Installed Software List
Last updated 2018-08-09.
Note: Click on the icons to the right of the column headings to sort the table.
0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| Name
|
Version
|
Category
|
Cluster
|
|
| -Teaching |
|
[[:Category:|Category:]] |
Teaching |
|
| BCFtools |
1.8 , 1.6, 1.3.1 |
Bioinformatics |
Teaching |
|
| Biopython |
1.68 |
Bioinformatics |
Teaching |
|
| Biopython |
|
Bioinformatics |
Teaching |
|
| Bowtie2 |
2.3.4.1 , 2.3.3, 2.2.3 |
Bioinformatics |
Teaching |
|
| BWA |
0.7.17 , 0.7.15 |
Bioinformatics |
Teaching |
|
| Canu |
1.7 , 1.6, 1.5, 1.4, 1.7 |
Bioinformatics |
Teaching |
|
| GATK |
3.8-0 , 3.4-0 |
Bioinformatics |
Teaching |
|
| Java |
1.8.0_144 , 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92 |
Programming |
Teaching |
|
| MAFFT |
7.313 , 7.273, 7.130 |
Bioinformatics |
Teaching |
|
| Perl |
5.26.1 , 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3 |
Programming |
Teaching |
|
| Python |
3.6.4 , 3.5.2, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.12 |
Programming |
Teaching |
|
| RAxML |
8.2.11 , 8.2.11 |
Bioinformatics |
Teaching |
|
| SAMtools |
1.6 , 1.3.1, 1.3.1, 0.1.19 |
Bioinformatics |
Teaching |
|
| SMRTLINK |
5.1.0.26412 , 5.0.1.9585 |
Bioinformatics |
Teaching |
|
| Stacks |
2.0 , 1.48 |
Bioinformatics |
Teaching |
|
| STAR |
2.6.0c , 2.5.3a |
Bioinformatics |
Teaching |
|
| Zbar |
0.10 |
Graphics |
Sapelo |
|
| zlib |
1.2.5, 1.2.8 |
Library |
Sapelo |
|
| Zorro |
2.2 |
Bioinformatics |
Zcluster |
|
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