Software2

Installed Software List

Last updated 2018-08-06. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name	Version	Category	Cluster
AUGUSTUS	3.2.3	Bioinformatics	Teaching
BCFtools	1.3.1 1.8 1.6 1.3.1, 1.8, 1.6, 1.3.1	Bioinformatics	Teaching
BEDTools	2.26.0	Bioinformatics	Teaching
Biopython	1.68 1.68 1.68, 1.68, 1.68, 1.68, 1.68	Bioinformatics	Teaching
BLAST	2.2.26	Bioinformatics	Teaching
Bowtie2	2.2.3 2.3.4.1 2.3.3 2.2.3, 2.3.4.1, 2.3.3, 2.2.3	Bioinformatics	Teaching
BWA	0.7.15 0.7.17 0.7.15, 0.7.17, 0.7.15	Bioinformatics	Teaching
Canu	1.4 1.7 1.6 1.5 1.4, 1.7, 1.6, 1.5, 1.4, 1.7, 1.6, 1.5, 1.4	Bioinformatics	Teaching
GATK	3.4-0 3.8-0 3.4-0, 3.8-0, 3.4-0, 3.8-0, 3.4-0	Bioinformatics	Teaching
Java	1.8.0_92 1.8.0_144 1.8.0_141 1.8.0_121 1.8.0_112 1.8.0_92, 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92, 1.8.0_144, 1.8.0_141, 1.8.0_121, 1.8.0_112, 1.8.0_92	Other	Teaching
MAFFT	7.130 7.313 7.273 7.130, 7.313, 7.273, 7.130, 7.313, 7.273, 7.130	Bioinformatics	Teaching
Perl	5.20.3 5.26.1 5.26.1 5.26.0 5.24.1 5.24.0 5.20.3, 5.26.1, 5.26.1, 5.26.0, 5.24.1, 5.24.0, 5.20.3, 5.26.1, 5.26.1, 5.26.0	Other	Teaching
Python	2.7.12 3.6.4 3.5.2 2.7.14 2.7.14 2.7.14 2.7.14 2.7.14 2.7.12, 3.6.4, 3.5.2, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.14, 2.7.12	Other	Teaching
Qiime	1.9.1	Bioinformatics	Sapelo
RAxML	8.2.11 8.2.11 8.2.11, 8.2.11, 8.2.11	Bioinformatics	Teaching
SAMtools	0.1.19 1.6 1.3.1 1.3.1 0.1.19, 1.6, 1.3.1, 1.3.1, 0.1.19	Bioinformatics	Teaching
Stacks	1.48 2.0 1.48, 2.0, 1.48	Bioinformatics	Teaching
STAR	2.5.3a 2.6.0c 2.5.3a, 2.6.0c, 2.5.3a	Bioinformatics	Teaching
SWIG	3.0.2	Programming	Zcluster
T-Coffee	11.00.8cbe486	Bioinformatics	Sapelo
T-REX	1.0	Bioinformatics	Sapelo
tabix	0.2.5	Bioinformatics	Zcluster
Zbar	0.10	Graphics	Sapelo
zlib	1.2.5, 1.2.8	Library	Sapelo
Zorro	2.2	Bioinformatics	Zcluster

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