Software2

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Revision as of 11:24, 15 August 2018 by Yhuang (talk | contribs)
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Below is a partial list of software packages installed on Sapelo, Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:

module spider

You can also use the command above to search for a specific application. For more information, please see Lmod.

Installed Software List

Last updated 2018-08-15. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster Top
4p 1.0 Bioinformatics Sapelo Up20.png
4p 1.0 Bioinformatics Sapelo2 Up20.png
ABySS 2.0.2 Bioinformatics Sapelo Up20.png
ABySS 1.9.0, 2.2.2, 2.1.0 Bioinformatics Sapelo2 Up20.png
AUGUSTUS 3.2.3 Bioinformatics T2eaching Up20.png
AUGUSTUS 3.2.3 Bioinformatics Teaching Up20.png
Artemis 17.0.1 Bioinformatics Teaching Up20.png
BCFtools 1.3.1, 1.6, 1.8 Bioinformatics Teaching Up20.png
BEDTools 2.26.0 Bioinformatics T2eaching Up20.png
BEDTools 2.26.0 Bioinformatics Teaching Up20.png
BLAST+ 2.6.0 Bioinformatics Teaching Up20.png
BLAST 2.2.26 Bioinformatics Teaching Up20.png
bcl2fastq 2.17.1.14 Bioinformatics Sapelo Up20.png
BioPerl 1.7.1 Bioinformatics T2eaching Up20.png
BioPerl 1.7.1 Bioinformatics Teaching Up20.png
Biopython 1.68 Bioinformatics T2eaching Up20.png
Biopython 1.68 Bioinformatics Teaching Up20.png
Bowtie2 2.2.3, 2.3.3, 2.3.4.1 Bioinformatics Teaching Up20.png
Canu 1.4, 1.5, 1.6, 1.7 Bioinformatics Teaching Up20.png
Cufflinks 2.2.1 Bioinformatics Teaching Up20.png
DBG2OLC 20170208 Bioinformatics Teaching Up20.png
EMBOSS 6.6.0 Bioinformatics Teaching Up20.png
GAG 2.0.1 Bioinformatics Teaching Up20.png
GATK 3.4-0, 3.8-0 Bioinformatics Teaching Up20.png
GapFiller 2.1.1 Bioinformatics Teaching Up20.png
GeneMarkES 4.33 Bioinformatics Teaching Up20.png
Java 1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 Programming Teaching Up20.png
MAFFT 7.130, 7.273, 7.313 Bioinformatics Teaching Up20.png
MUMmer 3.23 Bioinformatics Teaching Up20.png
OrthoFinder 2.1.2 Bioinformatics Teaching Up20.png
PAML 4.9h Bioinformatics Teaching Up20.png
Picard 2.16.0 Bioinformatics Teaching Up20.png
Pilon 1.22 Bioinformatics Teaching Up20.png
Proovread 2.14.1 Bioinformatics Teaching Up20.png
RepeatMasker 4.0.7 Bioinformatics Teaching Up20.png
RepeatModeler 1.0.11 Bioinformatics Teaching Up20.png
RepeatScout 1.05 Bioinformatics Teaching Up20.png
SMRTLINK 5.0.1.9585, 5.1.0.26412 Bioinformatics T2eaching Up20.png
SMRTLINK 5.0.1.9585, 5.1.0.26412 Bioinformatics Teaching Up20.png
SNAP-Zoe 20060728 Bioinformatics Teaching Up20.png
SOAPdenovo2 r240 Bioinformatics Teaching Up20.png
SPAdes 3.11.1 Bioinformatics Teaching Up20.png
STAR 2.5.3a Bioinformatics Teaching Up20.png
SnpEff 4.3t Bioinformatics Teaching Up20.png
Zbar 0.10 Graphics Sapelo Up20.png
zlib 1.2.5, 1.2.8 Library Sapelo Up20.png

Back To Top Up20.png