-NAHR |
2015.09.16 |
Bioinformatics |
Sapelo |
|
Doxygen |
1.8.7, 1.8.11, 1.8.13 |
Other |
Sapelo2 |
|
EIGENSOFT |
6.1.4 |
Bioinformatics |
Sapelo2 |
|
EMBOSS |
6.5.7 |
Bioinformatics |
Sapelo |
|
EMBOSS |
6.6.0 |
Bioinformatics |
Sapelo2 |
|
EMBOSS |
6.6.0 |
Bioinformatics |
Teaching |
|
EMMAX |
beta |
Bioinformatics |
Sapelo2 |
|
EPIG-Seq |
v01 |
Bioinformatics |
Sapelo |
|
ESMF |
7.0.2 |
Other |
Sapelo2 |
|
emirge |
0.61.1 |
Bioinformatics |
Sapelo |
|
espeak |
1.48.04 |
Other |
Sapelo |
|
ExaML |
3.0.11 |
Bioinformatics |
Sapelo |
|
exabayes |
1.4.1 |
Bioinformatics |
Sapelo |
|
exonerate |
2.2.0 |
Bioinformatics |
Sapelo |
|
Exonerate |
2.4.0 |
Bioinformatics |
Sapelo2 |
|
Expander |
7.11 |
Bioinformatics |
Sapelo |
|
FALCON |
0.4.0 |
Bioinformatics |
Sapelo |
|
FALCON |
02282018_unzip |
Bioinformatics |
Sapelo2 |
|
FASTA |
36.3.5e |
Bioinformatics |
Sapelo2 |
|
FASTQSim |
3.0 |
Bioinformatics |
Sapelo |
|
FASTX-Toolkit |
0.0.14 |
Bioinformatics |
Sapelo2 |
|
FFTW |
2.1.5, 3.3.4 |
Math |
Sapelo |
|
FFTW |
3.3.4, 3.3.6, 3.3.7 |
Math |
Sapelo2 |
|
FFmpeg |
2.8.2 |
Other |
Sapelo |
|
FFmpeg |
3.1.3, 3.4.1 |
Other |
Sapelo2 |
|
FIAT |
1.6.0 |
Other |
Sapelo2 |
|
FLASH |
1.2.11 |
Bioinformatics |
Sapelo |
|
FLASH |
1.2.11 |
Bioinformatics |
Sapelo2 |
|
FLTK |
1.3.4 |
Other, |
Sapelo2 |
|
Fast-Plast |
1.2.6 |
Bioinformatics |
Sapelo2 |
|
FastME |
2.1.5 |
Bioinformatics |
Sapelo |
|
FastME |
2.1.5 |
Bioinformatics |
Sapelo2 |
|
FastPlast |
1.2.6 |
Bioinformatics |
Sapelo |
|
FastQC |
0.11.4 |
Bioinformatics |
Sapelo |
|
FastQC |
0.11.5 |
Bioinformatics |
Sapelo2 |
|
FastSTRUCTURE |
1.0 |
Bioinformatics |
Sapelo2 |
|
fastStructure |
1.0 |
Bioinformatics |
Sapelo |
|
FastTree |
2.1.10 |
Bioinformatics |
Sapelo2 |
|
FastX |
0.0.13.2, 0.0.14 |
Bioinformatics |
Sapelo |
|
fastphase |
1.4.0 |
Bioinformatics |
Sapelo |
|
Find_Cns |
2016/07/21 |
Bioinformatics |
Sapelo |
|
fineRADstructure |
2016/12/09 |
Bioinformatics |
Sapelo |
|
FineSTRUCTURE |
2.0.7 |
Bioinformatics |
Sapelo |
|
fineSTRUCTURE |
2.1.3 |
Bioinformatics |
Sapelo2 |
|
FoX |
4.1.2 |
Library |
Sapelo2 |
|
FreeSurfer |
6.0.0 |
Medical-Informatics |
Sapelo |
|
Freebayes |
1.0.1 |
Bioinformatics |
Sapelo |
|
Freebayes |
1.2.0 |
Bioinformatics |
Sapelo2 |
|
FriBidi |
1.0.1 |
Library |
Sapelo2 |
|
GAG |
2.0.1 |
Bioinformatics |
Teaching |
|
GAMESS |
5Dec2014 |
Chemistry |
Sapelo |
|
GAMESS |
14Feb2018 |
Chemistry |
Sapelo2 |
|
GAP |
4.8.7 |
Other, |
Sapelo |
|
GAPIT |
20180524 |
Bioinformatics |
Sapelo2 |
|
GATK |
3.4-0, 3.8-0, 4.0.3.0 |
Bioinformatics |
Sapelo2 |
|
GATK |
3.8-0, 3.4-0 |
Bioinformatics |
Teaching |
|
GAUSSIAN |
09 |
Chemistry |
Sapelo |
|
GAUSSIAN |
09 |
Chemistry |
Sapelo2 |
|
GAWN |
0.3.2 |
Bioinformatics |
Sapelo |
|
GBlocks |
0.91b |
Bioinformatics |
Sapelo2 |
|
GCTA |
1.26.0 |
Bioinformatics |
Sapelo |
|
GCTA |
1.26.0 |
Bioinformatics |
Sapelo2 |
|
GD |
2.66 |
Bioinformatics |
Sapelo2 |
|
GDAL |
2.1.0, 2.2.2 |
Library |
Sapelo2 |
|
GDC-client |
1.0.1 |
Bioinformatics |
Sapelo |
|
GEM-library |
20130406-045632 |
Bioinformatics |
Sapelo2 |
|
GEM |
2.5 |
Bioinformatics |
Sapelo |
|
GEOS |
3.6.2 |
Library |
Sapelo2 |
|
GFlow |
0.1.7 |
Library |
Sapelo2 |
|
GKIN |
1.1 |
Bioinformatics |
Sapelo |
|
GLPK |
4.63, 4.65 |
Programming |
Sapelo2 |
|
GLib |
2.49.5, 2.53.5, 2.54.3 |
Library |
Sapelo2 |
|
GMA |
0.1.5 |
Bioinformatics |
Sapelo |
|
GMAP-GSNAP |
2016-11-07 |
Bioinformatics |
Sapelo2 |
|
GMATA |
2017-01-14 |
Bioinformatics |
Sapelo |
|
GMP |
4.3.1, 6.0.0 |
Library |
Sapelo |
|
GMP |
4.3.2, 6.1.1, 6.1.2 |
Library |
Sapelo2 |
|
GMPFRXX |
20081116 |
Library |
Sapelo |
|
GNU |
4.4.7, 4.7.4, 5.3.0 |
Compiler |
Sapelo |
|
GObject-Introspection |
1.49.1, 1.54.1 |
Other |
Sapelo2 |
|
GSL |
1.16 |
Math |
Sapelo |
|
GSL |
1.16, 2.1, 2.3. 2.4 |
Math |
Sapelo2 |
|
GStreamer |
1.14.0 |
Bioinformatics |
Sapelo2 |
|
GTK+ |
2.24.31 |
Library |
Sapelo2 |
|
GTS |
0.7.6 |
Library |
Sapelo2 |
|
gam-ngs |
1.1b |
Bioinformatics |
Sapelo |
|
GapFiller |
2.1.1 |
Bioinformatics |
Sapelo |
|
GapFiller |
2.1.1 |
Bioinformatics |
Teaching |
|
gat |
1.2 |
Bioinformatics |
Sapelo |
|
gatk |
3.6 |
Bioinformatics |
Sapelo |
|
GaussView |
5 |
Chemistry |
Sapelo |
|
Gblocks |
0.91b |
Bioinformatics |
Sapelo |
|
gd |
2.2.4 |
Bioinformatics |
Sapelo |
|
gdal |
2.1.0 |
Library |
Sapelo |
|
gdc-client |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
Gdk-pixbuf |
2.36.0 |
Library |
Sapelo2 |
|
Gemini |
0.20.0 |
Bioinformatics |
Sapelo |
|
GeneMark-ES |
4.33 |
Bioinformatics |
Sapelo |
|
GeneMark.hmm.eukaryotic |
4.30 |
Bioinformatics |
Sapelo2 |
|
GeneMarkES |
4.33 |
Bioinformatics |
Sapelo2 |
|
GeneMarkES |
4.33 |
Bioinformatics |
Teaching |
|
GeneMarkS-T |
4.33 |
Bioinformatics |
Sapelo2 |
|
GeneMarkS |
4.30 |
Bioinformatics |
Sapelo2 |
|
Gengetopt |
2.22 |
Other |
Sapelo |
|
Genome |
Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 |
Bioinformatics |
Sapelo2 |
|
GenomeTools |
1.5.9 |
Bioinformatics |
Sapelo |
|
GenomeTools |
1.5.9 |
Bioinformatics |
Sapelo2 |
|
GenomicConsensus |
3.0.2 |
Bioinformatics |
Sapelo |
|
gensim |
2.3.0 |
Library |
Sapelo |
|
geos |
3.5.0 |
Library |
Sapelo |
|
Gerud3 |
12202017 |
Bioinformatics |
Sapelo |
|
gff3ToGenePred |
1.0 |
Bioinformatics |
Sapelo |
|
gffcompare |
0.10.4 |
Bioinformatics |
Sapelo |
|
Gffcompare |
0.10.4 |
Bioinformatics |
Sapelo2 |
|
gffread |
0.9.12 |
Bioinformatics |
Sapelo2 |
|
Ghostscript |
9.20, 9.22 |
Other |
Sapelo2 |
|
git |
1.7.1, 2.7.0 |
Other |
Sapelo |
|
gmap-gsnap |
2017-01-14 |
Bioinformatics |
Sapelo |
|
gnuplot |
4.2.6 |
Bioinformatics |
Sapelo |
|
gnuplot |
5.0.5 |
Bioinformatics |
Sapelo2 |
|
google-cloud |
0.32.0 |
Other |
Sapelo |
|
GrADS |
2.1a3 |
Other |
Sapelo |
|
grace |
5.1.25 |
Graphics |
Sapelo |
|
grace |
5.1.25 |
Graphics |
Sapelo2 |
|
GraftM |
0.10.1 |
Bioinformatics |
Sapelo |
|
Graphviz |
2.40.1 |
Other |
Sapelo |
|
Graphviz |
2.40.1 |
Other |
Sapelo2 |
|
Gromacs |
5.0.2, 5.1.3 |
Chemistry |
Sapelo |
|
Guile |
1.8.8 |
Other |
Sapelo2 |
|
h5py |
2.6.0 |
Other |
Sapelo |
|
HDF5 |
1.8.6, 1.8.14 |
Library |
Sapelo |
|
HGTFinder |
20170929 |
Bioinformatics |
Sapelo |
|
HH-suite |
3.0 |
Bioinformatics |
Sapelo |
|
HINGE |
032717 |
Bioinformatics |
Sapelo |
|
HISAT2 |
2.1.0 |
Bioinformatics |
Sapelo |
|
HISAT2 |
2.1.0 |
Bioinformatics |
Sapelo2 |
|
HMMER |
3.1b2 |
Bioinformatics |
Sapelo2 |
|
HPCGridRunner |
1.0.2 |
Tools |
Sapelo |
|
HPCGridRunner |
1.0.2 |
Tools |
Sapelo2 |
|
HTSeq |
0.9.1 |
Bioinformatics |
Sapelo2 |
|
HUMAnN2 |
0.6.1 |
Bioinformatics |
Sapelo |
|
hapcut2 |
20170126 |
Bioinformatics |
Sapelo |
|
Haploview |
4.2 |
Bioinformatics |
Sapelo |
|
harp |
130306_105556 |
Bioinformatics |
Sapelo |
|
HiCUP |
0.5.9 |
Bioinformatics |
Sapelo |
|
hic-pro |
2.8.0 |
Bioinformatics |
Sapelo |
|
hindex |
1.42 |
Bioinformatics |
Sapelo2 |
|
HipMer |
0.9.4 |
Bioinformatics |
Sapelo |
|
Hmmer |
3.1b2 |
Bioinformatics |
Sapelo |
|
Homer |
4.8 |
Bioinformatics |
Sapelo |
|
Homer |
4.9.1, 4.10 |
Bioinformatics |
Sapelo2 |
|
htseq |
0.6.1p1 |
Bioinformatics |
Sapelo |
|
HyDe |
1.0 |
Bioinformatics |
Sapelo |
|
HyPhy |
2.3.5 |
Bioinformatics |
Sapelo |
|
I-TASSER |
5.0 |
Bioinformatics |
Sapelo |
|
IDBA |
1.1.2 |
Bioinformatics |
Sapelo |
|
IGV |
2.3.81 |
Bioinformatics |
Sapelo |
|
IGV |
2.4.4 |
Bioinformatics |
Sapelo2 |
|
IGVTools |
2.3.81 |
Bioinformatics |
Sapelo |
|
IGVTools |
2.3.98 |
Bioinformatics |
Sapelo2 |
|
IQ-Tree |
1.5.5, 1.6.1 |
Bioinformatics |
Sapelo |
|
IQ-Tree |
1.5.5, 1.6.5 |
Bioinformatics |
Sapelo2 |
|
iRep |
1.10 |
Bioinformatics |
Sapelo |
|
ITSTool |
2.0.4 |
Utility |
Sapelo2 |
|
illumiprocessor |
2.0.7 |
Bioinformatics |
Sapelo |
|
Infernal |
1.1.2 |
Bioinformatics |
Sapelo2 |
|
Intel |
14.0.0, 15.0.2 |
Compiler |
Sapelo |
|
iprscan |
5.16-55.0 |
Bioinformatics |
Sapelo |
|
iprscan |
5.29-68.0 |
Bioinformatics |
Sapelo2 |
|
ipyrad |
0.3.7, 0.5.15, 0.7.3 |
Bioinformatics |
Sapelo |
|
ipyrad |
0.7.24 |
Bioinformatics |
Sapelo2 |
|
IsoSeq_SA3nUP |
09272017 |
Bioinformatics |
Sapelo |
|
iva |
1.0.3 |
Bioinformatics |
Sapelo |
|
JAGS |
3.4.0, 4.1.0, 4.2.0 |
Statistics |
Sapelo |
|
JAGS |
4.3.0 |
Statistics |
Sapelo2 |
|
JModelTest |
2.1.10 |
Bioinformatics |
Sapelo2 |
|
JasPer |
1.900.1 |
Other |
Sapelo |
|
JasPer |
1.900.1, 2.0.12 |
Other |
Sapelo2 |
|
Java |
6, 7, 8 |
Programming |
Sapelo |
|
Java |
1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 |
Programming |
Sapelo2 |
|
Java |
1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92 |
Programming |
Teaching |
|
Jellyfish |
2.2.3 |
Bioinformatics |
Sapelo |
|
Jellyfish |
2.2.6 |
Bioinformatics |
Sapelo2 |
|
Jupyter |
2.5.0 |
Programming |
Sapelo |
|
KAT |
2.3.4 |
Bioinformatics |
Sapelo |
|
Kaiju |
1.6.2 |
Bioinformatics |
Sapelo2 |
|
kallisto |
0.42.5 |
Bioinformatics |
Sapelo |
|
kallisto |
0.43.1 |
Bioinformatics |
Sapelo2 |
|
KentUtils |
302.1.0 |
Bioinformatics |
Sapelo |
|
keras |
1.0.8, 2.0.4 |
Other |
Sapelo |
|
keras |
2.0.6 |
Other |
Sapelo2 |
|
KmerGenie |
1.7016 |
Bioinformatics |
Sapelo |
|
Kraken |
0.10.5-beta |
Bioinformatics |
Sapelo |
|
LAME |
3.100 |
Other |
Sapelo2 |
|
LAMMPS |
16Aug13, 5Sep14, 10Aug15, 7Dec15, 16Feb16, 30Jul16, 17Nov16 |
Chemistry |
Sapelo |
|
LAST |
719 |
Bioinformatics |
Sapelo |
|
LASTZ |
1.02.00, 1.03.73 |
Bioinformatics |
Sapelo |
|
LASTZ |
1.04.00 |
Bioinformatics |
Sapelo2 |
|
LDhat |
2.2 |
Bioinformatics |
Sapelo |
|
LDhat |
2.2 |
Bioinformatics |
Sapelo2 |
|
LDhelmet |
1.7 |
Bioinformatics |
Sapelo |
|
LDhelmet |
1.10 |
Bioinformatics |
Sapelo2 |
|
LDhot |
0.4 |
Bioinformatics |
Sapelo |
|
LEfSe |
20160621 |
Bioinformatics |
Sapelo |
|
LIBSVM |
3.21 |
Other |
Sapelo |
|
LS-DYNA |
10.123355 |
Engineering |
Sapelo2 |
|
LS-PrePost |
4.5 |
Engineering |
Sapelo2 |
|
LTR_retriever |
20170907 |
Bioinformatics |
Sapelo |
|
LTR_retriever |
1.6 |
Bioinformatics |
Sapelo2 |
|
LUMPY |
0.2.13 |
Bioinformatics |
Sapelo |
|
LUMPY |
0.2.13 |
Bioinformatics |
Sapelo2 |
|
LZO |
2.1.0 |
Bioinformatics |
Sapelo |
|
LZO |
2.10 |
Bioinformatics |
Sapelo2 |
|
libradtran |
1.7, 2.0.1 |
Other |
Sapelo |
|
librosa |
0.4.3 |
Other |
Sapelo |
|
Back To Top File:Up20.png|20px|link=#top |
|
Category: |
Category: |
[[]]
|
lmod |
5.8 |
Other |
Sapelo |
|
LoFreq |
2.1.2 |
Bioinformatics |
Sapelo |
|
LoFreq |
2.1.2 |
Bioinformatics |
Sapelo2 |
|
LocARNA |
1.9.2 |
Bioinformatics |
Sapelo |
|
LongRanger |
2.2.2 |
Bioinformatics |
Sapelo2 |
|
MACS2 |
2.1.1 |
Bioinformatics |
Sapelo |
|
MACS2 |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
MAFFT |
7.273, 7.313 |
Bioinformatics |
Sapelo2 |
|
MAFFT |
7.313, 7.273, 7.130 |
Bioinformatics |
Teaching |
|
MCL |
14.137 |
Bioinformatics |
Sapelo2 |
|
MCScanX-transposed |
0.8 |
Bioinformatics |
Sapelo |
|
MCScanX |
0.8 |
Bioinformatics |
Sapelo |
|
MCScanX |
0.8 |
Bioinformatics |
Sapelo2 |
|
MDEnergy |
2.3 |
Chemistry |
Sapelo |
|
MEGAHIT |
1.1.1, 1.1.3 |
Bioinformatics |
Sapelo2 |
|
MEGAN |
6.4.3 |
Bioinformatics |
Sapelo |
|
MEME |
4.10.2, 4.11.0 |
Bioinformatics |
Sapelo |
|
MEME |
4.11.0, 5.0.0_1 |
Bioinformatics |
Sapelo2 |
|
MET |
7.0 |
Other |
Sapelo2 |
|
METIS |
5.1.0 |
Other |
Sapelo2 |
|
MHAP |
2.1.1 |
Bioinformatics |
Sapelo |
|
MISO |
09132016 |
Bioinformatics |
Sapelo |
|
MITE-Hunter |
11-2011 |
Bioinformatics |
Sapelo2 |
|
MKL |
11.1, 11.2 |
Math |
Sapelo |
|
MOABS |
1.3.2 |
Bioinformatics |
Sapelo |
|
MOCAT |
1.3r2 |
Bioinformatics |
Sapelo |
|
MOTHUR |
1.37.5, 1.39.5 |
Bioinformatics |
Sapelo |
|
MP-EST |
1.5 |
Bioinformatics |
Sapelo |
|
MPFR |
3.1.2 |
Library |
Sapelo |
|
MPFRC++ |
3.6.2 |
Library |
Sapelo |
|
MREPS |
1.0.5 |
Bioinformatics |
Sapelo2 |
|
MSTmap |
20170927 |
Bioinformatics |
Sapelo |
|
MUMmer |
3.23 |
Bioinformatics |
Sapelo |
|
MUMmer |
3.23 |
Bioinformatics |
Sapelo2 |
|
MUMmer |
3.23 |
Bioinformatics |
Teaching |
|
MUSCLE |
3.8.31 |
Bioinformatics |
Sapelo |
|
MUSCLE |
3.8 |
Bioinformatics |
Sapelo2 |
|
MVFtools |
10112017 |
Bioinformatics |
Sapelo |
|
MaCS-simulator |
0.5d |
Bioinformatics |
Sapelo |
|
MaSuRCA |
3.1.3 |
Bioinformatics |
Sapelo |
|
MaSuRCA |
3.2.2 |
Bioinformatics |
Sapelo2 |
|
Mafft |
7.273-e |
Bioinformatics |
Sapelo |
|
mageck-vispr |
02242017 |
Bioinformatics |
Sapelo |
|
mageck |
0.5 |
Bioinformatics |
Sapelo |
|
Magma |
2.22-9 |
Other |
Sapelo |
|
Mahotas |
1.4.3 |
Bioinformatics |
Sapelo |
|
mahotas |
1.4.3 |
Bioinformatics |
Sapelo2 |
|
Make |
4.2 |
Programming |
Sapelo |
|
Maker |
2.31.9 |
Bioinformatics |
Sapelo2 |
|
Maker |
2.31.9 |
Bioinformatics |
Teaching |
|
Matlab |
R2015aSP1, R2015b, R2016b |
Other, |
Sapelo |
|
Mauve |
2.4.0 |
Bioinformatics |
Sapelo |
|
Mauve |
2015-02-13 |
Bioinformatics |
Sapelo2 |
|
Maven |
3.5.2 |
Bioinformatics |
Sapelo2 |
|
MaxBin |
2.1.1 |
Bioinformatics |
Sapelo |
|
Megahit |
1.1.1 |
Bioinformatics |
Sapelo |
|
Meraculous |
2.0 |
Bioinformatics |
Sapelo |
|
Meraculous |
2.2.5 |
Bioinformatics |
Sapelo2 |
|
Mercurial |
3.9 |
Other |
Sapelo |
|
Mercurial |
4.4.2 |
Other |
Sapelo2 |
|
MetaBAT |
20151110 |
Bioinformatics |
Sapelo |
|
metaSort |
1.3 |
Bioinformatics |
Sapelo |
|
Metal |
20110325 |
Bioinformatics |
Sapelo |
|
Metaphlan2 |
2.0 |
Bioinformatics |
Sapelo |
|
Metavelvet |
1.2.02 |
Bioinformatics |
Sapelo |
|
MetavelvetSL |
1.0 |
Bioinformatics |
Sapelo |
|
MethPipeline |
0.1_120115 |
Bioinformatics |
Sapelo |
|
methylpy |
08/25/2016 |
Bioinformatics |
Sapelo |
|
methylpy |
1.2.9, 1.3.2 |
Bioinformatics |
Sapelo2 |
|
miRDeep2 |
0.0.9 |
Bioinformatics |
Sapelo |
|
miRDeep2 |
0.0.8 |
Bioinformatics |
Sapelo2 |
|
miRanda |
aug2010 |
Bioinformatics |
Sapelo |
|
Migrate |
3.6.11 |
Bioinformatics |
Sapelo |
|
minced |
0.2.1 |
Bioinformatics |
Sapelo2 |
|
Minimac3 |
2.0.1 |
Bioinformatics |
Sapelo |
|
Minimap2 |
2.10 |
Bioinformatics |
Sapelo2 |
|
Minimap |
0.2 |
Bioinformatics |
Sapelo |
|
mirdeep-p |
1.3 |
Bioinformatics |
Sapelo |
|
mirdeep-p |
1.3 |
Bioinformatics |
Sapelo2 |
|
mlehot |
1.8.16 |
Bioinformatics |
Sapelo |
|
Mothur |
1.39.5 |
Bioinformatics |
Sapelo2 |
|
motif |
2.3.5, 2.3.8 |
Graphics |
Sapelo2 |
|
Mplus |
7.4 |
Statistics |
Sapelo |
|
MrBayes |
3.2.6 |
Bioinformatics |
Sapelo |
|
MrBayes |
3.2.6 |
Bioinformatics |
Sapelo2 |
|
MrDemuxy |
1.2.0 |
Bioinformatics |
Sapelo |
|
MuTect |
1.1.5 |
Bioinformatics |
Sapelo |
|
MultiLoc2 |
26-10-2009 |
Bioinformatics |
Sapelo |
|
MultiMappingCounter |
21-09-2017 |
Bioinformatics |
Sapelo |
|
MultiQC |
1.5 |
Bioinformatics |
Sapelo2 |
|
NAMD |
2.11 |
Chemistry |
Sapelo |
|
NAMD |
2.12 |
Chemistry |
Sapelo2 |
|
NASM |
2.11, 2.12, 2.13 |
Other |
Sapelo2 |
|
NCBI |
2.2.29 |
Bioinformatics |
Sapelo |
|
NCBIBLAST+ |
2.7.1 |
Bioinformatics |
Sapelo |
|
NCL |
6.4.0 |
Other |
Sapelo2 |
|
NETCDF |
3.6.3, 4.1.3, 4.3.2 |
Library |
Sapelo |
|
NGS-QC |
2.3.3 |
Bioinformatics |
Sapelo |
|
NGS |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
NWCHEM |
6.5 |
Chemistry |
Sapelo |
|
Ncbi_tools++ |
12.0.0 |
Bioinformatics |
Sapelo |
|
NeEstimator |
2.1 |
Bioinformatics |
Sapelo2 |
|
Newbler |
2.6 |
Bioinformatics |
Sapelo |
|
NextGenMap |
0.5.5 |
Bioinformatics |
Sapelo2 |
|
ngmlr |
0.2.6-beta |
Bioinformatics |
Sapelo2 |
|
Ngsutils |
0.5.9 |
Bioinformatics |
Sapelo |
|
nhPhyML |
20180515 |
Bioinformatics |
Sapelo2 |
|
Nseg |
20180530 |
Bioinformatics |
Sapelo2 |
|
NucleoATAC |
0.3.4 |
Bioinformatics |
Sapelo2 |
|
NxTrim |
v0.3.2-alpha |
Bioinformatics |
Sapelo |
|
OCaml |
4.01.0, 4.02.3 |
Programming |
Sapelo2 |
|
ORCA |
3.0.3, 4.0.0 |
Chemistry |
Sapelo |
|
ORCA |
3.0.3, 4.0.0.2, 4.0.1.2 |
Chemistry |
Sapelo2 |
|
ORGASM |
0.2.03 |
Bioinformatics |
Sapelo2 |
|
ORGanelle_ASeMbler |
0.2.03 |
Bioinformatics |
Sapelo2 |
|
Oases |
0.2.08, 0.2.09 |
Bioinformatics |
Sapelo2 |
|
Octave |
4.0.3 |
Other, |
Sapelo |
|
Oligotyping |
2.1 |
Bioinformatics |
Sapelo |
|
OpenBUGS |
3.2.3 |
Statistics |
Sapelo |
|
OpenCV |
2.4.13.3, 3.0 |
Other |
Sapelo |
|
opera |
2.0.6 |
Bioinformatics |
Sapelo |
|
OrthoFiller |
1.1.4 |
Bioinformatics |
Sapelo |
|
OrthoFinder |
1.1.8 |
Bioinformatics |
Sapelo |
|
OrthoFinder |
2.1.2 |
Bioinformatics |
Sapelo2 |
|
OrthoFinder |
2.1.2 |
Bioinformatics |
Teaching |
|
PAGIT |
1.64 |
Bioinformatics |
Sapelo2 |
|
PAML |
4.9h |
Bioinformatics |
Sapelo2 |
|
PAML |
4.9h |
Bioinformatics |
Teaching |
|
PANDAseq |
2.5 |
Bioinformatics |
Sapelo2 |
|
PASA |
2.3.3 |
Bioinformatics |
Sapelo2 |
|
PASTA |
1.6.4 |
Bioinformatics |
Sapelo |
|
PASTA |
1.8.2 |
Bioinformatics |
Sapelo2 |
|
PAUP |
4a162_centos64_intel |
Bioinformatics |
Sapelo2 |
|
PBLAT |
2.0.0 |
Bioinformatics |
Sapelo2 |
|
PBSuite |
15.8.24 |
Bioinformatics |
Sapelo |
|
PBSuite |
15.8.24 |
Bioinformatics |
Sapelo2 |
|
PCRE |
8.38, 8.39, 8.41 |
Library |
Sapelo2 |
|
PEAR |
0.9.10-src |
Bioinformatics |
Sapelo |
|
PEAR |
0.9.8 |
Bioinformatics |
Sapelo2 |
|
PETSc |
3.7.6 |
Math |
Sapelo |
|
PETSc |
3.8.4 |
Math |
Sapelo2 |
|
PGI |
2014 |
Compiler |
Sapelo |
|
PHASE |
2.1.1 |
Bioinformatics |
Sapelo |
|
PHYLIP |
3.697 |
Bioinformatics |
Sapelo2 |
|
PICRUSt |
1.1.3 |
Bioinformatics |
Sapelo2 |
|
PILER |
2.5 |
Bioinformatics |
Sapelo2 |
|
pIRS |
2.0.2 |
Bioinformatics |
Sapelo |
|
PLEK |
1.2 |
Bioinformatics |
Sapelo |
|
PLINK |
1.07, 1.9b |
Bioinformatics |
Sapelo2 |
|
PLUMED |
2.3.3 |
Chemistry |
Sapelo |
|
PRATT |
2.1 |
Bioinformatics |
Sapelo |
|
PRINSEQ |
0.20.4 |
Bioinformatics |
Sapelo |
|
PRINSEQ |
0.20.4 |
Bioinformatics |
Sapelo2 |
|
palfinder |
0.02.04 |
Bioinformatics |
Sapelo |
|
paml |
4.8 |
Bioinformatics |
Sapelo |
|
pandas |
0.16.0 |
Other |
Sapelo |
|
Pango |
1.40.3, 1.41.1 |
Library |
Sapelo2 |
|
ParaFly |
0.1.0 |
utility |
Sapelo |
|
PartitionFinder |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
Paup |
4a147 |
Bioinformatics |
Sapelo |
|
pbh5tools |
0.8.0 |
Bioinformatics |
Sapelo2 |
|
PePr |
1.1.18 |
Bioinformatics |
Sapelo |
|
Peakranger |
1.18 |
Bioinformatics |
Sapelo |
|
Perl |
5.24.0-thread |
Programming |
Sapelo |
|
Perl |
5.20.3, 5.24.0, 5.24.1, 5.26.0, 5.26.1 |
Programming |
Sapelo2 |
|
Perl |
5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 |
Programming |
Teaching |
|
PhaseTank |
1.0 |
Bioinformatics |
Sapelo |
|
PhaseTank |
1.0 |
Bioinformatics |
Sapelo2 |
|
phaser |
1.2.0 |
Bioinformatics |
Sapelo |
|
Phobius |
1.01 |
Bioinformatics |
Sapelo2 |
|
Phred/Phrap/Conced |
Phred version: 0.071220.c, Phrap version: 0.990329, Consed version: 29.0 |
Bioinformatics |
Sapelo2 |
|
PhyML |
3.0 |
Bioinformatics |
Sapelo |
|
PhyML |
3.3.20170530 |
Bioinformatics |
Sapelo2 |
|
PhyloBayes-MPI |
1.7 |
Bioinformatics |
Sapelo |
|
PhyloBayes-MPI |
20161021 |
Bioinformatics |
Sapelo2 |
|
PhyloGenie |
11082017 |
Bioinformatics |
Sapelo |
|
PhyloNet |
3.6.0 |
Bioinformatics |
Sapelo |
|
phyluce |
1.5.0 |
Bioinformatics |
Sapelo |
|
Phyluce |
1.6.1 |
Bioinformatics |
Sapelo2 |
|
picard |
2.1.1, 2.4.1 |
Bioinformatics |
Sapelo |
|
picard |
2.16.0 |
Bioinformatics |
Sapelo2 |
|
Picard |
2.16.0 |
Bioinformatics |
Teaching |
|
picrust |
1.1.0 |
Bioinformatics |
Sapelo |
|
pigz |
2.3.4 |
Other |
Sapelo |
|
pigz |
2.3.3 |
Other |
Sapelo2 |
|
Pilon |
1.21 |
Bioinformatics |
Sapelo |
|
Pilon |
1.22 |
Bioinformatics |
Sapelo2 |
|
Pilon |
1.22 |
Bioinformatics |
Teaching |
|
Pindel |
0.2.5b8 |
Bioinformatics |
Sapelo |
|
Pitchfork |
09272017 |
Bioinformatics |
Sapelo |
|
platypus |
0.8.1 |
Bioinformatics |
Sapelo |
|
plink |
1.07, 1.9-beta3 |
Bioinformatics |
Sapelo |
|
poretools |
0.6.0 |
Bioinformatics |
Sapelo |
|
portaudio |
19 |
Other |
Sapelo |
|
prep-chem-src |
1.5 |
Other |
Sapelo |
|
Primer3 |
2.0.0-alpha |
Bioinformatics |
Sapelo |
|
Primer3 |
2.3.7 |
Bioinformatics |
Sapelo2 |
|
ProbABEL |
0.5.0 |
Bioinformatics |
Sapelo |
|
Prodigal |
2.6.3 |
Bioinformatics |
Sapelo |
|
Prodigal |
2.6.3 |
Bioinformatics |
Sapelo2 |
|
Prokka |
1.11 |
Bioinformatics |
Sapelo |
|
Prokka |
1.13 |
Bioinformatics |
Sapelo2 |
|
proovread |
2.12 |
Bioinformatics |
Sapelo |
|
Proovread |
2.14.1 |
Bioinformatics |
Teaching |
|
protobuf |
2.4.1, 2.6.1, 3.0.0-beta1 |
Other |
Sapelo |
|
protobuf |
3.3.0, 3.4.0 |
Other |
Sapelo2 |
|
Prottest3 |
3.4.2 |
Bioinformatics |
Sapelo |
|
pyDNase |
0.2.5 |
Bioinformatics |
Sapelo |
|
PyPy |
2.7-5.10.0 |
Programming |
Sapelo |
|
PyPy |
6.0.0 (2.7.14) |
Programming |
Sapelo2 |
|
pyRAD |
3.0.64 |
Bioinformatics |
Sapelo |
|
PyTorch |
0.1.9, 0.1.11 |
Other |
Sapelo |
|
pybedtools |
09/22/2016 |
Bioinformatics |
Sapelo |
|
pybedtools |
0.7.10 |
Bioinformatics |
Sapelo2 |
|
pydub |
0.21.0 |
Other |
Sapelo |
|
pyfasta |
0.5.2 |
Bioinformatics |
Sapelo |
|
Pysam |
0.10.0, 0.13 |
Bioinformatics |
Sapelo2 |
|
Python |
2.6.6, 2.7.8, 2.7.13, 3.5.2, 3.6.4 |
Programming |
Sapelo |
|
Python |
2.7.12, 2.7.14, 3.4.3, 3.5.1 |
Programming |
Sapelo2 |
|
Python |
3.6.4, 3.5.2, 2.7.14, 2.7.12 |
Programming |
Teaching |
|
QIIME2 |
2018.2, 2018.4, 2018.6 |
Bioinformatics |
Sapelo2 |
|
QUAST |
4.5 |
Bioinformatics |
Sapelo |
|
QUAST |
4.2, 4.6.1, 4.6.3, 5.0.0 |
Bioinformatics |
Sapelo2 |
|
Qiime |
1.9.1 |
Bioinformatics |
Sapelo |
|
Quake |
0.3 |
Bioinformatics |
Sapelo |
|
Qualimap2 |
2.2.1 |
Bioinformatics |
Sapelo |
|
Qualimap2 |
2.2.1 |
Bioinformatics |
Sapelo2 |
|
Quantum |
5.4.0 |
Chemistry |
Sapelo |
|
Quantum |
6.2.0 |
Chemistry |
Sapelo2 |
|
R |
3.1.2, 3.2.1, 3.2.3, 3.3.1 |
Statistics |
Sapelo |
|
R |
3.4.4 |
Statistics |
Sapelo2 |
|
R |
3.4.4 |
Statistics |
Teaching |
|
RAPSearch2 |
2.23 |
Bioinformatics |
Sapelo |
|
RATT |
10052017 |
Bioinformatics |
Sapelo |
|
RATT |
20180710 |
Bioinformatics |
Sapelo2 |
|
RAxML |
8.2.4 |
Bioinformatics |
Sapelo |
|
RAxML |
8.2.4, 8.2.11 |
Bioinformatics |
Sapelo2 |
|
RAxML |
8.2.11 |
Bioinformatics |
Teaching |
|
RDPTools |
2.2.0 |
Bioinformatics |
Sapelo |
|
READemption |
0.3.7 |
Bioinformatics |
Sapelo |
|
REAPR |
1.0.18 |
Bioinformatics |
Sapelo |
|
REAPR |
1.0.18 |
Bioinformatics |
Sapelo2 |
|
RECON |
1.08 |
Bioinformatics |
Sapelo2 |
|
RED |
1.0 |
Bioinformatics |
Sapelo |
|
REPCLASS |
1.0.1 |
Bioinformatics |
Sapelo |
|
REPET |
2.5 |
Bioinformatics |
Sapelo2 |
|
RES-Scanner |
20170726 |
Bioinformatics |
Sapelo |
|
RGT |
0.11.2 |
Bioinformatics |
Sapelo |
|
RMBlast |
2.6.0 |
Bioinformatics |
Sapelo2 |
|
RNAmmer |
1.2 |
Bioinformatics |
Sapelo |
|
RNAmmer |
1.2 |
Bioinformatics |
Sapelo2 |
|
RNAple |
0.2 |
Bioinformatics |
Sapelo |
|
RSEM |
1.2.20 |
Bioinformatics |
Sapelo |
|
RSEM |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
RSeQC |
2.6.4 |
Bioinformatics |
Sapelo |
|
racon |
20161214 |
Bioinformatics |
Sapelo |
|
racon |
20180406 |
Bioinformatics |
Sapelo2 |
|
Randfold |
2.0.1 |
Bioinformatics |
Sapelo |
|
randfold |
2.0.1 |
Bioinformatics |
Sapelo2 |
|
Ray |
2.3.1 |
Bioinformatics |
Sapelo |
|
Rcorrector |
1.0.2 |
Bioinformatics |
Sapelo2 |
|
repdenovo |
02232017 |
Bioinformatics |
Sapelo |
|
RepeatExplorer-TAREAN |
12/13/2016, 01/10/2017 |
Bioinformatics |
Sapelo |
|
RepeatExplorer |
02/2015 |
Bioinformatics |
Sapelo |
|
RepeatMasker |
4.0.7 |
Bioinformatics |
Teaching |
|
RepeatModeler |
1.0.11 |
Bioinformatics |
Teaching |
|
RepeatScout |
1.05 |
Bioinformatics |
Sapelo2 |
|
RepeatScout |
1.05 |
Bioinformatics |
Teaching |
|
Repeatmasker |
4.0.5 |
Bioinformatics |
Sapelo |
|
Repeatmasker |
4.0.7 |
Bioinformatics |
Sapelo2 |
|
Repeatmodeler |
1.0.8 |
Bioinformatics |
Sapelo |
|
Repeatmodeler |
1.0.11 |
Bioinformatics |
Sapelo2 |
|
Revbayes |
1.0.5 |
Bioinformatics |
Sapelo |
|
Rmpi |
0.6-6 |
Programming |
Sapelo |
|
Rmpi |
0.6-6 |
Programming |
Sapelo2 |
|
Roary |
3.8 |
Bioinformatics |
Sapelo |
|
Roary |
3.12.0 |
Bioinformatics |
Sapelo2 |
|
Roms_tools |
3.1.1 |
Other |
Sapelo |
|
Rosetta |
2016.15.58628, 2017.26.59567 |
Chemistry |
Sapelo |
|
Ruby |
2.4.2 |
Programming |
Sapelo |
|
runBNG |
1.03 |
Bioinformatics |
Sapelo2 |
|
SAMtools |
0.1.19, 1.3.1, 1.6 |
Bioinformatics |
Sapelo2 |
|
SAMtools |
1.6, 1.3.1, 0.1.19 |
Bioinformatics |
Teaching |
|
SATé |
2.2.7 |
Bioinformatics |
Sapelo |
|
SGA |
0.10.15 |
Bioinformatics |
Sapelo |
|
SHORE |
0.9.3 |
Bioinformatics |
Sapelo |
|
SINE_Scan |
1.1.1 |
Bioinformatics |
Sapelo |
|
SInC-simulator |
2017.06.06 |
Bioinformatics |
Sapelo |
|
SMRTLINK |
5.1.0.26412 |
Bioinformatics |
Sapelo2 |
|
SMRTLINK |
5.1.0.26412, 5.0.1.9585 |
Bioinformatics |
Teaching |
|
SMRTanalysis |
3.0.2 |
Bioinformatics |
Sapelo |
|
SNAP-Zoe |
20060728 |
Bioinformatics |
Sapelo2 |
|
SNAP-Zoe |
20060728 |
Bioinformatics |
Teaching |
|
SNP-ML |
1.3.0 |
Bioinformatics |
Sapelo2 |
|
SNPhylo |
20160204 |
Bioinformatics |
Sapelo |
|
SNPhylo |
20160204 |
Bioinformatics |
Sapelo2 |
|
SOAPaligner |
2.21 |
Bioinformatics |
Sapelo |
|
SOAPaligner |
2.21 |
Bioinformatics |
Sapelo2 |
|
SOAPdenovo2 |
r240 |
Bioinformatics |
Sapelo |
|
SOAPdenovo2 |
r240 |
Bioinformatics |
Sapelo2 |
|
SOAPdenovo2 |
r240 |
Bioinformatics |
Teaching |
|
SOP-GPU |
20180404 |
Bioinformatics |
Sapelo2 |
|
SPAdes |
3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 |
Bioinformatics |
Sapelo |
|
SPAdes |
3.11.1 |
Bioinformatics |
Sapelo2 |
|
SPAdes |
3.11.1 |
Bioinformatics |
Teaching |
|
SQUID |
1.1 |
Bioinformatics |
Sapelo |
|
SRAToolKit |
2.8.2-1 |
Bioinformatics |
Sapelo |
|
SRAToolKit |
2.8.2-1, 2.9.1 |
Bioinformatics |
Sapelo2 |
|
SSPACE |
2.1.1 |
Bioinformatics |
Sapelo |
|
SSPACE |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
STAMP |
2.1.3 |
Bioinformatics |
Sapelo |
|
STAMPY |
1.0.31 |
Bioinformatics |
Sapelo |
|
STAR |
2.5.3a |
Bioinformatics |
Sapelo |
|
STAR |
2.5.3a, 2.6.0c |
Bioinformatics |
Sapelo2 |
|
STAR |
2.6.0c, 2.5.3a |
Bioinformatics |
Teaching |
|
SUNTANS |
20150923 |
Other |
Sapelo |
|
SUNTANS |
20180305 |
Other |
Sapelo2 |
|
SUPPA |
06122015 |
Bioinformatics |
Sapelo |
|
SVDetect |
0.7 |
Bioinformatics |
Sapelo |
|
SVDetect |
0.7 |
Bioinformatics |
Sapelo2 |
|
SVMlight |
6.02 |
Other |
Sapelo |
|
SWIG |
3.0.12 |
Bioinformatics |
Sapelo |
|
SWIG |
3.0.12 |
Bioinformatics |
Sapelo2 |
|
Sabre |
02/03/2017 |
Other |
Sapelo |
|
[[|Sage-Sapelo|Sage]] |
7.4, 8.0 |
Other |
Sapelo |
|
Salmon |
0.6.1-pre |
Bioinformatics |
Sapelo |
|
Salmon |
0.8.2 |
Bioinformatics |
Sapelo2 |
|
sam2pairwise |
1.0.0 |
Bioinformatics |
Sapelo |
|
samtools |
1.3.1 1.6 |
Bioinformatics |
Sapelo |
|
sbt |
0.13.12, 1.0.2 |
Other, |
Sapelo |
|
sbt |
1.1.1 |
Other, |
Sapelo2 |
|
ScaLAPACK |
2.0.2 |
Math |
Sapelo |
|
scala |
2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 |
Other, |
Sapelo |
|
scala |
2.12.4 |
Other, |
Sapelo2 |
|
scalpel |
0.5.3 |
Bioinformatics |
Sapelo |
|
Scripture |
3/20/2015 |
Bioinformatics |
Sapelo |
|
Seq-Gen |
1.3.3 |
Bioinformatics |
Sapelo |
|
seqtk |
1.0-r63-dirty |
Bioinformatics |
Sapelo |
|
seqtk |
1.2 |
Bioinformatics |
Sapelo2 |
|
shapeit |
v2.r837 |
Bioinformatics |
Sapelo |
|
shapeit |
v2.r904 |
Bioinformatics |
Sapelo2 |
|
ShortStack |
3.8.5 |
Bioinformatics |
Sapelo |
|
sicer |
1.1 |
Bioinformatics |
Sapelo |
|
sickle |
1.33 |
Bioinformatics |
Sapelo |
|
SignalP |
4.1f |
Bioinformatics |
Sapelo2 |
|
Silix |
1.2.9 |
Bioinformatics |
Sapelo2 |
|
slda |
0.1.4 |
Other |
Sapelo |
|
smoke |
4.5 |
Other |
Sapelo2 |
|
snakemake |
4.0.0 |
Bioinformatics |
Sapelo |
|
Sniffles |
1.0.8 |
Bioinformatics |
Sapelo2 |
|
snpEff |
4.3t |
Bioinformatics |
Sapelo2 |
|
SnpEff |
4.3t |
Bioinformatics |
Teaching |
|
SortMeRNA |
2.1 |
Bioinformatics |
Sapelo |
|
SortMeRNA |
2.1 |
Bioinformatics |
Sapelo2 |
|
Spark |
1.6.0, 2.0.1, 2.2.1 |
Other |
Sapelo |
|
SpeedSeq |
052317 |
Bioinformatics |
Sapelo |
|
stacks |
1.40, 1.44, 2.0beta2, 2.0beta7 |
Bioinformatics |
Sapelo |
|
Stacks |
1.48 |
Bioinformatics |
Sapelo2 |
|
Stacks |
2.0, 1.48 |
Bioinformatics |
Teaching |
|
StringTie |
1.2.0 |
Bioinformatics |
Sapelo |
|
StringTie |
1.3.3 |
Bioinformatics |
Sapelo2 |
|
structure |
2.3.4 |
Bioinformatics |
Sapelo |
|
Structure |
2.3.4 |
Bioinformatics |
Sapelo2 |
|
subread |
1.5.2 |
Bioinformatics |
Sapelo |
|
Subread |
1.6.2 |
Bioinformatics |
Sapelo2 |
|
Supernova |
2.0.1 |
Bioinformatics |
Sapelo2 |
|
T-Coffee |
11.00.8cbe486 |
Bioinformatics |
Sapelo |
|
T-REX |
1.0 |
Bioinformatics |
Sapelo |
|
TASSEL |
5.2.44 |
Bioinformatics |
Sapelo2 |
|
TEPID |
0.6 |
Bioinformatics |
Sapelo |
|
TIGRA |
0.4.0 |
Bioinformatics |
Sapelo |
|
TMHMM |
2.0c |
Bioinformatics |
Sapelo2 |
|
TOFU2 |
3.9 |
Bioinformatics |
Sapelo |
|
TPP |
5.1.0 |
Bioinformatics |
Sapelo2 |
|
TRNAscan-SE |
2.0.0 |
Bioinformatics |
Sapelo |
|
TRNAscan-SE |
2.0.0 |
Bioinformatics |
Sapelo2 |
|
Tandem |
4.09 |
Bioinformatics |
Sapelo |
|
tassel |
5.2.42 |
Bioinformatics |
Sapelo |
|
Tbl2asn |
04172018 |
Bioinformatics |
Sapelo2 |
|
TensorFlow-models |
20180620 |
Other |
Sapelo2 |
|
TensorFlow |
1.8.0 |
Other |
Sapelo2 |
|
tesseract |
3.04.01 |
Bioinformatics |
Sapelo |
|
Theano |
0.8.0 |
Other |
Sapelo |
|
TopHat |
2.1.1 |
Bioinformatics |
Teaching |
|
tophat |
2.0.14 |
Bioinformatics |
Sapelo |
|
Tophat |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
TransDecoder |
2.0.1 |
Bioinformatics |
Sapelo |
|
TransDecoder |
2.1.0 |
Bioinformatics |
Sapelo2 |
|
Transposome |
0.09.7 |
Bioinformatics |
Sapelo |
|
TransposonPSI |
08222010 |
Bioinformatics |
Sapelo |
|
Transrate |
1.0.1 |
Bioinformatics |
Sapelo |
|
TreeMix |
1.13 |
Bioinformatics |
Sapelo |
|
TrimGalore |
4.0 |
Bioinformatics |
Sapelo |
|
Trim_Galore |
0.4.5 |
Bioinformatics |
Sapelo2 |
|
trimmomatic |
0.36 |
Bioinformatics |
Sapelo |
|
Trimmomatic |
0.36 |
Bioinformatics |
Sapelo2 |
|
Trinity |
2.06 |
Bioinformatics |
Sapelo |
|
Trinity |
r20140717, 2.5.1, 2.6.6 |
Bioinformatics |
Sapelo2 |
|
Trinity |
2.6.6 |
Bioinformatics |
Teaching |
|
Trinotate |
3.1.1 |
Bioinformatics |
Sapelo |
|
Trinotate |
3.1.1 |
Bioinformatics |
Sapelo2 |
|
UCHIME |
4.2.40 |
Bioinformatics |
Sapelo |
|
UCSC |
06-17-2015 |
Bioinformatics |
Sapelo |
|
UPP |
3.2 |
Other |
Sapelo2 |
|
ucsc |
359 |
Bioinformatics |
Sapelo2 |
|
usearch |
10.0.240 |
Bioinformatics |
Sapelo |
|
VCF-kit |
0.1.6 |
Bioinformatics |
Sapelo2 |
|
VCFtools |
0.1.15 |
Bioinformatics |
Sapelo2 |
|
VCFtools |
0.1.15 |
Bioinformatics |
Teaching |
|
VSEARCH |
2.8.1 |
Bioinformatics |
Sapelo2 |
|
VarScan |
2.4.2 |
Bioinformatics |
Sapelo2 |
|
vcf2diploid |
0.2.6a |
Chemistry |
Sapelo2 |
|
vcf2phylip |
1.5 |
Bioinformatics |
Sapelo2 |
|
vcflib |
1.0.0-rc1 |
Bioinformatics |
Sapelo |
|
vcflib |
20180410 |
Bioinformatics |
Sapelo2 |
|
vcftools |
0.1.12b |
Bioinformatics |
Sapelo |
|
velvet |
1.2.10 |
Bioinformatics |
Sapelo |
|
Velvet |
1.2.10 |
Bioinformatics |
Sapelo2 |
|
Velvet |
1.2.10 |
Bioinformatics |
Teaching |
|
ViennaRNA |
2.1.3 |
Bioinformatics |
Sapelo |
|
ViennaRNA |
2.4.3, 2.4.6 |
Bioinformatics |
Sapelo2 |
|
viromescan |
05292017 |
Bioinformatics |
Sapelo |
|
Vmatch |
2.3.0 |
Bioinformatics |
Sapelo2 |
|
voxnet |
0.1 |
Other |
Sapelo |
|
vsearch |
1.10.1 |
Bioinformatics |
Sapelo |
|
WPS |
3.6, 3.6.1, 3.7, 3.8 |
Other |
Sapelo |
|
WPS |
3.8 |
Other |
Sapelo2 |
|
WRF-Chem |
3.6.1, 3.8 |
Other |
Sapelo |
|
WRF-Chem |
3.6.1, 3.8.0 |
Other |
Sapelo2 |
|
WRF-Fire |
20170221 |
Other |
Sapelo2 |
|
WRF |
3.6, 3.6.1, 3.7, 3.8 |
Other |
Sapelo |
|
WRF |
3.6.1, 3.8.0 |
Other |
Sapelo2 |
|
WU |
2.2.6 |
Bioinformatics |
Sapelo |
|
WU |
2.2.6 |
Bioinformatics |
Sapelo2 |
|
wgs |
8.2 |
Bioinformatics |
Sapelo |
|
whatshap |
0.12 |
Bioinformatics |
Sapelo |
|
WinHap |
2.0 |
Bioinformatics |
Sapelo |
|
Xander_assembler |
7/12/2016 |
Bioinformatics |
Sapelo |
|
xforms |
1.2.4 |
Graphics |
Sapelo2 |
|
YAHA |
0.1.83 |
Bioinformatics |
Sapelo |
|
YASRA |
2.33 |
Bioinformatics |
Sapelo |
|
YASRA |
2.33 |
Bioinformatics |
Sapelo2 |
|
yt |
3.2.3 |
Other |
Sapelo |
|
Zbar |
0.10 |
Graphics |
Sapelo |
|
zlib |
1.2.5, 1.2.8 |
Library |
Sapelo |
|
[[ |
]] |
|
Category: |
Category: |
Category:
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[[|}]] |
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Category: |
Category: |
[[]]
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