YH-S2-Template

Category

Bioinformatics 

Program On

Sapelo2

Version

2.0.6

Author / Distributor

Trinity 

Description

"" More details are at Trinity

Running Program

Please refer to Running Jobs on Sapelo2, [Running_Jobs_on_Sapelo2#Running_an_X-windows_application | Run X window Jobs]] and Run interactive Jobs for generic details about running jobs at Sapelo2.

The last version of this application is at /usr/local/apps/gb/trinity/2.0.6

Here is an example of a shell script, sub.sh, to run on at the batch queue:

#PBS -S /bin/bash
#PBS -N j_<!-- NAME BEGIN -->trinity<!-- NAME END -->
#PBS -q batch
#PBS -l nodes=1:ppn=1:AMD
#PBS -l walltime=480:00:00
#PBS -l mem=10gb

cd $PBS_O_WORKDIR
<!-- TEST_COMMAND BEGIN --><!-- TEST_COMMAND END --> [options]   

Here is an example of job submission command:

qsub  ./sub.sh 

Documentation

<!-- TEST_COMMAND_HELP BEGIN --><!-- TEST_COMMAND_HELP END -->

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Installation

Source code is obtained from Trinity

System

64-bit Linux