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Installed Software List
Last updated 2018-08-10.
Note: Click on the icons to the right of the column headings to sort the table.
0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name
|
Version
|
Category
|
Cluster
|
|
| Artemis |
17.0.1 |
Bioinformatics |
Teaching |
|
| AUGUSTUS |
3.2.3 |
Bioinformatics |
Teaching |
|
| BCFtools |
1.8, 1.6, 1.3.1 |
Bioinformatics |
Teaching |
|
| BEDTools |
2.26.0 |
Bioinformatics |
Teaching |
|
| BioPerl |
1.7.1 |
Bioinformatics |
Teaching |
|
| Biopython |
1.68 |
Bioinformatics |
Teaching |
|
| BLAST |
2.2.26 |
Bioinformatics |
Teaching |
|
| BLAST+ |
2.6.0 |
Bioinformatics |
Teaching |
|
| Bowtie2 |
2.3.4.1, 2.3.3, 2.2.3 |
Bioinformatics |
Teaching |
|
| BWA |
0.7.17, 0.7.15 |
Bioinformatics |
Teaching |
|
| Canu |
1.7, 1.6, 1.5, 1.4 |
Bioinformatics |
Teaching |
|
| Cufflinks |
2.2.1 |
Bioinformatics |
Teaching |
|
| DBG2OLC |
20170208 |
Bioinformatics |
Teaching |
|
| EMBOSS |
6.6.0 |
Bioinformatics |
Teaching |
|
| GAG |
2.0.1 |
Bioinformatics |
Teaching |
|
| GapFiller |
2.1.1 |
Bioinformatics |
Teaching |
|
| GATK |
3.8-0, 3.4-0 |
Bioinformatics |
Teaching |
|
| GeneMarkES |
4.33 |
Bioinformatics |
Teaching |
|
| Java |
1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92 |
Programming |
Teaching |
|
| MAFFT |
7.313, 7.273, 7.130 |
Bioinformatics |
Teaching |
|
| MUMmer |
3.23 |
Bioinformatics |
Teaching |
|
| OrthoFinder |
2.1.2 |
Bioinformatics |
Teaching |
|
| PAML |
4.9h |
Bioinformatics |
Teaching |
|
| Perl |
5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 |
Programming |
Teaching |
|
| Picard |
2.16.0 |
Bioinformatics |
Teaching |
|
| Pilon |
1.22 |
Bioinformatics |
Teaching |
|
| Proovread |
2.14.1 |
Bioinformatics |
Teaching |
|
| Python |
3.6.4, 3.5.2, 2.7.14, 2.7.12 |
Programming |
Teaching |
|
| RAxML |
8.2.11 |
Bioinformatics |
Teaching |
|
| RepeatMasker |
4.0.7 |
Bioinformatics |
Teaching |
|
| RepeatModeler |
1.0.11 |
Bioinformatics |
Teaching |
|
| RepeatScout |
1.05 |
Bioinformatics |
Teaching |
|
| SAMtools |
1.6, 1.3.1, 0.1.19 |
Bioinformatics |
Teaching |
|
| SMRTLINK |
5.1.0.26412, 5.0.1.9585 |
Bioinformatics |
Teaching |
|
| SNAP-Zoe |
20060728 |
Bioinformatics |
Teaching |
|
| SnpEff |
4.3t |
Bioinformatics |
Teaching |
|
| SOAPdenovo2 |
r240 |
Bioinformatics |
Teaching |
|
| SPAdes |
3.11.1 |
Bioinformatics |
Teaching |
|
| Stacks |
2.0, 1.48 |
Bioinformatics |
Teaching |
|
| STAR |
2.6.0c, 2.5.3a |
Bioinformatics |
Teaching |
|
| TopHat |
2.1.1 |
Bioinformatics |
Teaching |
|
| Trinity |
2.6.6 |
Bioinformatics |
Teaching |
|
| VCFtools |
0.1.15 |
Bioinformatics |
Teaching |
|
| Zbar |
0.10 |
Graphics |
Sapelo |
|
| zlib |
1.2.5, 1.2.8 |
Library |
Sapelo |
|
| Zorro |
2.2 |
Bioinformatics |
Zcluster |
|
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