YH-T-Template

Category

Bioinformatics 

Program On

Teaching

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

Please refer to Running_Jobs_on_the_teaching_cluster, Run X window Jobs and Run interactive Jobs for generic details about running jobs at Teaching.

The last version of this application is at trinity

Here is an example of a shell script, sub.sh, to run on at the batch queue: <divp class="gscript">

1. !/bin/bash
2. SBATCH --job-name=j_trinity
3. SBATCH --partition=batch
4. SBATCH --mail-type=ALL
5. SBATCH --mail-user=username@uga.edu
6. SBATCH --ntasks=1
7. SBATCH --mem=10gb
8. SBATCH --time=08:00:00
9. SBATCH --output=trinity.%j.out

cd $SLURM_SUBMIT_DIR

cd $PBS_O_WORKDIR ml [options]

Here is an example of job submission command:

sbatch ./sub.sh 

Documentation

<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

Back to Top

Installation

Source code is obtained from Trinity

System

64-bit Linux