Name
|
Version
|
Category
|
Cluster
|
|
aaarf |
1.0.0 |
Bioinformatics |
Zcluster |
|
ABINIT |
6.12.1 |
Chemistry |
Zcluster |
|
ABySS |
1.9.0 |
Bioinformatics |
Sapelo |
|
ABySS |
1.9.0 |
Bioinformatics |
Zcluster |
|
ACT |
03/27/2013 |
Bioinformatics |
Zcluster |
|
ADMIXTOOLS |
1.1 |
Bioinformatics |
Zcluster |
|
Admixture |
1.22 |
Bioinformatics |
Zcluster |
|
aeneas |
1.7.3 |
Other |
Sapelo |
|
AFNI |
2013.04.26 |
Other |
Zcluster |
|
AGE |
0.4 |
Bioinformatics |
Sapelo |
|
Allmaps |
0.6.6 |
Bioinformatics |
Sapelo |
|
ALLPATHS-LG |
47907 |
Bioinformatics |
Zcluster |
|
AMBER |
14 |
Chemistry |
Sapelo |
|
AMBER |
11, 12, 14 |
Chemistry |
Zcluster |
|
amos |
3.1.0 |
Bioinformatics |
Sapelo |
|
amos |
3.1.0 |
Bioinformatics |
Zcluster |
|
AmpliconNoise |
1.25 |
Bioinformatics |
Zcluster |
|
Anaconda |
2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 |
Programming |
Sapelo |
|
Anaconda |
2.3.0, 2.5.0, 3-2.2.0 |
Programming |
Zcluster |
|
Anaconda2 |
4.2.0, 4.3.0, 4.4.0 |
Programming |
Sapelo |
|
Anaconda3 |
4.2.0, 4.3.0, 5.0.0 |
Programming |
Sapelo |
|
Anduril |
1.2.23 |
Bioinformatics |
Zcluster |
|
ANI |
2.0 |
Bioinformatics |
Sapelo |
|
ANNOgesic |
0.6.17 |
Bioinformatics |
Sapelo |
|
ANNOVAR |
2015Mar22 |
Bioinformatics |
Zcluster |
|
ANSYS |
16.2 |
Engineering |
Sapelo |
|
apache-ant |
1.9.6 |
Other |
Sapelo |
|
ARB |
6.0.2 |
Bioinformatics |
Zcluster |
|
ARC |
1.1.4-beta |
Bioinformatics |
Sapelo |
|
Arlequin |
3.5.1.3 |
Bioinformatics |
Zcluster |
|
ART |
20160605 |
Bioinformatics |
Sapelo |
|
Aspera |
3.1.0.67054 |
Other |
Zcluster |
|
AStalavista |
3.2 |
Bioinformatics |
Sapelo |
|
Atlas2 |
1.4.3 r158 |
Bioinformatics |
Zcluster |
|
augustus |
3.2.3 |
Bioinformatics |
Sapelo |
|
AUGUSTUS |
3.2.3 |
Bioinformatics |
Zcluster |
|
BAGEL |
2016.12.14, 2017.02.13 |
Chemistry |
Sapelo |
|
BaitsTools |
1.0 |
Bioinformatics |
Sapelo |
|
bam-readcount |
0.8.0 |
Bioinformatics |
Sapelo |
|
BamBam |
1.4 |
Bioinformatics |
Zcluster |
|
bam2fastq |
1.1.0 |
Bioinformatics |
Zcluster |
|
Bamtools |
2.4.0 |
Bioinformatics |
Sapelo |
|
BamTools |
2.4.1 |
Bioinformatics |
Sapelo2 |
|
Banjo |
2.2.0 |
Bioinformatics |
Zcluster |
|
basespace-cli |
0.8.10 |
Bioinformatics |
Sapelo |
|
Batchsub |
1.0 |
Bioinformatics |
Zcluster |
|
BayeScan |
2.1 |
Bioinformatics |
Zcluster |
|
Bazel |
0.4.5 |
Other |
Sapelo |
|
BBMap |
35.82 |
Bioinformatics |
Sapelo |
|
BBMap |
37.67 |
Bioinformatics |
Sapelo2 |
|
BBMap |
35.66 |
Bioinformatics |
Zcluster |
|
bcftools |
1.6 |
Bioinformatics |
Sapelo |
|
bcl2fastq |
2.17.1.14 |
Bioinformatics |
Sapelo |
|
bcl2fastq |
1.8.4, 2.16.0.10, 2.17.1.14 |
Bioinformatics |
Zcluster |
|
bcl2fastq-brwnj |
10262015 |
Bioinformatics |
Zcluster |
|
BEAST |
2.4.1 |
Bioinformatics |
Sapelo |
|
Beast |
2.4.8pre |
Bioinformatics |
Sapelo2 |
|
BEAST |
2.4.1 |
Bioinformatics |
Zcluster |
|
BEDops |
2.4.14 |
Bioinformatics |
Sapelo |
|
BEDops |
2.4.20 |
Bioinformatics |
Zcluster |
|
BEDTools |
2.24.0, 2.25.0 2.26.0 |
Bioinformatics |
Sapelo |
|
BEDTools |
2.26.0 |
Bioinformatics |
Sapelo2 |
|
BEDTools |
2.24.0, 2.25.0 |
Bioinformatics |
Zcluster |
|
BLAST+ |
2.6.0 |
Bioinformatics |
Sapelo2 |
|
BLAST |
2.2.26 |
Bioinformatics |
Sapelo2 |
|
BEST |
2.3.1 |
Bioinformatics |
Sapelo |
|
BEST |
2.3.1 |
Bioinformatics |
Zcluster |
|
bfast |
0.7.0 |
Bioinformatics |
Zcluster |
|
BiBench |
0.2 |
[[:Category:Bioinformatics|Bioinformatics] |
Sapelo |
|
Bio++ Program Suite |
2.2.0 |
Bioinformatics |
Zcluster |
|
bioawk |
1.0 |
[[:Category:Bioinformatics|Bioinformatics] |
Sapelo |
|
Bioconductor |
2.11, 2.13 |
Bioinformatics |
Zcluster |
|
BioPerl |
1.6.923 |
Bioinformatics |
Sapelo |
|
BioPerl |
1.7.1 |
Bioinformatics |
Sapelo2 |
|
BioPerl |
1.61 |
Bioinformatics |
Zcluster |
|
biopy |
0.1.8 |
Bioinformatics |
Zcluster |
|
BioPython |
1.66 |
Bioinformatics |
Sapelo |
|
BioPython |
1.68 |
Bioinformatics |
Sapelo2 |
|
BioPython |
1.64 |
Bioinformatics |
Zcluster |
|
biotoolbox |
1.22 |
Bioinformatics |
Zcluster |
|
Bismark |
0.16.3 |
Bioinformatics |
Sapelo |
|
Bismark Bisulfite Mapper |
0.14.0 |
Bioinformatics |
Zcluster |
|
BiSS |
0.0.1 |
Bioinformatics |
Zcluster |
|
BLAS |
3.0 |
Math Library |
Zcluster |
|
BLASR |
1.3.1 |
Bioinformatics |
Zcluster |
|
Blast2lca |
0.8 |
Bioinformatics |
Sapelo |
|
Blat |
36 |
Bioinformatics |
Sapelo |
|
Blat |
3.5 |
Bioinformatics |
Zcluster |
|
BMGE |
1.1 |
Bioinformatics |
Zcluster |
|
Boost |
1.47.0, 1.57.0, 1.59.0 |
Library |
Sapelo |
|
Boost |
1.54.0 |
Library |
Zcluster |
|
bowtie |
1.1.1 |
Bioinformatics |
Sapelo |
|
bowtie |
1.1.0 |
Bioinformatics |
Zcluster |
|
bowtie2 |
2.2.4 |
Bioinformatics |
Sapelo |
|
bowtie2 |
2.3.3 |
Bioinformatics |
Sapelo2 |
|
bowtie2 |
2.2.3, 2.2.9 |
Bioinformatics |
Zcluster |
|
BP&P |
4.0 |
Bioinformatics |
Sapelo |
|
BP&P |
2.2, 3, 3.1, 3.2 |
Bioinformatics |
Zcluster |
|
breakdancer |
1.1.2_2013_03_08 |
Bioinformatics |
Sapelo |
|
BreakDancer |
1.4.5-foss-2016b |
Bioinformatics |
Sapelo2 |
|
breakdancer |
1.1.2_2013_03_08 |
Bioinformatics |
Zcluster |
|
bridger |
2014-12-01 |
Bioinformatics |
Zcluster |
|
brownie |
2.1.2 |
Bioinformatics |
Zcluster |
|
BS Seeker |
Dec 113 |
Bioinformatics |
Zcluster |
|
BS Seeker2 |
2.1.1 |
Bioinformatics |
Sapelo |
|
BS Seeker2 |
2.1.1 |
Bioinformatics |
Zcluster |
|
BUCKy |
1.4.3 |
Bioinformatics |
Zcluster |
|
BUSCO |
3.0.2 |
Bioinformatics |
Sapelo |
|
Burrows-Wheeler Aligner (BWA) |
0.7.10, 0.7.15 |
Bioinformatics |
Sapelo |
|
Burrows-Wheeler Aligner (BWA) |
0.7.10 |
Bioinformatics |
Zcluster |
|
bx-python |
06/24/2013 |
Bioinformatics |
Zcluster |
|
cadaver |
0.23.3 |
Bioinformatics |
Zcluster |
|
Cafe |
3.1 |
Bioinformatics |
Zcluster |
|
Caffe |
12.04.2015 |
Other |
Sapelo |
|
Caffe |
11.26.2014 |
Other |
Zcluster |
|
Cairo |
1.10.0 |
Bioinformatics |
Sapelo |
|
canu |
1.4 |
Bioinformatics |
Sapelo |
|
Canu |
1.4 |
Bioinformatics |
Zcluster |
|
CAP-miRSeq |
01/2014 |
Bioinformatics |
Zcluster |
|
cap3 |
03/09/2015 |
Bioinformatics |
Sapelo |
|
cap3 |
10/2011 |
Bioinformatics |
Zcluster |
|
casava |
1.8.2 |
Bioinformatics |
Zcluster |
|
cblas |
3.0 |
Math Library |
Zcluster |
|
cdhit |
4.6.7 |
Bioinformatics |
Sapelo |
|
cd-hit |
4.6.1 |
Bioinformatics |
Zcluster |
|
cdbfasta |
04282012 |
Bioinformatics |
Zcluster |
|
cdbtools |
06172013 |
Bioinformatics |
Zcluster |
|
CDNA_Cupcake |
3.9 |
Bioinformatics |
Sapelo |
|
CEAS |
1.0.2 |
Bioinformatics |
Zcluster |
|
CEGMA |
2.5 |
Bioinformatics |
Zcluster |
|
celera |
8.1 |
Bioinformatics |
Zcluster |
|
CellProfiler |
2.2.0 |
Bioinformatics |
Sapelo |
|
censor |
4.2.29 |
Bioinformatics |
Sapelo |
|
Centrifuge |
2.3.2 |
Bioinformatics |
Sapelo |
|
CFOUR |
1.2, 2.00-beta |
Chemistry |
Sapelo |
|
CFOUR |
beta, 1.2 |
Chemistry |
Zcluster |
|
CGAT |
0.2.4 |
Bioinformatics |
Sapelo |
|
CGmapTools |
0.0.3b |
Bioinformatics |
Sapelo |
|
CheckM |
1.0.5 |
Bioinformatics |
Sapelo |
|
CheckM |
1.0.5 |
Bioinformatics |
Zcluster |
|
Check |
0.10.0 |
Programming |
Sapelo |
|
ChromHMM |
1.0 |
Bioinformatics |
Zcluster |
|
Chromosomer |
0.1.4a |
Bioinformatics |
Sapelo |
|
CIRCexplorer2 |
2.2.3 |
Bioinformatics |
Sapelo |
|
circlator |
1.4.1 |
Bioinformatics |
Sapelo |
|
circoletto |
21.10.13 |
Bioinformatics |
Zcluster |
|
circos |
0.69 |
Bioinformatics |
Sapelo |
|
Circos |
0.69-6 |
Bioinformatics |
Sapelo2 |
|
circos |
0.64 |
Bioinformatics |
Zcluster |
|
cisa |
20140304 |
Bioinformatics |
Sapelo |
|
cisgenome |
2.0 |
Bioinformatics |
Zcluster |
|
CLAPACK |
3.2.1 |
Math Library |
Zcluster |
|
cleaveland4 |
4.4 |
Bioinformatics |
Sapelo |
|
CLUMPP |
1.1.2 |
Bioinformatics |
Zcluster |
|
Clustal-Omega |
1.2.1 |
Bioinformatics |
Zcluster |
|
ClustalW |
1.83 |
Bioinformatics |
Sapelo |
|
ClustalW2 |
2.1 |
Bioinformatics |
Sapelo2 |
|
ClustalW |
2.1 |
Bioinformatics |
Zcluster |
|
CLUSTER |
3.0 |
Bioinformatics |
Zcluster |
|
clusteringConsensus |
1.02 |
Bioinformatics |
Sapelo |
|
cmake |
2.8.12.2, 3.0.2, 3.7.2, 3.9.3 |
Other |
Sapelo |
|
CMake |
3.8.0 |
Other |
Sapelo2 |
|
cnv-seq |
03132017 |
Bioinformatics |
Sapelo |
|
CNVnator |
0.3.3 |
Bioinformatics |
Sapelo |
|
CNVnator |
0.3.3 |
Bioinformatics |
Sapelo2 |
|
CNVnator |
0.2.7 |
Bioinformatics |
Zcluster |
|
cnv-seq |
0.2-7 |
Bioinformatics |
Zcluster |
|
Coding Potential Calculator |
0.9-r2 |
Bioinformatics |
Zcluster |
|
CoMap |
1.4.1 |
Bioinformatics |
Zcluster |
|
Conclustador |
0.4a |
Bioinformatics |
Zcluster |
|
Consed |
28.0 |
Bioinformatics |
Zcluster |
|
CONSEL |
0.20 |
Bioinformatics |
Sapelo |
|
CONSEL |
v0.20 |
Bioinformatics |
Zcluster |
|
Conspred |
v1.32 |
Bioinformatics |
Sapelo |
|
CORMA |
5.21 |
Chemistry |
Zcluster |
|
cortex_con |
0.04c |
Bioinformatics |
Zcluster |
|
cortex_var |
1.0.5.21 |
Bioinformatics |
Sapelo |
|
cortex_var |
1.0.5.3 |
Bioinformatics |
Zcluster |
|
Count |
2010-04-02 |
Bioinformatics |
Zcluster |
|
CPLEX |
12.6.3 |
Engineering |
Sapelo |
|
CRB-BLAST |
0.3.2 |
Bioinformatics |
Zcluster |
|
CREST |
1.0 |
Bioinformatics |
Zcluster |
|
Croco_tools |
1.0 |
Other |
Sapelo |
|
CrossMap |
0.2.5 |
Bioinformatics |
Sapelo |
|
CrossMap |
0.1.5 |
Bioinformatics |
Zcluster |
|
ctrax |
0.3.2 |
Other |
Zcluster |
|
CUDA |
5.0.35, 6.5.14, 7.5.18, 8.0.61 |
Programming |
Sapelo |
|
CUDA |
7.0.28, 7.5.18, 8.0.61, 8.0.61_375.26-GCC-5.4.0-2.26, 9.0.176 |
Programming |
Sapelo2 |
|
CUDA |
4.0.17, 4.2.9, 5.0.35, 6.0.37, 6.5.14 |
Programming |
Zcluster |
|
cufflinks |
2.2.1 |
Bioinformatics |
Sapelo |
|
Cufflinks |
2.2.1 |
Bioinformatics |
Sapelo2 |
|
cufflinks |
2.2.1 |
Bioinformatics |
Zcluster |
|
curl |
7.15.5, 7.47.1 |
Other |
Zcluster |
|
cURL |
7.49.1 |
Other |
Sapelo2 |
|
Cutadapt |
1.14 |
Bioinformatics |
Sapelo |
|
cutadapt |
1.9.1 |
Bioinformatics |
Sapelo2 |
|
cutadapt |
1.9.dev1 |
Bioinformatics |
Zcluster |
|
cv2 |
3.3.0.10 |
Other |
Sapelo |
|
CWEB |
3.64 |
Other |
Zcluster |
|
CytoScape |
3.3.0 |
Bioinformatics |
Sapelo |
|
Danpos2 |
2.2.2 |
Bioinformatics |
Sapelo |
|
Danpos2 |
2.2.2 |
Bioinformatics |
Zcluster |
|
datamash |
1.0.7 |
Other |
Sapelo |
|
datamash |
1.0.6 |
Other |
Zcluster |
|
Davinci |
2.09 |
Bioinformatics |
Zcluster |
|
DBG2OLC |
04062015 |
Bioinformatics |
Zcluster |
|
ddocent |
2.2.16 |
Bioinformatics |
Sapelo |
|
ddRADseq |
0.01 |
Bioinformatics |
Zcluster |
|
DeconSeq |
0.4.3 |
Bioinformatics |
Sapelo |
|
DeconSeq |
0.4.3 |
Bioinformatics |
Zcluster |
|
deepnet |
20151013 |
Other |
Sapelo |
|
deepnet |
20150820 |
Other |
Zcluster |
|
deeptools |
2.3.1 |
Bioinformatics |
Sapelo |
|
deeptools |
2.4.1 |
Bioinformatics |
Zcluster |
|
DELLY |
0.7.7 |
Bioinformatics |
Sapelo |
|
DELLY |
0.5.5 |
Bioinformatics |
Zcluster |
|
demuxipy |
1.0 |
Bioinformatics |
Zcluster |
|
dendropy |
3.12.0 |
Bioinformatics |
Sapelo |
|
depict |
140721 |
Bioinformatics |
Sapelo |
|
detect-NAHR |
2015.09.16 |
Bioinformatics |
Sapelo |
|
DETONATE |
20140123 |
Bioinformatics |
Zcluster |
|
DIAMOND |
0.8.36 |
Bioinformatics |
Sapelo |
|
DIAMOND |
0.8.36 |
Bioinformatics |
Zcluster |
|
DISCOVAR |
49856 |
Bioinformatics |
Zcluster |
|
DISCOVAR De Novo |
52488 |
Bioinformatics |
Zcluster |
|
Distruct |
2.2 |
Bioinformatics |
Zcluster |
|
diyabc |
2.0.4 |
Bioinformatics |
Zcluster |
|
DLCoal |
1.0 |
Bioinformatics |
Zcluster |
|
DLCpar |
1.0 |
Bioinformatics |
Sapelo |
|
dnaclust |
rev54 |
Bioinformatics |
Zcluster |
|
dnasam |
20100621 |
Bioinformatics |
Zcluster |
|
dDocent |
1.2 |
Bioinformatics |
Zcluster |
|
drmma |
0.5 |
Other |
Zcluster |
|
ea-utils |
1.1.2-822 |
Bioinformatics |
Zcluster |
|
eclipse |
4.3.1 |
Other, Programming |
Zcluster |
|
ECTools |
08/18/2014 |
Other, Programming |
Zcluster |
|
edena |
v3.130110 |
Bioinformatics |
Zcluster |
|
EDGE-pro |
1.3.1 |
Bioinformatics |
Zcluster |
|
editag |
1.1 |
Bioinformatics |
Zcluster |
|
EMBOSS |
6.5.7 |
Bioinformatics |
Sapelo |
|
EMBOSS |
6.5.7 |
Bioinformatics |
Zcluster |
|
emirge |
0.61.1 |
Bioinformatics |
Sapelo |
|
emirge |
0.61.1 |
Bioinformatics |
Zcluster |
|
emmax |
beta-07Mar2010 |
Bioinformatics |
Zcluster |
|
emmix |
1.3 |
Bioinformatics |
Zcluster |
|
EIGENSOFT |
7.2.1 |
Bioinformatics |
Zcluster |
|
ensembl-tools |
76 |
Bioinformatics |
Zcluster |
|
Entrez-Direct |
11/18/2016 |
Bioinformatics |
Zcluster |
|
EPIG-Seq |
v01 |
Bioinformatics |
Sapelo |
|
espeak |
1.48.04 |
Other |
Sapelo |
|
ESTscan |
3.0.3 |
Bioinformatics |
Zcluster |
|
evm (EVidenceModeler) |
r2012-06-25 |
Bioinformatics |
Zcluster |
|
exabayes |
1.4.1 |
Bioinformatics |
Sapelo |
|
exabayes |
1.2.1 |
Bioinformatics |
Zcluster |
|
ExaML |
3.0.11 |
Bioinformatics |
Sapelo |
|
ExaML |
315576 |
Bioinformatics |
Zcluster |
|
exonerate |
2.2.0 |
Bioinformatics |
Sapelo |
|
exonerate |
2.2.0 |
Bioinformatics |
Zcluster |
|
Expander |
7.11 |
Bioinformatics |
Sapelo |
|
express |
1.5.1 |
Bioinformatics |
Zcluster |
|
FALCON |
0.4.0 |
Bioinformatics |
Sapelo |
|
FALCON |
0.4.0 |
Bioinformatics |
Zcluster |
|
FAR |
2.15 |
Bioinformatics |
Zcluster |
|
FASTA |
36 |
Bioinformatics |
Zcluster |
|
FASTA |
36.3.5e |
Bioinformatics |
Sapelo2 |
|
fasta format cleaner |
1.0 |
Bioinformatics |
Zcluster |
|
FastME |
2.1.5 |
Bioinformatics |
Sapelo |
|
FastME |
2.1.5 |
Bioinformatics |
Sapelo2 |
|
fastphase |
1.4.0 |
Bioinformatics |
Sapelo |
|
fastphase |
1.4.0 |
Bioinformatics |
Zcluster |
|
FastPlast |
1.2.6 |
Bioinformatics |
Sapelo |
|
FastQC |
0.11.4 |
Bioinformatics |
Sapelo |
|
FastQC |
0.11.5 |
Bioinformatics |
Sapelo2 |
|
FastQC |
0.11.4 |
Bioinformatics |
Zcluster |
|
FASTQSim |
3.0 |
Bioinformatics |
Sapelo |
|
fastStructure |
1.0 |
Bioinformatics |
Sapelo |
|
fastStructure |
1.0 |
Bioinformatics |
Zcluster |
|
FastTree |
2.1.8 |
Bioinformatics |
Zcluster |
|
FastX |
0.0.13.2, 0.0.14 |
Bioinformatics |
Sapelo |
|
FastX |
0.0.13.2, 0.0.14 |
Bioinformatics |
Zcluster |
|
FastUniq |
1.1 |
Bioinformatics |
Zcluster |
|
FCP |
1.0.4 |
Bioinformatics |
Zcluster |
|
fc_squared |
20160404 |
Chemistry |
Zcluster |
|
FFmpeg |
2.8.2 |
Other |
Sapelo |
|
FFmpeg |
0.10.2 |
Other |
Zcluster |
|
FFTbor |
11.21.2014 |
Bioinformatics |
Zcluster |
|
FFTW |
2.1.5, 3.3.4 |
Math Library |
Sapelo |
|
FFTW |
2.1.5, 3.3.0, 3.3.3 |
Math Library |
Zcluster |
|
Fiji |
2015/12/09 |
Bioinformatics |
Zcluster |
|
Find_Cns |
2016/07/21 |
Bioinformatics |
Sapelo |
|
fineRADstructure |
2016/12/09 |
Bioinformatics |
Sapelo |
|
FineSTRUCTURE |
2.0.7 |
Bioinformatics |
Sapelo |
|
FIRE |
1.1 |
Bioinformatics |
Zcluster |
|
FitModel |
20140407 |
Bioinformatics |
Zcluster |
|
FLASH |
1.2.11 |
Bioinformatics |
Sapelo |
|
FLASH |
1.2.11 |
Bioinformatics |
Sapelo2 |
|
FLASH |
1.2.11 |
Bioinformatics |
Zcluster |
|
Flexbar |
2.4 |
Bioinformatics |
Zcluster |
|
FragStats |
2.0 |
Other |
Zcluster |
|
Freebayes |
1.0.1 |
Bioinformatics |
Sapelo |
|
Freebayes |
1.0.0 |
Bioinformatics |
Zcluster |
|
FreeSurfer |
6.0.0 |
Medical-Informatics |
Sapelo |
|
F-Seq |
1.84 |
Bioinformatics |
Zcluster |
|
Fsl |
5.0.4 |
Bioinformatics |
Zcluster |
|
gam-ngs |
1.1b |
Bioinformatics |
Sapelo |
|
gam-ngs |
10/8/2013 |
Bioinformatics |
Zcluster |
|
GAMESS |
5Dec2014 |
Chemistry |
Sapelo |
|
GAMESS |
May2012R1 with XMVB 2.0, May2013R1, 5Dec2014 |
Chemistry |
Zcluster |
|
GAP |
4.8.7 |
Other, Programming |
Sapelo |
|
GapFiller |
2.1.1 |
Bioinformatics |
Sapelo |
|
GapFiller |
1.11 |
Bioinformatics |
Zcluster |
|
garli |
2.01 |
Bioinformatics |
Zcluster |
|
gat |
1.2 |
Bioinformatics |
Sapelo |
|
gatk |
3.6 |
Bioinformatics |
Sapelo |
|
GATK |
3.8.0 |
Bioinformatics |
Sapelo2 |
|
gatk |
3.6 |
Bioinformatics |
Zcluster |
|
gatk_lite |
2.3.9 |
Bioinformatics |
Sapelo |
|
GAUSSIAN |
09 |
Chemistry |
Sapelo |
|
GAUSSIAN09 |
09 |
Chemistry |
Zcluster |
|
GaussView |
5 |
Chemistry |
Sapelo |
|
GaussView |
5 |
Chemistry |
Zcluster |
|
Gblocks |
0.91b |
Bioinformatics |
Sapelo |
|
Gblocks |
0.91b |
Bioinformatics |
Zcluster |
|
GBSX |
1.1.4 |
Bioinformatics |
Zcluster |
|
GCTA |
1.26.0 |
Bioinformatics |
Sapelo |
|
gdal |
2.1.0 |
Library |
Sapelo |
|
gdal |
1.9.2 |
Library |
Zcluster |
|
GDB |
7.0.1 |
Debugger |
Zcluster |
|
GDC-client |
1.0.1 |
Bioinformatics |
Sapelo |
|
GDC-client |
1.0.1 |
Bioinformatics |
Zcluster |
|
gd |
2.2.4 |
Bioinformatics |
Sapelo |
|
GEM |
2.5 |
Bioinformatics |
Sapelo |
|
GEM |
2.5 |
Bioinformatics |
Zcluster |
|
GEMMA |
0.95alpha |
Bioinformatics |
Zcluster |
|
Gemini |
0.20.0 |
Bioinformatics |
Sapelo |
|
GeneMark |
4.21 |
Bioinformatics |
Zcluster |
|
GeneMark-ES |
4.33 |
Bioinformatics |
Sapelo |
|
Gengetopt |
2.22 |
Other |
Sapelo |
|
GenomeTools |
1.5.9 |
Bioinformatics |
Sapelo |
|
Genome |
Phred version: 0.071220.c |
Bioinformatics |
Zcluster |
|
GenomeMapper |
0.4.4 (Version for SHORE/WMD3) |
Bioinformatics |
Zcluster |
|
GenomeTools |
1.5.9 |
Bioinformatics |
Sapelo |
|
GenomeTools |
1.5.1 |
Bioinformatics |
Zcluster |
|
GenomicConsensus |
0.9.0 |
Bioinformatics |
Zcluster |
|
gensim |
2.3.0 |
Library |
Sapelo |
|
geos |
3.5.0 |
Library |
Sapelo |
|
geos |
3.3.3, 3.4.2 |
Library |
Zcluster |
|
Gerud3 |
12202017 |
Bioinformatics |
Sapelo |
|
gff3ToGenePred |
1.0 |
Bioinformatics |
Sapelo |
|
Gimmemotifs |
0.10.0b4 |
Bioinformatics |
Zcluster |
|
Gingr |
1.0 |
Other |
Zcluster |
|
git |
1.7.1, 2.7.0 |
Other |
Sapelo |
|
git |
1.7.6, 1.7.11.3, 2.0.0 |
Other |
Zcluster |
|
GKIN |
1.1 |
Bioinformatics |
Sapelo |
|
GKIN |
1.1 |
Bioinformatics |
Zcluster |
|
Glimmer |
3.0.2 |
Bioinformatics |
Zcluster |
|
GlimmerHMM |
3.0.1 |
Bioinformatics |
Zcluster |
|
gmap-gsnap |
2017-01-14 |
Bioinformatics |
Sapelo |
|
GMAP-GSNAP |
2016-11-07 |
Bioinformatics |
Sapelo2 |
|
gmap-gsnap |
2014-12-14 |
Bioinformatics |
Zcluster |
|
GMA |
0.1.5 |
Bioinformatics |
Sapelo |
|
GMATA |
2017-01-14 |
Bioinformatics |
Sapelo |
|
GMP |
4.3.1, 6.0.0 |
Library |
Sapelo |
|
GMPFRXX |
20081116 |
Library |
Sapelo |
|
GNU Compilers |
4.4.7, 4.7.4, 5.3.0 |
Compiler |
Sapelo |
|
GNU Compilers |
4.1.2, 4.4.7, 4.5.3, 4.7.1, 5.3.0 |
Compiler |
Zcluster |
|
GNUMAP |
3.0.2 |
Bioinformatics |
Zcluster |
|
gnuplot |
4.2.6 |
Bioinformatics |
Sapelo |
|
gnuplot |
4.0, 4.6.0 |
Graphics |
Zcluster |
|
gprof |
2.17 |
Profiler |
Zcluster |
|
gpu-blast |
1.1 with ncbi-blast-2.2.25+ |
Bioinformatics |
Zcluster |
|
grace |
5.1.25 |
Graphics |
Sapelo |
|
grace |
5.1.22 |
Graphics |
Zcluster |
|
GrADS |
2.1a3 |
Other |
Sapelo |
|
GraftM |
0.10.1 |
Bioinformatics |
Sapelo |
|
GraPhlAn |
0.9.7 |
Graphics |
Zcluster |
|
Graphviz |
2.40.1 |
Other |
Sapelo |
|
Gromacs |
5.0.2, 5.1.3 |
Chemistry |
Sapelo |
|
Gromacs |
4.5.5, 4.6.1 |
Chemistry |
Zcluster |
|
GSL |
1.16 |
Math Library |
Sapelo |
|
GSL |
1.9, 1.15, 1.16 |
Math Library |
Zcluster |
|
gss |
|
Bioinformatics |
Zcluster |
|
h5py |
2.6.0 |
Other |
Sapelo |
|
hapcut2 |
20170126 |
Bioinformatics |
Sapelo |
|
Haplomerger2 |
20151124 |
Bioinformatics |
Zcluster |
|
Haploview |
4.2 |
Bioinformatics |
Sapelo |
|
Hapmix |
2 |
Bioinformatics |
Zcluster |
|
harp |
130306_105556 |
Bioinformatics |
Sapelo |
|
HARP |
130306_105556 |
Bioinformatics |
Zcluster |
|
HDF5 |
1.8.6, 1.8.14 |
Library |
Sapelo |
|
HDF5 |
1.6.4, 1.8.9 |
Library |
Zcluster |
|
HGTFinder |
20170929 |
Bioinformatics |
Sapelo |
|
HH-suite |
3.0 |
Bioinformatics |
Sapelo |
|
HH-Suite |
2.0.16 |
Library |
Zcluster |
|
hic-pro |
2.8.0 |
Bioinformatics |
Sapelo |
|
HiCUP |
0.5.9 |
Bioinformatics |
Sapelo |
|
HINGE |
032717 |
Bioinformatics |
Sapelo |
|
HipMer |
0.9.4 |
Bioinformatics |
Sapelo |
|
HISAT2 |
2.1.0 |
Bioinformatics |
Sapelo |
|
HISAT2 |
2.1.0 |
Bioinformatics |
Sapelo2 |
|
Hmmer |
3.1b2 |
Bioinformatics |
Sapelo |
|
HMMER |
3.1b2 |
Bioinformatics |
Sapelo2 |
|
Hmmer |
3.1b1 |
Bioinformatics |
Zcluster |
|
Homer |
4.8 |
Bioinformatics |
Sapelo |
|
Homer |
4.8 |
Bioinformatics |
Zcluster |
|
hotspot |
5 |
Bioinformatics |
Zcluster |
|
htseq |
0.6.1p1 |
Bioinformatics |
Sapelo |
|
htseq |
0.5.3p3, 0.6.1p1 |
Bioinformatics |
Zcluster |
|
HUMAnN2 |
0.6.1 |
Bioinformatics |
Sapelo |
|
HyDe |
1.0 |
Bioinformatics |
Sapelo |
|
HyPhy |
2.3.5 |
Bioinformatics |
Sapelo |
|
HyPhy |
2.2.1 |
Bioinformatics |
Zcluster |
|
IDBA |
1.1.2 |
Bioinformatics |
Sapelo |
|
IDBA-UD |
1.1.1 |
Bioinformatics |
Zcluster |
|
igb |
6.7.3 |
Bioinformatics |
Zcluster |
|
igraph |
0.7.1 |
Bioinformatics |
Zcluster |
|
IGV |
2.3.81 |
Bioinformatics |
Sapelo |
|
IGV |
2.4.4 |
Bioinformatics |
Sapelo2 |
|
IGV |
2.1.23 |
Bioinformatics |
Zcluster |
|
IGVTools |
2.3.81 |
Bioinformatics |
Sapelo |
|
IGVTools |
2.3.98 |
Bioinformatics |
Sapelo2 |
|
IGVTools |
2.3.14 |
Bioinformatics |
Zcluster |
|
illumiprocessor |
2.0.7 |
Bioinformatics |
Sapelo |
|
IMa2 |
8.27.12 |
Bioinformatics |
Zcluster |
|
indel-Seq-Gen |
2.02 |
Bioinformatics |
Zcluster |
|
Infernal |
1.1.1 |
Bioinformatics |
Zcluster |
|
InStruct |
3.2.09 |
Bioinformatics |
Zcluster |
|
Intel Compilers |
14.0.0, 15.0.2 |
Compiler |
Sapelo |
|
Intel Compilers |
2013 SP1 |
Compiler |
Zcluster |
|
iprscan (InterProScan) |
5.16-55.0 |
Bioinformatics |
Sapelo |
|
iprscan (InterProScan) |
5.9-50.0 |
Bioinformatics |
Zcluster |
|
ipyrad |
0.3.7, 0.5.15, 0.7.3 |
Bioinformatics |
Sapelo |
|
IQ-Tree |
1.5.5, 1.6.1 |
Bioinformatics |
Sapelo |
|
IQ-Tree |
1.5.3 |
Bioinformatics |
Zcluster |
|
iRep |
1.10 |
Bioinformatics |
Sapelo |
|
iRODS |
4.2.0 |
Other |
Zcluster |
|
iscan |
1.0.0 |
Bioinformatics |
Zcluster |
|
I-TASSER |
5.0 |
Bioinformatics |
Sapelo |
|
IsoSeq_SA3nUP |
09272017 |
Bioinformatics |
Sapelo |
|
ITK |
3.20.1 |
Other |
Zcluster |
|
iva |
1.0.3 |
Bioinformatics |
Sapelo |
|
iva |
1.0.3 |
Bioinformatics |
Zcluster |
|
JAGS |
3.4.0, 4.1.0, 4.2.0 |
Statistics |
Sapelo |
|
JAGS |
3.3.0, 4.1.0 |
Statistics |
Zcluster |
|
JasPer |
1.900.1 |
Other |
Sapelo |
|
JasPer |
1.900.1 |
Other |
Zcluster |
|
Java |
6, 7, 8 |
Programming |
Sapelo |
|
Java |
6, 7, 8 |
Programming |
Zcluster |
|
Jellyfish |
2.2.3 |
Bioinformatics |
Sapelo |
|
Jellyfish |
2.2.6 |
Bioinformatics |
Sapelo2 |
|
Jellyfish |
2.1.1 |
Bioinformatics |
Zcluster |
|
JModelTest |
2.1.4 |
Bioinformatics |
Zcluster |
|
Julia |
0.3.0-beta, 0.3.3 |
Programming |
Zcluster |
|
Jupyter Notebook |
2.5.0 |
Programming |
Sapelo |
|
Jupyter Notebook |
2.5.0 |
Programming |
Zcluster |
|
k-link |
03 27, 2009 |
Bioinformatics |
Zcluster |
|
kallisto |
0.42.5 |
Bioinformatics |
Zcluster |
|
kallisto |
0.42.5 |
Bioinformatics |
Sapelo |
|
KAT |
2.3.4 |
Bioinformatics |
Sapelo |
|
Kat |
1.0.6 |
Bioinformatics |
Zcluster |
|
KentUtils |
302.1.0 |
Bioinformatics |
Sapelo |
|
keras |
1.0.8, 2.0.4 |
Other |
Sapelo |
|
keras |
1.0.8 |
Other |
zcluster |
|
KisSplice |
2.2.1 |
Bioinformatics |
Zcluster |
|
Kraken |
0.10.5-beta |
Bioinformatics |
Sapelo |
|
Kraken |
0.10.5-beta |
Bioinformatics |
Zcluster |
|
KmerGenie |
1.7016 |
Bioinformatics |
Sapelo |
|
KmerGenie |
1.5393 |
Bioinformatics |
Zcluster |
|
Lagrange |
20130526 |
Bioinformatics |
Zcluster |
|
LAMMPS |
16Aug13, 5Sep14, 10Aug15, 7Dec15, 16Feb16, 30Jul16, 17Nov16 |
Chemistry |
Sapelo |
|
LAMMPS |
23Sep13, 5Sep14, 10Aug15 |
Chemistry |
Zcluster |
|
LAPACK |
3.0, 3.4.2 |
Math Library |
Zcluster |
|
LAST |
719 |
Bioinformatics |
Sapelo |
|
LASTZ |
1.02.00, 1.03.73 |
Bioinformatics |
Sapelo |
|
LASTZ |
1.03.02 |
Bioinformatics |
Zcluster |
|
LCS |
1.0 |
Bioinformatics |
Zcluster |
|
LDDist |
1.3.2 |
Bioinformatics |
Zcluster |
|
LDhat |
2.2 |
Bioinformatics |
Sapelo |
|
LDhelmet |
1.7 |
Bioinformatics |
Sapelo |
|
LDhot |
0.4 |
Bioinformatics |
Sapelo |
|
LEfSe |
20160621 |
Bioinformatics |
Sapelo |
|
LEfSe |
20160621 |
Bioinformatics |
zcluster |
|
Lep-Map2 |
0.2 |
Bioinformatics |
Zcluster |
|
libradtran |
1.7, 2.0.1 |
Other |
Sapelo |
|
librosa |
0.4.3 |
Other |
Sapelo |
|
libsequence |
1.7.4 |
Bioinformatics |
Zcluster |
|
LIBSVM |
3.21 |
Other |
Sapelo |
|
LIBSVM |
3.17 |
Other |
Zcluster |
|
Lighter |
06192015 |
Bioinformatics |
Zcluster |
|
LLVM-Clang |
3.1 |
Compiler |
Zcluster |
|
lmod |
5.8 |
Other |
Sapelo |
|
LocARNA |
1.9.2 |
Bioinformatics |
Sapelo |
|
LoFreq |
2.1.2 |
Bioinformatics |
Sapelo |
|
LoFreq |
2.1.2 |
Bioinformatics |
Zcluster |
|
lsa |
11182011 |
Bioinformatics |
Zcluster |
|
LTR_retriever |
20170907 |
Bioinformatics |
Sapelo |
|
LUMPY |
0.2.13 |
Bioinformatics |
Sapelo |
|
LZO |
2.1.0 |
Bioinformatics |
Sapelo |
|
MACS2 |
2.1.1 |
Bioinformatics |
Sapelo |
|
macs |
1.4.2 |
Bioinformatics |
Zcluster |
|
macs2 |
2.1.0.20140616 |
Bioinformatics |
Zcluster |
|
MaCS-simulator |
0.5d |
Bioinformatics |
Sapelo |
|
Mafft |
7.273-e |
Bioinformatics |
Sapelo |
|
Mafft |
7.029-e |
Bioinformatics |
Zcluster |
|
mageck-vispr |
02242017 |
Bioinformatics |
Sapelo |
|
mageck |
0.5 |
Bioinformatics |
Sapelo |
|
Magma |
2.22-9 |
Other |
Sapelo |
|
Magma |
2.21-3 |
Other |
Zcluster |
|
Mahotas |
1.4.3 |
Bioinformatics |
Sapelo |
|
maker |
2.31.7 |
Bioinformatics |
Zcluster |
|
Make |
4.2 |
Programming |
Sapelo |
|
Maple |
16 |
Other, Programming, Graphics |
Zcluster |
|
MapSplice2 |
2.1.7 |
Bioinformatics |
Zcluster |
|
MAQ |
0.7.1 |
Bioinformatics |
Zcluster |
|
MARDIGRAS |
3.21 |
Chemistry |
Zcluster |
|
MaSuRCA |
3.1.3 |
Bioinformatics |
Sapelo |
|
MaSuRCA |
2.3.0 |
Bioinformatics |
Zcluster |
|
MATS |
3.0.9 |
Bioinformatics |
Zcluster |
|
Mathematica |
9.0 (currently not available) |
Other, Programming , Graphics |
Zcluster |
|
Matlab |
R2015aSP1, R2015b, R2016b |
Other, Programming, Graphics |
Sapelo |
|
MatLab |
R2012a (7.14), R2013a (8.1) |
Other, Programming, Graphics |
Zcluster |
|
Mauve |
2.4.0 |
Bioinformatics |
Sapelo |
|
Mauve |
snapshot_2015-02-13 |
Bioinformatics |
Zcluster |
|
MAVEN-genome |
682, 769, 774 |
Bioinformatics |
Zcluster |
|
MaxBin |
2.1.1 |
Bioinformatics |
Sapelo |
|
MCScanX |
0.8 |
Bioinformatics |
Sapelo |
|
MCScanX-transposed |
0.8 |
Bioinformatics |
Sapelo |
|
MCScanX |
10/18/2013 |
Bioinformatics |
Zcluster |
|
MCL |
12-135 |
Bioinformatics |
Zcluster |
|
MDEnergy |
2.3 |
Chemistry |
Sapelo |
|
MEAD |
2.2.9 |
Chemistry |
Zcluster |
|
MEGA |
7.0.18 |
Bioinformatics |
Zcluster |
|
Megahit |
1.1.1 |
Bioinformatics |
Sapelo |
|
Megahit |
1.0.2 |
Bioinformatics |
Zcluster |
|
MeGAMerge |
1.0 |
Bioinformatics |
Zcluster |
|
MEGAN |
6.4.3 |
Bioinformatics |
Sapelo |
|
megan |
5.5.3 |
Bioinformatics |
Zcluster |
|
MEME |
4.10.2, 4.11.0 |
Bioinformatics |
Sapelo |
|
MEME |
4.10.0 |
Bioinformatics |
Zcluster |
|
MEMo |
1.1 |
Bioinformatics |
Zcluster |
|
Meraculous |
2.0 |
Bioinformatics |
Sapelo |
|
Meraculous |
2.0 |
Bioinformatics |
Zcluster |
|
Mercurial |
3.9 |
Other |
Sapelo |
|
MetaBAT |
20151110 |
Bioinformatics |
Sapelo |
|
Metal |
20110325 |
Bioinformatics |
Sapelo |
|
MetaMOS |
v1.5rc1 |
Bioinformatics |
Zcluster |
|
Metaphlan2 |
2.0 |
Bioinformatics |
Sapelo |
|
Metaphlan2 |
2.0 |
Bioinformatics |
Zcluster |
|
metaseq |
0.5.6 |
Bioinformatics |
Zcluster |
|
metaSort |
1.3 |
Bioinformatics |
Sapelo |
|
Metavelvet |
1.2.02 |
Bioinformatics |
Sapelo |
|
Metavelvet |
1.2.02 |
Bioinformatics |
Zcluster |
|
MetavelvetSL |
1.0 |
Bioinformatics |
Sapelo |
|
metaxa2 |
2.1.3 |
Bioinformatics |
Zcluster |
|
MethPipeline |
0.1_120115 |
Bioinformatics |
Sapelo |
|
methylpy |
08/25/2016 |
Bioinformatics |
Sapelo |
|
METIS |
4.0.3, 5.1.0 |
Math Library |
Zcluster |
|
MGA |
1.5.4 |
Bioinformatics |
Zcluster |
|
MHAP |
2.1.1 |
Bioinformatics |
Sapelo |
|
Migrate |
3.6.11 |
Bioinformatics |
Sapelo |
|
Migrate |
3.5.1 |
Bioinformatics |
Zcluster |
|
Minia |
1.4683 |
Bioinformatics |
Zcluster |
|
Minimac3 |
2.0.1 |
Bioinformatics |
Sapelo |
|
Minimap |
0.2 |
Bioinformatics |
Sapelo |
|
MIRA |
3.9.9 |
Bioinformatics |
Zcluster |
|
MIRA |
3.9.9 |
Bioinformatics |
Zcluster |
|
miRanda |
aug2010 |
Bioinformatics |
Sapelo |
|
mirdeep-p |
1.3 |
Bioinformatics |
Sapelo |
|
miRDeep2 |
0.0.9 |
Bioinformatics |
Sapelo |
|
MISO |
09132016 |
Bioinformatics |
Zcluster |
|
MISO |
09132016 |
Bioinformatics |
Zcluster |
|
MITE-Hunter |
11-2011 |
Bioinformatics |
Zcluster |
|
MixMapper |
2.0 |
Bioinformatics |
Zcluster |
|
MKL |
11.1, 11.2 |
Math Library |
Sapelo |
|
MKL |
11.0 |
Math Library |
Zcluster |
|
mlehot |
1.8.16 |
Bioinformatics |
Sapelo |
|
MOABS |
1.3.2 |
Bioinformatics |
Sapelo |
|
MOABS |
1.2.9 |
Bioinformatics |
Zcluster |
|
MOCAT |
1.3r2 |
Bioinformatics |
Sapelo |
|
Modeller |
9.16 |
Bioinformatics |
Zcluster |
|
MONO |
3.0.3 |
Other, Programming |
Zcluster |
|
MOSAIK |
2.2.24 |
Bioinformatics |
Zcluster |
|
MOTECC qmdcp |
90 |
Chemistry |
Zcluster |
|
MOTHUR |
1.37.5, 1.39.5 |
Bioinformatics |
Sapelo |
|
Mothur |
1.39.5 |
Bioinformatics |
Sapelo2 |
|
MOTHUR |
1.37.1 |
Bioinformatics |
Zcluster |
|
MP-EST |
1.5 |
Bioinformatics |
Sapelo |
|
MP-EST |
1.2 |
Bioinformatics |
Zcluster |
|
mpeg2vidcodec |
12 |
Category:Other |
Zcluster |
|
MPFR |
3.1.2 |
Library |
Sapelo |
|
MPFRC++ |
3.6.2 |
Library |
Sapelo |
|
mpi4py |
1.3 |
Programming |
Zcluster |
|
mpiblast |
1.6.0 |
Bioinformatics |
Zcluster |
|
Mplus |
7.4 |
Statistics |
Sapelo |
|
MrBayes |
3.2.6 |
Bioinformatics |
Sapelo |
|
MrBayes |
3.2.5 |
Bioinformatics |
Zcluster |
|
MrDemuxy |
1.2.0 |
Bioinformatics |
Sapelo |
|
mrfast |
2.5.0.4 |
Bioinformatics |
Zcluster |
|
MSA |
3.8.1b |
Bioinformatics |
Zcluster |
|
MSG |
0.4.3 |
Bioinformatics |
Zcluster |
|
MSTmap |
20170927 |
Bioinformatics |
Sapelo |
|
MSTMap |
20160408 |
Bioinformatics |
Zcluster |
|
MultiLoc2 |
26-10-2009 |
Bioinformatics |
Sapelo |
|
MultiLoc2 |
26-10-2009 |
Bioinformatics |
Zcluster |
|
MultiMappingCounter |
21-09-2017 |
Bioinformatics |
Sapelo |
|
MultiSplice |
0.10 |
Bioinformatics |
Zcluster |
|
MUMmer |
3.23 |
Bioinformatics |
Sapelo |
|
MUMmer |
3.23 |
Bioinformatics |
Sapelo2 |
|
MUMmer |
3.22 |
Bioinformatics |
Zcluster |
|
MUMPS |
4.10.0 |
Math Library |
Zcluster |
|
MUSCLE |
3.8.31 |
Bioinformatics |
Sapelo |
|
MUSCLE |
3.8.31 |
Bioinformatics |
Zcluster |
|
MVFtools |
10112017 |
Bioinformatics |
Sapelo |
|
MyScanACE |
04232012 |
Bioinformatics |
Zcluster |
|
MuTect |
1.1.5 |
Bioinformatics |
Sapelo |
|
MuTect |
1.1.5 |
Bioinformatics |
Zcluster |
|
NAMD |
2.11 |
Chemistry |
Sapelo |
|
NAMD |
2.9 |
Chemistry |
Zcluster |
|
NCBI Blast |
2.2.26 |
Bioinformatics |
Sapelo |
|
NCBI Blast |
2.2.26 |
Bioinformatics |
Zcluster |
|
NCBI Blast + |
2.2.29 |
Bioinformatics |
Sapelo |
|
NCBI Blast + |
2.2.29 |
Bioinformatics |
Zcluster |
|
ncbi blast parsers |
1.0 |
Bioinformatics |
Zcluster |
|
ncbi_toolkit |
12.0.0 |
Bioinformatics |
Zcluster |
|
Ncbi_tools++ |
12.0.0 |
Bioinformatics |
Sapelo |
|
NCBIBLAST+ |
2.7.1 |
Bioinformatics |
Sapelo |
|
NETCDF |
3.6.3, 4.1.3, 4.3.2 |
Library |
Sapelo |
|
NETCDF |
3.6.3, 4.1.3 |
Library |
Zcluster |
|
netCDF4-python |
1.0.5 |
Library |
Zcluster |
|
netlogo |
5.0 |
Other |
Zcluster |
|
Newbler |
2.6 |
Bioinformatics |
Sapelo |
|
Newbler |
2.6 |
Bioinformatics |
Zcluster |
|
Newick-utils |
1.6 |
Bioinformatics |
Zcluster |
|
ngopt |
20140604 |
Bioinformatics |
Zcluster |
|
ngsplot |
2.6.1 |
Bioinformatics |
Zcluster |
|
NGS-QC Toolkit |
2.3.3 |
Bioinformatics |
Sapelo |
|
NGS QC Toolkit |
2.3.3 |
Bioinformatics |
Zcluster |
|
Ngsutils |
0.5.9 |
Bioinformatics |
Sapelo |
|
Ngsutils |
0.5.0c |
Bioinformatics |
Zcluster |
|
NH PhyloBayes |
0.2.3 |
Bioinformatics |
Zcluster |
|
nhPhyML |
01/2012 |
Bioinformatics |
Zcluster |
|
NovelSeq |
1.0.2 |
Bioinformatics |
Zcluster |
|
NovoAlign |
2.07.18 |
Bioinformatics |
Zcluster |
|
NPUTE |
v1 |
Bioinformatics |
Zcluster |
|
nseg |
04182013 |
Bioinformatics |
Zcluster |
|
numexp |
1.4.2 |
Other |
Zcluster |
|
NWCHEM |
6.5 |
Chemistry |
Sapelo |
|
NWCHEM |
6.3.2 |
Chemistry |
Zcluster |
|
NxTrim |
v0.3.2-alpha |
Bioinformatics |
Sapelo |
|
NxTrim |
0.3.1-alpha |
Bioinformatics |
Zcluster |
|
Oases |
0.2.02, 0.2.8 |
Bioinformatics |
Zcluster |
|
Octave |
4.0.3 |
Other, Programming, Graphics |
Sapelo |
|
OligoArray |
2.1 |
Bioinformatics |
Zcluster |
|
OligoArrayAux |
3.8 |
Bioinformatics |
Zcluster |
|
Oligotyping |
2.1 |
Bioinformatics |
Sapelo |
|
Oligotyping |
2.1 |
Bioinformatics |
Zcluster |
|
opal |
2.0.0 |
Bioinformatics |
Zcluster |
|
Open Babel |
2.3.1 |
Chemistry |
Zcluster |
|
OpenBUGS |
3.2.3 |
Statistics |
Sapelo |
|
OpenBUGS |
3.2.2 |
Statistics |
Zcluster |
|
OpenCL |
1.0, 1.1 |
Programming |
Zcluster |
|
OpenCV |
2.4.13.3, 3.0 |
Other |
Sapelo |
|
OpenCV |
2.3.1, 2.4.4 |
Other |
Zcluster |
|
OpenSees |
2015.02.26 |
Other |
Zcluster |
|
opera |
2.0.6 |
Bioinformatics |
Sapelo |
|
opera |
1.3.1 |
Bioinformatics |
Zcluster |
|
Oqtans |
0.1 |
Bioinformatics |
Zcluster |
|
ORCA |
3.0.3, 4.0.0 |
Chemistry |
Sapelo |
|
ORCA |
3.0.3 |
Chemistry |
Zcluster |
|
Orthagogue |
1.0.3 |
Bioinformatics |
Zcluster |
|
OrthoFiller |
1.1.4 |
Bioinformatics |
Sapelo |
|
OrthoFinder |
1.1.8 |
Bioinformatics |
Sapelo |
|
OrthoFinder |
1.0.8 |
Bioinformatics |
Zcluster |
|
OrthoMCL |
2.0.9 |
Bioinformatics |
Zcluster |
|
OSPREY |
2.0 |
Bioinformatics |
Zcluster |
|
p4 |
r231 |
Bioinformatics |
Zcluster |
|
p7zip |
9.20.1 |
Other |
Zcluster |
|
PacBioToCA |
8.2beta-binary |
Bioinformatics |
Zcluster |
|
pagan |
0.39 |
Bioinformatics |
Zcluster |
|
pagit |
v1 |
Bioinformatics |
Zcluster |
|
Pairfq |
0.14.1 |
Bioinformatics |
Zcluster |
|
palfinder |
0.02.04 |
Bioinformatics |
Sapelo |
|
paml |
4.8 |
Bioinformatics |
Sapelo |
|
PAML |
4.8 |
Bioinformatics |
Zcluster |
|
pandas |
0.16.0 |
Other |
Sapelo |
|
pandaseq |
2.0 |
Bioinformatics |
Zcluster |
|
Papara_nt |
2.1.2 |
Bioinformatics |
Zcluster |
|
ParaFly |
0.1.0 |
utility |
Sapelo |
|
ParMETIS |
3.2.0, 4.0.3 |
Math Library |
Zcluster |
|
Paradigm |
0.1-9 |
Bioinformatics |
Zcluster |
|
Paradigmshift |
1.0 |
Bioinformatics |
Zcluster |
|
Parseq |
02 |
Bioinformatics |
Zcluster |
|
ParseRNAseq |
1.0 |
Bioinformatics |
Zcluster |
|
PartitionFinder |
2.0.0-pre11 |
Bioinformatics |
Zcluster |
|
PASA |
2.0.2 |
Bioinformatics |
Zcluster |
|
PASHA |
1.0.6 |
Bioinformatics |
Zcluster |
|
PASTA |
1.6.4 |
Bioinformatics |
Sapelo |
|
PASTA |
1.6.4 |
Bioinformatics |
Zcluster |
|
PatMaN |
1.2.2 |
Bioinformatics |
Zcluster |
|
Paup |
4a147 |
Bioinformatics |
Sapelo |
|
pbh5tools |
0.8.0 |
Bioinformatics |
Zcluster |
|
PBSuite |
15.8.24 |
Bioinformatics |
Sapelo |
|
PBSuite |
15.2.20 |
Bioinformatics |
Zcluster |
|
Peakranger |
1.18 |
Bioinformatics |
Sapelo |
|
PEAR |
0.9.6 |
Bioinformatics |
Zcluster |
|
PEAR |
0.9.10-src |
Bioinformatics |
Sapelo |
|
PePr |
1.1.18 |
Bioinformatics |
Sapelo |
|
Perl |
5.24.0-thread |
Programming |
Sapelo |
|
Perl |
5.14.1 |
Programming |
Zcluster |
|
perM |
0.4.0 |
Bioinformatics |
Zcluster |
|
PETSc |
3.7.6 |
Math Library |
Sapelo |
|
PETSc |
3.1-p8, 3.4.2 |
Math Library |
Zcluster |
|
Pfam_scan |
04282012 |
Bioinformatics |
Zcluster |
|
pftools |
2.3.5 |
Bioinformatics |
Zcluster |
|
PGDBG |
12.10 |
Debugger |
Zcluster |
|
PGI Compilers |
2014 |
Compiler |
Sapelo |
|
PGI Compilers |
2010, 2011, 2012, 2013, 2014 |
Compiler |
Zcluster |
|
PGPROF |
12.10 |
Profiler |
Zcluster |
|
PHASE |
2.1.1 |
Bioinformatics |
Sapelo |
|
PHASE |
2.1.1.linux |
Bioinformatics |
Zcluster |
|
phaser |
1.2.0 |
Bioinformatics |
Sapelo |
|
PhaseTank |
1.0 |
Bioinformatics |
Sapelo |
|
phobius |
1.01 |
Bioinformatics |
Zcluster |
|
phred/phrap/conced |
|
Bioinformatics |
Zcluster |
|
Phyldog |
|
Bioinformatics |
Zcluster |
|
Phylip |
3.69 |
Bioinformatics |
Zcluster |
|
PhyloGenie |
11082017 |
Bioinformatics |
Sapelo |
|
PhyML |
3.0 |
Bioinformatics |
Sapelo |
|
PhyML |
3.3.20170530 |
Bioinformatics |
Sapelo2 |
|
PhyloBayes |
3.3b |
Bioinformatics |
Zcluster |
|
PhyloBayes-MPI |
1.7 |
Bioinformatics |
Sapelo |
|
PhyloBayes-MPI |
20161021 |
Bioinformatics |
Sapelo2 |
|
PhyloBayes-MPI |
1.3b, 1.4e |
Bioinformatics |
Zcluster |
|
PhyloNet |
3.6.0 |
Bioinformatics |
Sapelo |
|
PhyloNet |
3.6.1 |
Bioinformatics |
Zcluster |
|
phyluce |
1.5.0 |
Bioinformatics |
Sapelo |
|
PhyML |
3.0 |
Bioinformatics |
Sapelo |
|
PHYML |
20110919 |
Bioinformatics |
Zcluster |
|
picard |
2.1.1, 2.4.1 |
Bioinformatics |
Sapelo |
|
picard |
1.137 |
Bioinformatics |
Zcluster |
|
picrust |
1.1.0 |
Bioinformatics |
Sapelo |
|
picrust |
1.0.0 |
Bioinformatics |
Zcluster |
|
pigz |
2.3.4 |
Other |
Sapelo |
|
pileup |
0.6 |
Bioinformatics |
Zcluster |
|
Pilon |
1.21 |
Bioinformatics |
Sapelo |
|
pindel |
0.2.4t |
Bioinformatics |
Zcluster |
|
pIRS |
2.0.2 |
Bioinformatics |
Sapelo |
|
Pitchfork |
09272017 |
Bioinformatics |
Sapelo |
|
pknotsRG |
1.3 |
Bioinformatics |
Zcluster |
|
platanus |
1.2.1 |
Bioinformatics |
Zcluster |
|
platypus |
0.8.1 |
Bioinformatics |
Sapelo |
|
PLEK |
1.2 |
Bioinformatics |
Sapelo |
|
plink |
1.07, 1.9-beta3 |
Bioinformatics |
Sapelo |
|
PLINK |
1.07, 1.9b |
Bioinformatics |
Sapelo2 |
|
plink |
1.07, 1.9beta3 |
Bioinformatics |
Zcluster |
|
PLUMED |
2.3.3 |
Chemistry |
Sapelo |
|
popbam |
0.3 |
Bioinformatics |
Zcluster |
|
poretools |
0.6.0 |
Bioinformatics |
Sapelo |
|
portaudio |
19 |
Other |
Sapelo |
|
prank |
100802 |
Bioinformatics |
Zcluster |
|
PRATT |
2.1 |
Bioinformatics |
Sapelo |
|
prep-chem-src |
1.5 |
Other |
Sapelo |
|
Primer3 |
2.0.0-alpha |
Bioinformatics |
Sapelo |
|
Primer3 |
2.3.4 |
Bioinformatics |
Zcluster |
|
PRINSEQ |
0.20.4 |
Bioinformatics |
Sapelo |
|
PRINSEQ |
0.20.3 |
Bioinformatics |
Zcluster |
|
ProbABEL |
0.5.0 |
Bioinformatics |
Sapelo |
|
Prodigal |
2.6.3 |
Bioinformatics |
Sapelo |
|
proovread |
2.12 |
Bioinformatics |
Sapelo |
|
proovread |
2.12 |
Bioinformatics |
Zcluster |
|
Prokka |
1.11 |
Bioinformatics |
Sapelo |
|
Prokka |
1.11 |
Bioinformatics |
Zcluster |
|
protobuf |
2.4.1, 2.6.1, 3.0.0-beta1 |
Other |
Sapelo |
|
protobuf |
2.6.1 |
Other |
Zcluster |
|
Prottest3 |
3.4.2 |
Bioinformatics |
Sapelo |
|
Prottest3 |
3.2.1 |
Bioinformatics |
Zcluster |
|
psmc |
0.6.4-r33 |
Bioinformatics |
Zcluster |
|
ptRNApred |
1.0 |
Bioinformatics |
Zcluster |
|
PuMA |
0.904 |
Bioinformatics |
Zcluster |
|
pybedtools |
09/22/2016 |
Bioinformatics |
Sapelo |
|
pyDNase |
0.2.5 |
Bioinformatics |
Sapelo |
|
pyfasta |
0.5.2 |
Bioinformatics |
Sapelo |
|
pyfasta |
0.5.2 |
Other, Programming |
Zcluster |
|
pydev |
3.3.3 |
Other, Programming |
Zcluster |
|
pyDNase |
0.2.3 |
Bioinformatics |
Zcluster |
|
pymol |
1.8.2 |
Other, Graphics |
Zcluster |
|
pynast |
1.2 |
Bioinformatics |
Zcluster |
|
PyNIO |
1.4.1 |
Other |
Zcluster |
|
PyPy |
2.7-5.10.0 |
Programming |
Sapelo |
|
pyRAD |
3.0.64 |
Bioinformatics |
Sapelo |
|
pyRAD |
3.0.61 |
Bioinformatics |
Zcluster |
|
pysam |
0.8.1 |
Bioinformatics |
Zcluster |
|
PyTables |
2.3.1 |
Bioinformatics |
Zcluster |
|
Pythonlzo |
1.11 |
Bioinformatics |
Sapelo |
|
Python |
2.6.6, 2.7.8, 2.7.13, 3.4.3, 3.5.1 |
Programming |
Sapelo |
|
Python |
2.4.3, 2.7.2, 2.7.8, 3.3.0. 3.4.0 |
Programming |
Zcluster |
|
PyTorch |
0.1.9, 0.1.11 |
Other |
Sapelo |
|
Qiime |
1.9.1 |
Bioinformatics |
Sapelo |
|
Qiime |
1.7.0 |
Bioinformatics |
Zcluster |
|
qeseq |
0.2.2 |
Bioinformatics |
Zcluster |
|
QT |
4.8.5 |
Other |
Zcluster |
|
QTL Cartographer |
1.17j |
Bioinformatics |
Zcluster |
|
Quake |
0.3 |
Bioinformatics |
Sapelo |
|
quake |
0.3.4 |
Bioinformatics |
Zcluster |
|
Qualimap2 |
2.2.1 |
Bioinformatics |
Sapelo |
|
QUAST |
4.5 |
Bioinformatics |
Sapelo |
|
quast |
3.1, 4.3 |
Bioinformatics |
Zcluster |
|
Quantum Espresso |
5.4.0 |
Chemistry |
Sapelo |
|
Quantum Espresso |
4.3.2, 5.0.2 |
Chemistry |
Zcluster |
|
R |
3.1.2, 3.2.1, 3.2.3, 3.3.1 |
Statistics |
Sapelo |
|
R |
2.14.0, 2.15.0, 2.15.2, 3.0.0, 3.0.2, 3.0.3, 3.1.0, 3.1.1, 3.2.0, 3.2.3, 3.3.0, 3.3.2 |
Statistics |
Zcluster |
|
RACA |
0.9.1.1 |
Bioinformatics |
Zcluster |
|
racon |
20161214 |
Bioinformatics |
Sapelo |
|
radcap |
1.0.0 |
Bioinformatics |
Zcluster |
|
RADnome |
0.0.1-7-25 |
Bioinformatics |
Zcluster |
|
Randfold |
2.0.1 |
Bioinformatics |
Sapelo |
|
RANDFOLD |
2.0 |
Bioinformatics |
Zcluster |
|
RAPSearch2 |
2.23 |
Bioinformatics |
Sapelo |
|
RAPSearch2 |
2.17 |
Bioinformatics |
Zcluster |
|
RATT |
10052017 |
Bioinformatics |
Sapelo |
|
RATT |
1.0 |
Bioinformatics |
Zcluster |
|
RAxML |
8.2.4 |
Bioinformatics |
Sapelo |
|
RAxML |
8.2.4 |
Bioinformatics |
Zcluster |
|
RAxML-Light |
1.0.5 |
Bioinformatics |
Zcluster |
|
Ray |
2.3.1 |
Bioinformatics |
Sapelo |
|
RCCBatchBlast |
5.0 |
Bioinformatics |
Zcluster |
|
RCCBatchBlastPlus |
1.0 |
Bioinformatics |
Zcluster |
|
RDPTools |
2.2.0 |
Bioinformatics |
Sapelo |
|
READemption |
0.3.7 |
Bioinformatics |
Sapelo |
|
RED |
1.0 |
Bioinformatics |
Sapelo |
|
REAPR |
1.0.18 |
Bioinformatics |
Sapelo |
|
REAPR |
1.0.16 |
Bioinformatics |
Zcluster |
|
RECON |
1.08 |
Bioinformatics |
Zcluster |
|
REPCLASS |
1.0.1 |
Bioinformatics |
Sapelo |
|
repdenovo |
02232017 |
Bioinformatics |
Sapelo |
|
RepeatExplorer |
02/2015 |
Bioinformatics |
Sapelo |
|
RepeatExplorer |
02/2015 |
Bioinformatics |
Zcluster |
|
RepeatExplorer-TAREAN |
12/13/2016, 01/10/2017 |
Bioinformatics |
Sapelo |
|
Repeatmasker |
4.0.5 |
Bioinformatics |
Sapelo |
|
Repeatmasker |
4.0.5 |
Bioinformatics |
Zcluster |
|
Repeatmodeler |
1.0.8 |
Bioinformatics |
Sapelo |
|
Repeatmodeler |
1.0.8 |
Bioinformatics |
Zcluster |
|
Reptile |
1.1 |
Bioinformatics |
Zcluster |
|
RepeatScout |
1.05 |
Bioinformatics |
Zcluster |
|
RES-Scanner |
20170726 |
Bioinformatics |
Sapelo |
|
Revbayes |
1.0.5 |
Bioinformatics |
Sapelo |
|
riboPicker |
0.4.3 |
Bioinformatics |
Zcluster |
|
RIP |
4 |
Other |
Zcluster |
|
RITA |
1.0.1 |
Bioinformatics |
Zcluster |
|
RMBlast |
2.2.27 |
Bioinformatics |
Zcluster |
|
Rmpi |
0.6-6 |
Programming |
Sapelo |
|
Rmpi |
0.5-9, 0.6-1, 0.6-3, 0.6-5, 0.6-6 |
Programming |
Zcluster |
|
RNA-SeQC |
1.1.8 |
Bioinformatics |
Zcluster |
|
RNAmmer |
1.2 |
Bioinformatics |
Sapelo |
|
RNAmmer |
1.2 |
Bioinformatics |
Zcluster |
|
RNAple |
0.2 |
Bioinformatics |
Sapelo |
|
RNAprof |
2.0 |
Bioinformatics |
Zcluster |
|
rnaQUAST |
0.3.0 |
Bioinformatics |
Zcluster |
|
RNAshapes |
2.1.6 |
Bioinformatics |
Zcluster |
|
RNAz |
2.1 |
Bioinformatics |
Zcluster |
|
rnnotator |
2.4.12 |
Bioinformatics |
Zcluster |
|
Roary |
3.8 |
Bioinformatics |
Sapelo |
|
Roche |
2.6 |
Bioinformatics |
Zcluster |
|
Rockhopper |
2.0.2 |
Bioinformatics |
Zcluster |
|
RogueNaRok |
1.0 |
Bioinformatics |
Zcluster |
|
Roms_tools |
3.1.1 |
Other |
Sapelo |
|
Rosetta |
2016.15.58628, 2017.26.59567 |
Chemistry |
Sapelo |
|
ROOT |
5.34.09 |
Library |
Zcluster |
|
rpy |
1.0.3 |
Other |
Zcluster |
|
rpy2 |
2.4.3 |
Other |
Zcluster |
|
RSAT (RSA-tools) |
1.0 |
Bioinformatics |
Zcluster |
|
RSEM |
1.2.20 |
Bioinformatics |
Sapelo |
|
RSEM |
1.3.0 |
Bioinformatics |
Zcluster |
|
RSEG |
0.4.8NC |
Bioinformatics |
Zcluster |
|
RSeQC |
2.6.4 |
Bioinformatics |
Sapelo |
|
RSeQC |
2.6.3 |
Bioinformatics |
Zcluster |
|
rspr |
1.2.2 |
Other |
Zcluster |
|
Ruby |
2.4.2 |
Programming |
Sapelo |
|
RUM |
1.11 |
Bioinformatics |
Zcluster |
|
Sabre |
02/03/2017 |
Other |
Sapelo |
|
Sage |
7.4, 8.0 |
Other |
Sapelo |
|
Sage |
6.3 |
Other |
Zcluster |
|
sailfish |
0.6.3 |
Bioinformatics |
Zcluster |
|
Salmon |
0.6.1-pre |
Bioinformatics |
Sapelo |
|
sam2pairwise |
1.0.0 |
Bioinformatics |
Sapelo |
|
sambamba |
0.4.7 |
Bioinformatics |
Zcluster |
|
samblaster |
0.1.15 |
Bioinformatics |
Zcluster |
|
samtools |
1.3.1 1.6 |
Bioinformatics |
Sapelo |
|
SAMtools |
0.1.19, 1.3.1, 1.6 |
Bioinformatics |
Sapelo2 |
|
samtools |
1.2 |
Bioinformatics |
Zcluster |
|
SATé |
2.2.7 |
Bioinformatics |
Sapelo |
|
SATé |
2.2.7 |
Bioinformatics |
Zcluster |
|
sbt |
0.13.12, 1.0.2 |
Other, Programming |
Sapelo |
|
sbt |
0.13.9 |
Other, Programming |
Zcluster |
|
scala |
2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 |
Other, Programming |
Sapelo |
|
scala |
2.11.7, 2.12.0-M3 |
Other, Programming |
Zcluster |
|
ScaLAPACK |
2.0.2 |
Math Library |
Sapelo |
|
ScaLAPACK |
2.0.2 |
Math Library |
Zcluster |
|
scalpel |
0.5.3 |
Bioinformatics |
Sapelo |
|
Scripture |
3/20/2015 |
Bioinformatics |
Sapelo |
|
Scripture |
3/20/2015 |
Bioinformatics |
Zcluster |
|
SEAStAR |
0.4.8 |
Bioinformatics |
Zcluster |
|
segemehl |
0.1.9 |
Bioinformatics |
Zcluster |
|
Seq-Gen |
1.3.3 |
Bioinformatics |
Sapelo |
|
seqMINER |
1.3.3e |
Bioinformatics |
Zcluster |
|
seqtk |
1.0-r63-dirty |
Bioinformatics |
Sapelo |
|
seqtk |
1.0-r63-dirty |
Bioinformatics |
Zcluster |
|
SEQuel |
1.0.2 |
Bioinformatics |
Zcluster |
|
SGA |
0.10.15 |
Bioinformatics |
Sapelo |
|
shapeit |
v2.r837 |
Bioinformatics |
Sapelo |
|
SHE-RA |
012012 |
Bioinformatics |
Zcluster |
|
SHORE |
0.9.3 |
Bioinformatics |
Sapelo |
|
SHORE |
0.9.3 |
Bioinformatics |
Zcluster |
|
SHOREmap |
2.0, 3.0 |
Bioinformatics |
Zcluster |
|
ShortStack |
3.8.5 |
Bioinformatics |
Sapelo |
|
sicer |
1.1 |
Bioinformatics |
Sapelo |
|
sicer |
1.1 |
Bioinformatics |
Zcluster |
|
sickle |
1.33 |
Bioinformatics |
Sapelo |
|
sickle |
1.33 |
Bioinformatics |
Zcluster |
|
SigHunt |
1.0 |
Bioinformatics |
Zcluster |
|
SignalIP |
4.1c |
Bioinformatics |
Zcluster |
|
SInC-simulator |
2017.06.06 |
Bioinformatics |
Sapelo |
|
SINE_Scan |
1.1.1 |
Bioinformatics |
Sapelo |
|
SISRS |
1.0 |
Bioinformatics |
Zcluster |
|
SiZer |
07022012 |
Bioinformatics |
Zcluster |
|
slclust |
04282012 |
Bioinformatics |
Zcluster |
|
slda |
0.1.4 |
Other |
Sapelo |
|
SMRT-Analysis |
2.3.0 |
Bioinformatics |
Sapelo |
|
SMRT-Analysis |
2.3.0 |
Bioinformatics |
Zcluster |
|
snakemake |
4.0.0 |
Bioinformatics |
Sapelo |
|
SNAP |
2010-7-28 |
Bioinformatics |
Zcluster |
|
SNAPP |
1.1.4 |
Bioinformatics |
Zcluster |
|
SnoReport |
1.3 |
Bioinformatics |
Zcluster |
|
snow |
0.3-8, 0.3-10, 0.3-12, 0.3-13 |
Statistics |
Zcluster |
|
snowhite |
1.1.4 |
Bioinformatics |
Zcluster |
|
snpEff |
4.11 |
Bioinformatics |
Zcluster |
|
SNPhylo |
20160204 |
Bioinformatics |
Sapelo |
|
SNPhylo |
20140701 |
Bioinformatics |
Zcluster |
|
Soap2 |
2.21 |
Bioinformatics |
Zcluster |
|
SOAPaligner |
2.21 |
Bioinformatics |
Sapelo |
|
SOAPaligner |
2.21 |
Bioinformatics |
Sapelo2 |
|
SOAPaligner |
2.21 |
Bioinformatics |
Zcluster |
|
SOAPdenovo |
1.05 |
Bioinformatics |
Zcluster |
|
SOAPdenovo-trans |
1.01 |
Bioinformatics |
Zcluster |
|
SOAPdenovo2 |
r240 |
Bioinformatics |
Sapelo |
|
SOAPdenovo2 |
r240 |
Bioinformatics |
Sapelo2 |
|
SOAPdenovo2 |
r223, r240 |
Bioinformatics |
Zcluster |
|
SOAPsnp |
1.03 |
Bioinformatics |
Zcluster |
|
SomaticCall |
42811 |
Bioinformatics |
Zcluster |
|
SortMeRNA |
2.1 |
Other |
Sapelo |
|
Spark |
1.6.0, 2.0.1, 2.2.1 |
Other |
Sapelo |
|
spimap |
1.1 |
Bioinformatics |
Zcluster |
|
SPAdes |
3.11.1 |
Bioinformatics |
Sapelo2 |
|
SPAdes |
3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 |
Bioinformatics |
Sapelo |
|
SPAdes |
3.6.2, 3.8.0, 3.9.0, 3.10.0 |
Bioinformatics |
Zcluster |
|
SparseAssembler |
2012/06/15 |
Bioinformatics |
Zcluster |
|
SpeedSeq |
052317 |
Bioinformatics |
Sapelo |
|
Splitaake |
1.0 |
Bioinformatics |
Zcluster |
|
spolpred |
09/10/2013 |
Bioinformatics |
Zcluster |
|
sprai |
0.9.9.10 |
Bioinformatics |
Zcluster |
|
sprspace |
1.0 |
Other |
Zcluster |
|
Sputnik |
03/20/2013 |
Bioinformatics |
Zcluster |
|
SQUID |
1.1 |
Bioinformatics |
Sapelo |
|
SRAToolKit |
2.8.2-1 |
Bioinformatics |
Sapelo |
|
SRA |
2.8.1 |
Bioinformatics |
Zcluster |
|
SSAHA2 |
2.5.5 |
Bioinformatics |
Zcluster |
|
SSAKE |
v3-8 |
Bioinformatics |
Zcluster |
|
SSPACE |
2.1.1 |
Bioinformatics |
Sapelo |
|
SSPACE |
2.0 |
Bioinformatics |
Zcluster |
|
ssr_pipeline |
0.95 |
Bioinformatics |
Zcluster |
|
stacks |
1.40, 1.44, 2.0beta2, 2.0beta7 |
Bioinformatics |
Sapelo |
|
Stacks |
1.48 |
Bioinformatics |
Sapelo2 |
|
stacks |
1.35 |
Bioinformatics |
Zcluster |
|
STAMP |
2.1.3 |
Bioinformatics |
Sapelo |
|
STAMPY |
1.0.31 |
Bioinformatics |
Sapelo |
|
STAMPY |
1.0.21 |
Bioinformatics |
Zcluster |
|
STAR |
2.5.3a |
Bioinformatics |
Sapelo |
|
STAR |
2.4.1c |
Bioinformatics |
Zcluster |
|
STEM |
2.0 |
Bioinformatics |
Zcluster |
|
STEM-hy |
1.0 |
Bioinformatics |
Zcluster |
|
strauto |
1.0 |
Bioinformatics |
Zcluster |
|
StringTie |
1.2.0 |
Bioinformatics |
Sapelo |
|
StringTie |
1.3.3 |
Bioinformatics |
Sapelo2 |
|
StringTie |
1.1.2 |
Bioinformatics |
Zcluster |
|
structure |
2.3.4 |
Bioinformatics |
Sapelo |
|
structure |
2.3.4 |
Bioinformatics |
Zcluster |
|
structurama |
2.0 |
Bioinformatics |
Zcluster |
|
subread |
1.5.2 |
Bioinformatics |
Sapelo |
|
subread |
1.4.6 |
Bioinformatics |
Zcluster |
|
suma_package |
1.0 |
Bioinformatics |
Zcluster |
|
SUNTANS |
20150923 |
Other |
Sapelo |
|
SUNTANS |
697-trunk, 784 |
Other |
Zcluster |
|
SuperLU |
4.3 |
Math Library |
Zcluster |
|
SuperLU_dist |
3.3 |
Math Library |
Zcluster |
|
SUPPA |
06122015 |
Bioinformatics |
Sapelo |
|
SVDetect |
0.7 |
Bioinformatics |
Sapelo |
|
SVDetect |
0.7 |
Bioinformatics |
Zcluster |
|
SVDquartets |
1.0 |
Bioinformatics |
Zcluster |
|
SVMlight |
6.02 |
Other |
Sapelo |
|
SWIG |
3.0.2 |
Programming |
Zcluster |
|
T-Coffee |
11.00.8cbe486 |
Bioinformatics |
Sapelo |
|
T-REX |
1.0 |
Bioinformatics |
Sapelo |
|
tabix |
0.2.5 |
Bioinformatics |
Zcluster |
|
TagCleaner |
0.13 |
Bioinformatics |
Zcluster |
|
Tandem Repeats Finder |
4.09 |
Bioinformatics |
Sapelo |
|
Tandem Repeats Finder |
4.07b |
Bioinformatics |
Zcluster |
|
TAPDANCE |
03/20/2013 |
Bioinformatics |
Zcluster |
|
tassel |
5.2.20 |
Bioinformatics |
Zcluster |
|
tax2tree |
1.0 |
Bioinformatics |
Zcluster |
|
TEClass |
2.1 |
Bioinformatics |
Zcluster |
|
TEPID |
0.6 |
Bioinformatics |
Sapelo |
|
TEMP |
1.0.4 |
Bioinformatics |
Zcluster |
|
tesseract |
3.04.01 |
Bioinformatics |
Sapelo |
|
TEToolkit |
1.5.0 |
Bioinformatics |
Zcluster |
|
tgicl |
2.1 |
Bioinformatics |
Zcluster |
|
Theano |
0.8.0 |
Other |
Sapelo |
|
Theano |
0.8.0 |
Other |
Zcluster |
|
TIGER |
1.02 |
Bioinformatics |
Zcluster |
|
TIGRA |
0.4.0 |
Bioinformatics |
Sapelo |
|
tmhmm |
2.0c |
Bioinformatics |
Zcluster |
|
TOFU2 |
3.9 |
Bioinformatics |
Sapelo |
|
tophat |
2.0.14 |
Bioinformatics |
Sapelo |
|
Tophat |
2.1.1 |
Bioinformatics |
Sapelo2 |
|
tophat |
2.0.14 |
Bioinformatics |
Zcluster |
|
trans-abyss |
1.4.4 |
Bioinformatics |
Zcluster |
|
TransDecoder |
2.0.1 |
Bioinformatics |
Sapelo |
|
TransDecoder |
2.0.1 |
Bioinformatics |
Zcluster |
|
Transposome |
0.09.7 |
Bioinformatics |
Sapelo |
|
TransposonPSI |
08222010 |
Bioinformatics |
Sapelo |
|
Transrate |
1.0.1 |
Bioinformatics |
Sapelo |
|
Tracer |
v 1.5 |
Bioinformatics |
Zcluster |
|
TRE |
4.07b |
Bioinformatics |
Zcluster |
|
TreeFix |
1.1.10 |
Bioinformatics |
Zcluster |
|
TreeFix-DTL |
1.0.2 |
Bioinformatics |
Zcluster |
|
TreeMix |
1.13 |
Bioinformatics |
Sapelo |
|
treemix |
1.12 |
Bioinformatics |
Zcluster |
|
Triangle |
1.6 |
Math Library |
Zcluster |
|
trimal |
1.4 |
Bioinformatics |
Zcluster |
|
TrimGalore |
0.4.4 |
Bioinformatics |
Sapelo |
|
trimmomatic |
0.36 |
Bioinformatics |
Sapelo |
|
trimmomatic |
0.32 |
Bioinformatics |
Zcluster |
|
TrimGalore |
4.0 |
Bioinformatics |
Sapelo |
|
TrimGalore |
0.3.7 |
Bioinformatics |
Zcluster |
|
trimreads |
07232013 |
Bioinformatics |
Zcluster |
|
Trinity |
2.06 |
Bioinformatics |
Sapelo |
|
Trinity |
2.06 |
Bioinformatics |
Zcluster |
|
Trinotate |
3.0.1 |
Bioinformatics |
Zcluster |
|
TRNAscan-SE |
2.0.0 |
Bioinformatics |
Sapelo |
|
tRNAscan-SE |
1.23, 1.3.1 |
Bioinformatics |
Zcluster |
|
UCHIME |
4.2.40 |
Bioinformatics |
Sapelo |
|
UClust |
1.2.22q |
Bioinformatics |
Zcluster |
|
UNAFold |
3.8 |
Bioinformatics |
Zcluster |
|
UPP |
2.0 |
Other |
Zcluster |
|
usearch |
10.0.240 |
Bioinformatics |
Sapelo |
|
usearch |
7.0.1090_i86 |
Bioinformatics |
Zcluster |
|
UCSC |
06-17-2015 |
Bioinformatics |
Sapelo |
|
UCSC |
07-11-2014 |
Bioinformatics |
Zcluster |
|
varscan |
2.3.8 |
Bioinformatics |
Zcluster |
|
vcflib |
1.0.0-rc1 |
Bioinformatics |
Sapelo |
|
vcftools |
0.1.12b |
Bioinformatics |
Sapelo |
|
vcftools |
0.1.12a |
Bioinformatics |
Zcluster |
|
velvet |
1.2.10 |
Bioinformatics |
Sapelo |
|
velvet |
1.2.08, 1.2.10 |
Bioinformatics |
Zcluster |
|
VelvetOptimiser |
2.2.5 |
Bioinformatics |
Sapelo |
|
VelvetOptimiser |
2.2.5 |
Bioinformatics |
Zcluster |
|
VEP |
76 |
Bioinformatics |
Zcluster |
|
VICUNA |
1.3 |
Bioinformatics |
Zcluster |
|
ViennaRNA |
2.1.3 |
Bioinformatics |
Sapelo |
|
ViennaRNA |
1.8.5, 2.1.7 |
Bioinformatics |
Zcluster |
|
viromescan |
05292017 |
Bioinformatics |
Sapelo |
|
virtualenv |
1.8.1 |
Other |
Zcluster |
|
VMD |
1.9.1 |
Chemistry |
Zcluster |
|
voxnet |
0.1 |
Other |
Sapelo |
|
voxnet |
0.1 |
Other |
Zcluster |
|
vsearch |
1.10.1 |
Bioinformatics |
Sapelo |
|
vsearch |
1.1.0 |
Bioinformatics |
Zcluster |
|
VTK |
5.8.0 |
Other |
Zcluster |
|
webLogo |
3.3 |
Bioinformatics |
Zcluster |
|
weka |
3.6.10 |
Other |
Zcluster |
|
wgs |
8.2 |
Bioinformatics |
Sapelo |
|
wgs |
8.2beta-binary |
Bioinformatics |
Zcluster |
|
whatshap |
0.12 |
Bioinformatics |
Sapelo |
|
wigToBigWig |
v4 |
Bioinformatics |
Zcluster |
|
WinHap |
2.0 |
Bioinformatics |
Sapelo |
|
WISE2 |
2.4.1 |
Bioinformatics |
Zcluster |
|
WPS |
3.6, 3.6.1, 3.7, 3.8 |
Other |
Sapelo |
|
WPS |
3.4.1 |
Other |
Zcluster |
|
WRF |
3.6, 3.6.1, 3.7, 3.8 |
Other |
Sapelo |
|
WRF |
3.4.1 |
Other |
Zcluster |
|
WRF-Chem |
3.6.1, 3.8 |
Other |
Sapelo |
|
WU Blast |
2.2.6 |
Bioinformatics |
Sapelo |
|
WU Blast |
2.2.6 |
Bioinformatics |
Zcluster |
|
Xander_assembler |
7/12/2016 |
Bioinformatics |
Sapelo |
|
xgboost |
0.4a30 |
Other |
Zcluster |
|
XP-CLR |
1.0 |
Bioinformatics |
Zcluster |
|
Xscape |
11182014 |
Bioinformatics |
Zcluster |
|
YAHA |
0.1.83 |
Bioinformatics |
Sapelo |
|
YASRA |
2.33 |
Bioinformatics |
Sapelo |
|
yasra |
2.3 |
Bioinformatics |
Zcluster |
|
yt |
3.2.3 |
Other |
Sapelo |
|
Zbar |
0.10 |
Graphics |
Sapelo |
|
zlib |
1.2.5, 1.2.8 |
Library |
Sapelo |
|
Zorro |
2.2 |
Bioinformatics |
Zcluster |
|