Below is a partial list of software packages installed on Sapelo, Sapelo2, Teaching (we are in the process of adding wiki pages for more applications). To view a list of all modules installed on Sapelo2/Teaching, along with a short description, please run the following command on Sapelo2/Teaching:
module spider
You can also use the command above to search for a specific application. For more information, please see Lmod.
Installed Software List
Last updated 2018-08-15.
Note: Click on the icons to the right of the column headings to sort the table.
0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Name
|
Version
|
Category
|
Cluster
|
Top
|
4p |
1.0 |
Bioinformatics |
Sapelo |
|
4p |
1.0 |
Bioinformatics |
Sapelo2 |
|
ABySS |
2.0.2 |
Bioinformatics |
Sapelo |
|
ABySS |
1.9.0, 2.2.2, 2.1.0 |
Bioinformatics |
Sapelo2 |
|
AUGUSTUS |
3.2.3 |
Bioinformatics |
T2eaching |
|
AUGUSTUS |
3.2.3 |
Bioinformatics |
Teaching |
|
Artemis |
17.0.1 |
Bioinformatics |
Teaching |
|
BCFtools |
1.3.1, 1.6, 1.8 |
Bioinformatics |
Teaching |
|
BEDTools |
2.26.0 |
Bioinformatics |
T2eaching |
|
BEDTools |
2.26.0 |
Bioinformatics |
Teaching |
|
BLAST+ |
2.6.0 |
Bioinformatics |
Teaching |
|
BLAST |
2.2.26 |
Bioinformatics |
Teaching |
|
bcl2fastq |
2.17.1.14 |
Bioinformatics |
Sapelo |
|
BioPerl |
1.7.1 |
Bioinformatics |
T2eaching |
|
BioPerl |
1.7.1 |
Bioinformatics |
Teaching |
|
Biopython |
1.68 |
Bioinformatics |
T2eaching |
|
Biopython |
1.68 |
Bioinformatics |
Teaching |
|
Bowtie2 |
2.2.3, 2.3.3, 2.3.4.1 |
Bioinformatics |
Teaching |
|
Canu |
1.4, 1.5, 1.6, 1.7 |
Bioinformatics |
Teaching |
|
Cufflinks |
2.2.1 |
Bioinformatics |
Teaching |
|
DBG2OLC |
20170208 |
Bioinformatics |
Teaching |
|
EMBOSS |
6.6.0 |
Bioinformatics |
Teaching |
|
GAG |
2.0.1 |
Bioinformatics |
Teaching |
|
GATK |
3.4-0, 3.8-0 |
Bioinformatics |
Teaching |
|
GapFiller |
2.1.1 |
Bioinformatics |
Teaching |
|
GeneMarkES |
4.33 |
Bioinformatics |
Teaching |
|
Java |
1.8.0_92, 1.8.0_112, 1.8.0_121, 1.8.0_141, 1.8.0_144 |
Programming |
Teaching |
|
MAFFT |
7.130, 7.273, 7.313 |
Bioinformatics |
Teaching |
|
MUMmer |
3.23 |
Bioinformatics |
Teaching |
|
OrthoFinder |
2.1.2 |
Bioinformatics |
Teaching |
|
PAML |
4.9h |
Bioinformatics |
Teaching |
|
Picard |
2.16.0 |
Bioinformatics |
Teaching |
|
Pilon |
1.22 |
Bioinformatics |
Teaching |
|
Proovread |
2.14.1 |
Bioinformatics |
Teaching |
|
RepeatMasker |
4.0.7 |
Bioinformatics |
Teaching |
|
RepeatModeler |
1.0.11 |
Bioinformatics |
Teaching |
|
RepeatScout |
1.05 |
Bioinformatics |
Teaching |
|
SMRTLINK |
5.0.1.9585, 5.1.0.26412 |
Bioinformatics |
T2eaching |
|
SMRTLINK |
5.0.1.9585, 5.1.0.26412 |
Bioinformatics |
Teaching |
|
SNAP-Zoe |
20060728 |
Bioinformatics |
Teaching |
|
SOAPdenovo2 |
r240 |
Bioinformatics |
Teaching |
|
SPAdes |
3.11.1 |
Bioinformatics |
Teaching |
|
STAR |
2.5.3a |
Bioinformatics |
Teaching |
|
SnpEff |
4.3t |
Bioinformatics |
Teaching |
|
Zbar |
0.10 |
Graphics |
Sapelo |
|
zlib |
1.2.5, 1.2.8 |
Library |
Sapelo |
|
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