Software-old: Difference between revisions

From Research Computing Center Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1,711: Line 1,711:
| [[spimap]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| [[spimap]] || 1.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SPAdes-Sapelo|SPAdes]] || 3.7.0, 3.8.0, 3.9.0, 3.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
| [[SPAdes-Sapelo|SPAdes]] || 3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[SPAdes]] || 3.6.2, 3.8.0, 3.9.0, 3.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]
| [[SPAdes]] || 3.6.2, 3.8.0, 3.9.0, 3.10.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]

Revision as of 09:25, 7 September 2017

Installed Software List

Last updated 2017-09-07. Note: Click on the icons to the right of the column headings to sort the table. 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version Category Cluster
aaarf 1.0.0 Bioinformatics Zcluster Up20.png
ABINIT 6.12.1 Chemistry Zcluster Up20.png
ABySS 1.9.0 Bioinformatics Sapelo Up20.png
ABySS 1.9.0 Bioinformatics Zcluster Up20.png
ACT 03/27/2013 Bioinformatics Zcluster Up20.png
ADMIXTOOLS 1.1 Bioinformatics Zcluster Up20.png
Admixture 1.22 Bioinformatics Zcluster Up20.png
aeneas 1.7.3 Other Sapelo Up20.png
AFNI 2013.04.26 Other Zcluster Up20.png
AGE 0.4 Bioinformatics Sapelo Up20.png
Allmaps 0.6.6 Bioinformatics Sapelo Up20.png
ALLPATHS-LG 47907 Bioinformatics Zcluster Up20.png
AMBER 14 Chemistry Sapelo Up20.png
AMBER 11, 12, 14 Chemistry Zcluster Up20.png
amos 3.1.0 Bioinformatics Zcluster Up20.png
AmpliconNoise 1.25 Bioinformatics Zcluster Up20.png
Anaconda 2.2.0, 2.5.0, 3-2.2.0, 2-4.1.1 Programming Sapelo Up20.png
Anaconda 2.3.0, 2.5.0, 3-2.2.0 Programming Zcluster Up20.png
Anaconda2 4.2.0, 4.3.0, 4.4.0 Programming Sapelo Up20.png
Anaconda3 4.2.0, 4.3.0 Programming Sapelo Up20.png
Anduril 1.2.23 Bioinformatics Zcluster Up20.png
ANI 2.0 Bioinformatics Sapelo Up20.png
ANNOgesic 0.6.17 Bioinformatics Sapelo Up20.png
ANNOVAR 2015Mar22 Bioinformatics Zcluster Up20.png
ANSYS 16.2 Engineering Sapelo Up20.png
apache-ant 1.9.6 Other Sapelo Up20.png
ARB 6.0.2 Bioinformatics Zcluster Up20.png
Arlequin 3.5.1.3 Bioinformatics Zcluster Up20.png
ART 20160605 Bioinformatics Sapelo Up20.png
Aspera 3.1.0.67054 Other Zcluster Up20.png
AStalavista 3.2 Bioinformatics Sapelo Up20.png
Atlas2 1.4.3 r158 Bioinformatics Zcluster Up20.png
augustus 3.2.3 Bioinformatics Sapelo Up20.png
AUGUSTUS 3.2.3 Bioinformatics Zcluster Up20.png
BAGEL 2016.12.14, 2017.02.13 Chemistry Sapelo Up20.png
bam-readcount 0.8.0 Bioinformatics Sapelo Up20.png
BamBam 1.4 Bioinformatics Zcluster Up20.png
bam2fastq 1.1.0 Bioinformatics Zcluster Up20.png
Bamtools 2.4.0 Bioinformatics Sapelo Up20.png
Banjo 2.2.0 Bioinformatics Zcluster Up20.png
basespace-cli 0.8.10 Bioinformatics Sapelo Up20.png
Batchsub 1.0 Bioinformatics Zcluster Up20.png
BayeScan 2.1 Bioinformatics Zcluster Up20.png
Bazel 0.4.5 Other Sapelo Up20.png
BBMap 35.82 Bioinformatics Sapelo Up20.png
BBMap 35.66 Bioinformatics Zcluster Up20.png
bcl2fastq 2.17.1.14 Bioinformatics Sapelo Up20.png
bcl2fastq 1.8.4, 2.16.0.10, 2.17.1.14 Bioinformatics Zcluster Up20.png
bcl2fastq-brwnj 10262015 Bioinformatics Zcluster Up20.png
BEAST 2.4.1 Bioinformatics Sapelo Up20.png
BEAST 2.4.1 Bioinformatics Zcluster Up20.png
BEDops 2.4.14 Bioinformatics Sapelo Up20.png
BEDops 2.4.20 Bioinformatics Zcluster Up20.png
BEDTools 2.24.0, 2.25.0 2.26.0 Bioinformatics Sapelo Up20.png
BEDTools 2.24.0, 2.25.0 Bioinformatics Zcluster Up20.png
BEST 2.3.1 Bioinformatics Sapelo Up20.png
BEST 2.3.1 Bioinformatics Zcluster Up20.png
bfast 0.7.0 Bioinformatics Zcluster Up20.png
Bio++ Program Suite 2.2.0 Bioinformatics Zcluster Up20.png
bioawk 1.0 [[:Category:Bioinformatics|Bioinformatics] Sapelo Up20.png
Bioconductor 2.11, 2.13 Bioinformatics Zcluster Up20.png
BioPerl 1.6.923 Bioinformatics Sapelo Up20.png
BioPerl 1.61 Bioinformatics Zcluster Up20.png
biopy 0.1.8 Bioinformatics Zcluster Up20.png
BioPython 1.66 Bioinformatics Sapelo Up20.png
BioPython 1.64 Bioinformatics Zcluster Up20.png
biotoolbox 1.22 Bioinformatics Zcluster Up20.png
Bismark 0.16.3 Bioinformatics Sapelo Up20.png
Bismark Bisulfite Mapper 0.14.0 Bioinformatics Zcluster Up20.png
BiSS 0.0.1 Bioinformatics Zcluster Up20.png
BLAS 3.0 Math Library Zcluster Up20.png
BLASR 1.3.1 Bioinformatics Zcluster Up20.png
Blast2lca 0.8 Bioinformatics Sapelo Up20.png
Blat 36 Bioinformatics Sapelo Up20.png
Blat 3.5 Bioinformatics Zcluster Up20.png
BMGE 1.1 Bioinformatics Zcluster Up20.png
Boost 1.47.0, 1.57.0, 1.59.0 Library Sapelo Up20.png
Boost 1.54.0 Library Zcluster Up20.png
bowtie 1.1.1 Bioinformatics Sapelo Up20.png
bowtie 1.1.0 Bioinformatics Zcluster Up20.png
bowtie2 2.2.4 Bioinformatics Sapelo Up20.png
bowtie2 2.2.3, 2.2.9 Bioinformatics Zcluster Up20.png
BP&P 2.2, 3, 3.1, 3.2 Bioinformatics Zcluster Up20.png
breakdancer 1.1.2_2013_03_08 Bioinformatics Sapelo Up20.png
breakdancer 1.1.2_2013_03_08 Bioinformatics Zcluster Up20.png
bridger 2014-12-01 Bioinformatics Zcluster Up20.png
brownie 2.1.2 Bioinformatics Zcluster Up20.png
BS Seeker Dec 113 Bioinformatics Zcluster Up20.png
BS Seeker2 2.1.1 Bioinformatics Sapelo Up20.png
BS Seeker2 2.1.1 Bioinformatics Zcluster Up20.png
BUCKy 1.4.3 Bioinformatics Zcluster Up20.png
BUSCO 3.0.2 Bioinformatics Sapelo Up20.png
Burrows-Wheeler Aligner (BWA) 0.7.10, 0.7.15 Bioinformatics Sapelo Up20.png
Burrows-Wheeler Aligner (BWA) 0.7.10 Bioinformatics Zcluster Up20.png
bx-python 06/24/2013 Bioinformatics Zcluster Up20.png
cadaver 0.23.3 Bioinformatics Zcluster Up20.png
Cafe 3.1 Bioinformatics Zcluster Up20.png
Caffe 12.04.2015 Other Sapelo Up20.png
Caffe 11.26.2014 Other Zcluster Up20.png
canu 1.4 Bioinformatics Sapelo Up20.png
Canu 1.4 Bioinformatics Zcluster Up20.png
CAP-miRSeq 01/2014 Bioinformatics Zcluster Up20.png
cap3 03/09/2015 Bioinformatics Sapelo Up20.png
cap3 10/2011 Bioinformatics Zcluster Up20.png
casava 1.8.2 Bioinformatics Zcluster Up20.png
cblas 3.0 Math Library Zcluster Up20.png
cdhit 4.6.7 Bioinformatics Sapelo Up20.png
cd-hit 4.6.1 Bioinformatics Zcluster Up20.png
cdbfasta 04282012 Bioinformatics Zcluster Up20.png
cdbtools 06172013 Bioinformatics Zcluster Up20.png
CEAS 1.0.2 Bioinformatics Zcluster Up20.png
CEGMA 2.5 Bioinformatics Zcluster Up20.png
celera 8.1 Bioinformatics Zcluster Up20.png
CellProfiler 2.2.0 Bioinformatics Sapelo Up20.png
censor 4.2.29 Bioinformatics Sapelo Up20.png
Centrifuge 2.3.2 Bioinformatics Sapelo Up20.png
CFOUR 1.2, 2.00-beta Chemistry Sapelo Up20.png
CFOUR beta, 1.2 Chemistry Zcluster Up20.png
CGAT 0.2.4 Bioinformatics Sapelo Up20.png
CGmapTools 0.0.3b Bioinformatics Sapelo Up20.png
CheckM 1.0.5 Bioinformatics Sapelo Up20.png
CheckM 1.0.5 Bioinformatics Zcluster Up20.png
ChromHMM 1.0 Bioinformatics Zcluster Up20.png
Chromosomer 0.1.4a Bioinformatics Sapelo Up20.png
CIRCexplorer2 2.2.3 Bioinformatics Sapelo Up20.png
circlator 1.4.1 Bioinformatics Sapelo Up20.png
circoletto 21.10.13 Bioinformatics Zcluster Up20.png
circos 0.69 Bioinformatics Sapelo Up20.png
circos 0.64 Bioinformatics Zcluster Up20.png
cisa 20140304 Bioinformatics Sapelo Up20.png
cisgenome 2.0 Bioinformatics Zcluster Up20.png
CLAPACK 3.2.1 Math Library Zcluster Up20.png
cleaveland4 4.4 Bioinformatics Sapelo Up20.png
CLUMPP 1.1.2 Bioinformatics Zcluster Up20.png
Clustal-Omega 1.2.1 Bioinformatics Zcluster Up20.png
ClustalW2 2.1 Bioinformatics Sapelo Up20.png
ClustalW 2.1 Bioinformatics Zcluster Up20.png
CLUSTER 3.0 Bioinformatics Zcluster Up20.png
clusteringConsensus 1.02 Bioinformatics Sapelo Up20.png
cmake 2.8.12.2, 3.0.2, 3.7.2 Other Sapelo Up20.png
cnv-seq 03132017 Bioinformatics Sapelo Up20.png
CNVnator 0.3.3 Bioinformatics Sapelo Up20.png
CNVnator 0.2.7 Bioinformatics Zcluster Up20.png
cnv-seq 0.2-7 Bioinformatics Zcluster Up20.png
Coding Potential Calculator 0.9-r2 Bioinformatics Zcluster Up20.png
CoMap 1.4.1 Bioinformatics Zcluster Up20.png
Conclustador 0.4a Bioinformatics Zcluster Up20.png
Consed 28.0 Bioinformatics Zcluster Up20.png
CONSEL 0.20 Bioinformatics Sapelo Up20.png
CONSEL v0.20 Bioinformatics Zcluster Up20.png
Conspred v1.32 Bioinformatics Sapelo Up20.png
CORMA 5.21 Chemistry Zcluster Up20.png
cortex_con 0.04c Bioinformatics Zcluster Up20.png
cortex_var 1.0.5.21 Bioinformatics Sapelo Up20.png
cortex_var 1.0.5.3 Bioinformatics Zcluster Up20.png
Count 2010-04-02 Bioinformatics Zcluster Up20.png
CPLEX 12.6.3 Engineering Sapelo Up20.png
CRB-BLAST 0.3.2 Bioinformatics Zcluster Up20.png
CREST 1.0 Bioinformatics Zcluster Up20.png
CrossMap 0.2.5 Bioinformatics Sapelo Up20.png
CrossMap 0.1.5 Bioinformatics Zcluster Up20.png
ctrax 0.3.2 Other Zcluster Up20.png
CUDA 5.0.35, 6.5.14, 7.5.18, 8.0.61 Programming Sapelo Up20.png
CUDA 4.0.17, 4.2.9, 5.0.35, 6.0.37, 6.5.14 Programming Zcluster Up20.png
cufflinks 2.2.1 Bioinformatics Sapelo Up20.png
cufflinks 2.2.1 Bioinformatics Zcluster Up20.png
curl 7.15.5, 7.47.1 Other Zcluster Up20.png
cutadapt 1.9.dev1 Bioinformatics Sapelo Up20.png
cutadapt 1.9.dev1 Bioinformatics Zcluster Up20.png
CWEB 3.64 Other Zcluster Up20.png
CytoScape 3.3.0 Bioinformatics Sapelo Up20.png
Danpos2 2.2.2 Bioinformatics Sapelo Up20.png
Danpos2 2.2.2 Bioinformatics Zcluster Up20.png
datamash 1.0.7 Other Sapelo Up20.png
datamash 1.0.6 Other Zcluster Up20.png
Davinci 2.09 Bioinformatics Zcluster Up20.png
DBG2OLC 04062015 Bioinformatics Zcluster Up20.png
ddocent 2.2.16 Bioinformatics Sapelo Up20.png
ddRADseq 0.01 Bioinformatics Zcluster Up20.png
DeconSeq 0.4.3 Bioinformatics Sapelo Up20.png
DeconSeq 0.4.3 Bioinformatics Zcluster Up20.png
deepnet 20151013 Other Sapelo Up20.png
deepnet 20150820 Other Zcluster Up20.png
deeptools 2.3.1 Bioinformatics Sapelo Up20.png
deeptools 2.4.1 Bioinformatics Zcluster Up20.png
DELLY 0.7.7 Bioinformatics Sapelo Up20.png
DELLY 0.5.5 Bioinformatics Zcluster Up20.png
demuxipy 1.0 Bioinformatics Zcluster Up20.png
dendropy 3.12.0 Bioinformatics Sapelo Up20.png
depict 140721 Bioinformatics Sapelo Up20.png
detect-NAHR 2015.09.16 Bioinformatics Sapelo Up20.png
DETONATE 20140123 Bioinformatics Zcluster Up20.png
DIAMOND 0.8.36 Bioinformatics Sapelo Up20.png
DIAMOND 0.8.36 Bioinformatics Zcluster Up20.png
DISCOVAR 49856 Bioinformatics Zcluster Up20.png
DISCOVAR De Novo 52488 Bioinformatics Zcluster Up20.png
Distruct 2.2 Bioinformatics Zcluster Up20.png
diyabc 2.0.4 Bioinformatics Zcluster Up20.png
DLCoal 1.0 Bioinformatics Zcluster Up20.png
DLCpar 1.0 Bioinformatics Sapelo Up20.png
dnaclust rev54 Bioinformatics Zcluster Up20.png
dnasam 20100621 Bioinformatics Zcluster Up20.png
dDocent 1.2 Bioinformatics Zcluster Up20.png
drmma 0.5 Other Zcluster Up20.png
ea-utils 1.1.2-822 Bioinformatics Zcluster Up20.png
eclipse 4.3.1 Other, Programming Zcluster Up20.png
ECTools 08/18/2014 Other, Programming Zcluster Up20.png
edena v3.130110 Bioinformatics Zcluster Up20.png
EDGE-pro 1.3.1 Bioinformatics Zcluster Up20.png
editag 1.1 Bioinformatics Zcluster Up20.png
EMBOSS 6.5.7 Bioinformatics Sapelo Up20.png
EMBOSS 6.5.7 Bioinformatics Zcluster Up20.png
emirge 0.61.1 Bioinformatics Sapelo Up20.png
emirge 0.61.1 Bioinformatics Zcluster Up20.png
emmax beta-07Mar2010 Bioinformatics Zcluster Up20.png
emmix 1.3 Bioinformatics Zcluster Up20.png
ensembl-tools 76 Bioinformatics Zcluster Up20.png
Entrez-Direct 11/18/2016 Bioinformatics Zcluster Up20.png
EPIG-Seq v01 Bioinformatics Sapelo Up20.png
espeak 1.48.04 Other Sapelo Up20.png
ESTscan 3.0.3 Bioinformatics Zcluster Up20.png
evm (EVidenceModeler) r2012-06-25 Bioinformatics Zcluster Up20.png
exabayes 1.4.1 Bioinformatics Sapelo Up20.png
exabayes 1.2.1 Bioinformatics Zcluster Up20.png
ExaML 3.0.11 Bioinformatics Sapelo Up20.png
ExaML 315576 Bioinformatics Zcluster Up20.png
exonerate 2.2.0 Bioinformatics Sapelo Up20.png
exonerate 2.2.0 Bioinformatics Zcluster Up20.png
Expander 7.11 Bioinformatics Sapelo Up20.png
express 1.5.1 Bioinformatics Zcluster Up20.png
FALCON 0.4.0 Bioinformatics Sapelo Up20.png
FALCON 0.4.0 Bioinformatics Zcluster Up20.png
FAR 2.15 Bioinformatics Zcluster Up20.png
FASTA 36 Bioinformatics Zcluster Up20.png
fasta format cleaner 1.0 Bioinformatics Zcluster Up20.png
fastphase 1.4.0 Bioinformatics Sapelo Up20.png
fastphase 1.4.0 Bioinformatics Zcluster Up20.png
FastQC 0.11.4 Bioinformatics Sapelo Up20.png
FastQC 0.11.4 Bioinformatics Zcluster Up20.png
FASTQSim 3.0 Bioinformatics Sapelo Up20.png
fastStructure 1.0 Bioinformatics Sapelo Up20.png
fastStructure 1.0 Bioinformatics Zcluster Up20.png
FastTree 2.1.8 Bioinformatics Zcluster Up20.png
FastX 0.0.13.2, 0.0.14 Bioinformatics Sapelo Up20.png
FastX 0.0.13.2, 0.0.14 Bioinformatics Zcluster Up20.png
FastUniq 1.1 Bioinformatics Zcluster Up20.png
FCP 1.0.4 Bioinformatics Zcluster Up20.png
fc_squared 20160404 Chemistry Zcluster Up20.png
FFmpeg 2.8.2 Other Sapelo Up20.png
FFmpeg 0.10.2 Other Zcluster Up20.png
FFTbor 11.21.2014 Bioinformatics Zcluster Up20.png
FFTW 2.1.5, 3.3.4 Math Library Sapelo Up20.png
FFTW 2.1.5, 3.3.0, 3.3.3 Math Library Zcluster Up20.png
Fiji 2015/12/09 Bioinformatics Zcluster Up20.png
Find_Cns 2016/07/21 Bioinformatics Sapelo Up20.png
fineRADstructure 2016/12/09 Bioinformatics Sapelo Up20.png
FineSTRUCTURE 2.0.7 Bioinformatics Sapelo Up20.png
FIRE 1.1 Bioinformatics Zcluster Up20.png
FitModel 20140407 Bioinformatics Zcluster Up20.png
FLASH 1.2.11 Bioinformatics Sapelo Up20.png
FLASH 1.2.11 Bioinformatics Zcluster Up20.png
Flexbar 2.4 Bioinformatics Zcluster Up20.png
FragStats 2.0 Other Zcluster Up20.png
Freebayes 1.0.1 Bioinformatics Sapelo Up20.png
Freebayes 1.0.0 Bioinformatics Zcluster Up20.png
FreeSurfer 6.0.0 Medical-Informatics Sapelo Up20.png
F-Seq 1.84 Bioinformatics Zcluster Up20.png
Fsl 5.0.4 Bioinformatics Zcluster Up20.png
gam-ngs 1.1b Bioinformatics Sapelo Up20.png
gam-ngs 10/8/2013 Bioinformatics Zcluster Up20.png
GAMESS 5Dec2014 Chemistry Sapelo Up20.png
GAMESS May2012R1 with XMVB 2.0, May2013R1, 5Dec2014 Chemistry Zcluster Up20.png
GAP 4.8.7 Other, Programming Sapelo Up20.png
GapFiller 2.1.1 Bioinformatics Sapelo Up20.png
GapFiller 1.11 Bioinformatics Zcluster Up20.png
garli 2.01 Bioinformatics Zcluster Up20.png
gat 1.2 Bioinformatics Sapelo Up20.png
gatk 3.6 Bioinformatics Sapelo Up20.png
gatk 3.6 Bioinformatics Zcluster Up20.png
gatk_lite 2.3.9 Bioinformatics Sapelo Up20.png
GAUSSIAN 09 Chemistry Sapelo Up20.png
GAUSSIAN09 09 Chemistry Zcluster Up20.png
GaussView 5 Chemistry Sapelo Up20.png
GaussView 5 Chemistry Zcluster Up20.png
Gblocks 0.91b Bioinformatics Sapelo Up20.png
Gblocks 0.91b Bioinformatics Zcluster Up20.png
GBSX 1.1.4 Bioinformatics Zcluster Up20.png
GCTA 1.26.0 Bioinformatics Sapelo Up20.png
gdal 2.1.0 Library Sapelo Up20.png
gdal 1.9.2 Library Zcluster Up20.png
GDB 7.0.1 Debugger Zcluster Up20.png
GDC-client 1.0.1 Bioinformatics Sapelo Up20.png
GDC-client 1.0.1 Bioinformatics Zcluster Up20.png
gd 2.2.4 Bioinformatics Sapelo Up20.png
GEM 2.5 Bioinformatics Sapelo Up20.png
GEM 2.5 Bioinformatics Zcluster Up20.png
GEMMA 0.95alpha Bioinformatics Zcluster Up20.png
Gemini 0.20.0 Bioinformatics Sapelo Up20.png
GeneMark 4.21 Bioinformatics Zcluster Up20.png
Genome Phred version: 0.071220.c Bioinformatics Zcluster Up20.png
GenomeMapper 0.4.4 (Version for SHORE/WMD3) Bioinformatics Zcluster Up20.png
GenomeTools 1.5.9 Bioinformatics Sapelo Up20.png
GenomeTools 1.5.1 Bioinformatics Zcluster Up20.png
GenomicConsensus 0.9.0 Bioinformatics Zcluster Up20.png
gensim 2.3.0 Library Sapelo Up20.png
geos 3.5.0 Library Sapelo Up20.png
geos 3.3.3, 3.4.2 Library Zcluster Up20.png
Gimmemotifs 0.10.0b4 Bioinformatics Zcluster Up20.png
Gingr 1.0 Other Zcluster Up20.png
git 1.7.1, 2.7.0 Other Sapelo Up20.png
git 1.7.6, 1.7.11.3, 2.0.0 Other Zcluster Up20.png
GKIN 1.1 Bioinformatics Sapelo Up20.png
GKIN 1.1 Bioinformatics Zcluster Up20.png
Glimmer 3.0.2 Bioinformatics Zcluster Up20.png
GlimmerHMM 3.0.1 Bioinformatics Zcluster Up20.png
gmap-gsnap 2017-01-14 Bioinformatics Sapelo Up20.png
gmap-gsnap 2014-12-14 Bioinformatics Zcluster Up20.png
GMATA 2017-01-14 Bioinformatics Sapelo Up20.png
GMP 4.3.1, 6.0.0 Library Sapelo Up20.png
GMPFRXX 20081116 Library Sapelo Up20.png
GNU Compilers 4.4.7, 4.7.4, 5.3.0 Compiler Sapelo Up20.png
GNU Compilers 4.1.2, 4.4.7, 4.5.3, 4.7.1, 5.3.0 Compiler Zcluster Up20.png
GNUMAP 3.0.2 Bioinformatics Zcluster Up20.png
gnuplot 4.2.6 Bioinformatics Sapelo Up20.png
gnuplot 4.0, 4.6.0 Graphics Zcluster Up20.png
gprof 2.17 Profiler Zcluster Up20.png
gpu-blast 1.1 with ncbi-blast-2.2.25+ Bioinformatics Zcluster Up20.png
grace 5.1.25 Graphics Sapelo Up20.png
grace 5.1.22 Graphics Zcluster Up20.png
GrADS 2.1a3 Other Sapelo Up20.png
GraftM 0.10.1 Bioinformatics Sapelo Up20.png
GraPhlAn 0.9.7 Graphics Zcluster Up20.png
Gromacs 5.0.2, 5.1.3 Chemistry Sapelo Up20.png
Gromacs 4.5.5, 4.6.1 Chemistry Zcluster Up20.png
GSL 1.16 Math Library Sapelo Up20.png
GSL 1.9, 1.15, 1.16 Math Library Zcluster Up20.png
gss Bioinformatics Zcluster Up20.png
h5py 2.6.0 Other Sapelo Up20.png
hapcut2 20170126 Bioinformatics Sapelo Up20.png
Haplomerger2 20151124 Bioinformatics Zcluster Up20.png
Haploview 4.2 Bioinformatics Sapelo Up20.png
Hapmix 2 Bioinformatics Zcluster Up20.png
harp 130306_105556 Bioinformatics Sapelo Up20.png
HARP 130306_105556 Bioinformatics Zcluster Up20.png
HDF5 1.8.6, 1.8.14 Library Sapelo Up20.png
HDF5 1.6.4, 1.8.9 Library Zcluster Up20.png
HH-suite 3.0 Bioinformatics Sapelo Up20.png
HH-Suite 2.0.16 Library Zcluster Up20.png
hic-pro 2.8.0 Bioinformatics Sapelo Up20.png
HiCUP 0.5.9 Bioinformatics Sapelo Up20.png
HINGE 032717 Bioinformatics Sapelo Up20.png
HipMer 0.9.4 Bioinformatics Sapelo Up20.png
HISAT2 2.1.0 Bioinformatics Sapelo Up20.png
Hmmer 3.1b2 Bioinformatics Sapelo Up20.png
Hmmer 3.1b1 Bioinformatics Zcluster Up20.png
Homer 4.8 Bioinformatics Sapelo Up20.png
Homer 4.8 Bioinformatics Zcluster Up20.png
hotspot 5 Bioinformatics Zcluster Up20.png
htseq 0.6.1p1 Bioinformatics Sapelo Up20.png
htseq 0.5.3p3, 0.6.1p1 Bioinformatics Zcluster Up20.png
HUMAnN2 0.6.1 Bioinformatics Sapelo Up20.png
HyDe 1.0 Bioinformatics Sapelo Up20.png
HyPhy 2.2.1 Bioinformatics Zcluster Up20.png
IDBA-MT 1.1.0 Bioinformatics Zcluster Up20.png
IDBA 1.1.2 Bioinformatics Sapelo Up20.png
IDBA-UD 1.1.1 Bioinformatics Zcluster Up20.png
igb 6.7.3 Bioinformatics Zcluster Up20.png
igraph 0.7.1 Bioinformatics Zcluster Up20.png
IGV 2.3.81 Bioinformatics Sapelo Up20.png
IGV 2.1.23 Bioinformatics Zcluster Up20.png
IGVTools 2.3.81 Bioinformatics Sapelo Up20.png
IGVTools 2.3.14 Bioinformatics Zcluster Up20.png
illumiprocessor 2.0.7 Bioinformatics Sapelo Up20.png
IMa2 8.27.12 Bioinformatics Zcluster Up20.png
indel-Seq-Gen 2.02 Bioinformatics Zcluster Up20.png
Infernal 1.1.1 Bioinformatics Zcluster Up20.png
InStruct 3.2.09 Bioinformatics Zcluster Up20.png
Intel Compilers 14.0.0, 15.0.2 Compiler Sapelo Up20.png
Intel Compilers 2013 SP1 Compiler Zcluster Up20.png
iprscan (InterProScan) 5.16-55.0 Bioinformatics Sapelo Up20.png
iprscan (InterProScan) 5.9-50.0 Bioinformatics Zcluster Up20.png
ipyrad 0.3.7, 0.5.15, 0.7.3 Bioinformatics Sapelo Up20.png
IQ-Tree 1.5.3 Bioinformatics Zcluster Up20.png
iRep 1.10 Bioinformatics Sapelo Up20.png
iRODS 4.2.0 Other Zcluster Up20.png
iscan 1.0.0 Bioinformatics Zcluster Up20.png
I-TASSER 5.0 Bioinformatics Sapelo Up20.png
ITK 3.20.1 Other Zcluster Up20.png
iva 1.0.3 Bioinformatics Sapelo Up20.png
iva 1.0.3 Bioinformatics Zcluster Up20.png
JAGS 3.4.0, 4.1.0, 4.2.0 Statistics Sapelo Up20.png
JAGS 3.3.0, 4.1.0 Statistics Zcluster Up20.png
JasPer 1.900.1 Other Sapelo Up20.png
JasPer 1.900.1 Other Zcluster Up20.png
Java 6, 7, 8 Programming Sapelo Up20.png
Java 6, 7, 8 Programming Zcluster Up20.png
Jellyfish 2.2.3 Bioinformatics Sapelo Up20.png
Jellyfish 2.1.1 Bioinformatics Zcluster Up20.png
JModelTest 2.1.4 Bioinformatics Zcluster Up20.png
Julia 0.3.0-beta, 0.3.3 Programming Zcluster Up20.png
Jupyter Notebook 2.5.0 Programming Sapelo Up20.png
Jupyter Notebook 2.5.0 Programming Zcluster Up20.png
k-link 03 27, 2009 Bioinformatics Zcluster Up20.png
kallisto 0.42.5 Bioinformatics Zcluster Up20.png
kallisto 0.42.5 Bioinformatics Sapelo Up20.png
Kat 1.0.6 Bioinformatics Zcluster Up20.png
keras 1.0.8, 2.0.4 Other Sapelo Up20.png
keras 1.0.8 Other zcluster Up20.png
KisSplice 2.2.1 Bioinformatics Zcluster Up20.png
Kraken 0.10.5-beta Bioinformatics Sapelo Up20.png
Kraken 0.10.5-beta Bioinformatics Zcluster Up20.png
KmerGenie 1.7016 Bioinformatics Sapelo Up20.png
KmerGenie 1.5393 Bioinformatics Zcluster Up20.png
Lagrange 20130526 Bioinformatics Zcluster Up20.png
LAMMPS 16Aug13, 5Sep14, 10Aug15, 7Dec15, 16Feb16, 30Jul16, 17Nov16 Chemistry Sapelo Up20.png
LAMMPS 23Sep13, 5Sep14, 10Aug15 Chemistry Zcluster Up20.png
LAPACK 3.0, 3.4.2 Math Library Zcluster Up20.png
LAST 719 Bioinformatics Sapelo Up20.png
LASTZ 1.02.00, 1.03.73 Bioinformatics Sapelo Up20.png
LASTZ 1.03.02 Bioinformatics Zcluster Up20.png
LCS 1.0 Bioinformatics Zcluster Up20.png
LDDist 1.3.2 Bioinformatics Zcluster Up20.png
LDhat 2.2 Bioinformatics Sapelo Up20.png
LDhelmet 1.7 Bioinformatics Sapelo Up20.png
LDhot 0.4 Bioinformatics Sapelo Up20.png
LEfSe 20160621 Bioinformatics Sapelo Up20.png
LEfSe 20160621 Bioinformatics zcluster Up20.png
Lep-Map2 0.2 Bioinformatics Zcluster Up20.png
libradtran 1.7, 2.0.1 Other Sapelo Up20.png
librosa 0.4.3 Other Sapelo Up20.png
libsequence 1.7.4 Bioinformatics Zcluster Up20.png
LIBSVM 3.21 Other Sapelo Up20.png
LIBSVM 3.17 Other Zcluster Up20.png
Lighter 06192015 Bioinformatics Zcluster Up20.png
LLVM-Clang 3.1 Compiler Zcluster Up20.png
lmod 5.8 Other Sapelo Up20.png
LoFreq 2.1.2 Bioinformatics Sapelo Up20.png
LoFreq 2.1.2 Bioinformatics Zcluster Up20.png
lsa 11182011 Bioinformatics Zcluster Up20.png
LUMPY 0.2.13 Bioinformatics Sapelo Up20.png
MACS2 2.1.1 Bioinformatics Sapelo Up20.png
macs 1.4.2 Bioinformatics Zcluster Up20.png
macs2 2.1.0.20140616 Bioinformatics Zcluster Up20.png
MaCS-simulator 0.5d Bioinformatics Sapelo Up20.png
Mafft 7.273-e Bioinformatics Sapelo Up20.png
Mafft 7.029-e Bioinformatics Zcluster Up20.png
mageck-vispr 02242017 Bioinformatics Sapelo Up20.png
mageck 0.5 Bioinformatics Sapelo Up20.png
Magma 2.22-9 Other Sapelo Up20.png
Magma 2.21-3 Other Zcluster Up20.png
Mahotas 1.4.3 Bioinformatics Sapelo Up20.png
maker 2.31.7 Bioinformatics Zcluster Up20.png
Maple 16 Other, Programming, Graphics Zcluster Up20.png
MapSplice2 2.1.7 Bioinformatics Zcluster Up20.png
MAQ 0.7.1 Bioinformatics Zcluster Up20.png
MARDIGRAS 3.21 Chemistry Zcluster Up20.png
MaSuRCA 3.1.3 Bioinformatics Sapelo Up20.png
MaSuRCA 2.3.0 Bioinformatics Zcluster Up20.png
MATS 3.0.9 Bioinformatics Zcluster Up20.png
Mathematica 9.0 (currently not available) Other, Programming , Graphics Zcluster Up20.png
Matlab R2015aSP1, R2015b, R2016b Other, Programming, Graphics Sapelo Up20.png
MatLab R2012a (7.14), R2013a (8.1) Other, Programming, Graphics Zcluster Up20.png
Mauve snapshot_2015-02-13 Bioinformatics Zcluster Up20.png
MAVEN-genome 682, 769, 774 Bioinformatics Zcluster Up20.png
MaxBin 2.1.1 Bioinformatics Sapelo Up20.png
MCScanX 0.8 Bioinformatics Sapelo Up20.png
MCScanX-transposed 0.8 Bioinformatics Sapelo Up20.png
MCScanX 10/18/2013 Bioinformatics Zcluster Up20.png
MCL 12-135 Bioinformatics Zcluster Up20.png
MDEnergy 2.3 Chemistry Sapelo Up20.png
MEAD 2.2.9 Chemistry Zcluster Up20.png
MEGA 7.0.18 Bioinformatics Zcluster Up20.png
Megahit 1.1.1 Bioinformatics Sapelo Up20.png
Megahit 1.0.2 Bioinformatics Zcluster Up20.png
MeGAMerge 1.0 Bioinformatics Zcluster Up20.png
MEGAN 6.4.3 Bioinformatics Sapelo Up20.png
megan 5.5.3 Bioinformatics Zcluster Up20.png
MEME 4.10.2, 4.11.0 Bioinformatics Sapelo Up20.png
MEME 4.10.0 Bioinformatics Zcluster Up20.png
MEMo 1.1 Bioinformatics Zcluster Up20.png
Meraculous 2.0 Bioinformatics Sapelo Up20.png
Meraculous 2.0 Bioinformatics Zcluster Up20.png
Mercurial 3.9 Other Sapelo Up20.png
MetaBAT 20151110 Bioinformatics Sapelo Up20.png
Metal 20110325 Bioinformatics Sapelo Up20.png
MetaMOS v1.5rc1 Bioinformatics Zcluster Up20.png
Metaphlan2 2.0 Bioinformatics Zcluster Up20.png
metaseq 0.5.6 Bioinformatics Zcluster Up20.png
Metavelvet 1.2.02 Bioinformatics Sapelo Up20.png
Metavelvet 1.2.02 Bioinformatics Zcluster Up20.png
MetavelvetSL 1.0 Bioinformatics Sapelo Up20.png
metaxa2 2.1.3 Bioinformatics Zcluster Up20.png
MethPipeline 0.1_120115 Bioinformatics Sapelo Up20.png
methylpy 08/25/2016 Bioinformatics Sapelo Up20.png
METIS 4.0.3, 5.1.0 Math Library Zcluster Up20.png
MGA 1.5.4 Bioinformatics Zcluster Up20.png
MHAP 2.1.1 Bioinformatics Sapelo Up20.png
Migrate 3.6.11 Bioinformatics Sapelo Up20.png
Migrate 3.5.1 Bioinformatics Zcluster Up20.png
Minia 1.4683 Bioinformatics Zcluster Up20.png
Minimac3 2.0.1 Bioinformatics Sapelo Up20.png
MIRA 3.9.9 Bioinformatics Zcluster Up20.png
MIRA 3.9.9 Bioinformatics Zcluster Up20.png
mirdeep-p 1.3 Bioinformatics Sapelo Up20.png
MISO 09132016 Bioinformatics Zcluster Up20.png
MISO 09132016 Bioinformatics Zcluster Up20.png
MITE-Hunter 11-2011 Bioinformatics Zcluster Up20.png
MixMapper 2.0 Bioinformatics Zcluster Up20.png
MKL 11.1, 11.2 Math Library Sapelo Up20.png
MKL 11.0 Math Library Zcluster Up20.png
mlehot 1.8.16 Bioinformatics Sapelo Up20.png
MOABS 1.3.2 Bioinformatics Sapelo Up20.png
MOABS 1.2.9 Bioinformatics Zcluster Up20.png
MOCAT 1.3r2 Bioinformatics Sapelo Up20.png
Modeller 9.16 Bioinformatics Zcluster Up20.png
MONO 3.0.3 Other, Programming Zcluster Up20.png
MOSAIK 2.2.24 Bioinformatics Zcluster Up20.png
MOTECC qmdcp 90 Chemistry Zcluster Up20.png
MOTHUR 1.37.5, 1.39.5 Bioinformatics Sapelo Up20.png
MOTHUR 1.37.1 Bioinformatics Zcluster Up20.png
MP-EST 1.5 Bioinformatics Sapelo Up20.png
MP-EST 1.2 Bioinformatics Zcluster Up20.png
mpeg2vidcodec 12 Category:Other Zcluster Up20.png
MPFR 3.1.2 Library Sapelo Up20.png
MPFRC++ 3.6.2 Library Sapelo Up20.png
mpi4py 1.3 Programming Zcluster Up20.png
mpiblast 1.6.0 Bioinformatics Zcluster Up20.png
Mplus 7.4 Statistics Sapelo Up20.png
MrBayes 3.2.6 Bioinformatics Sapelo Up20.png
MrBayes 3.2.5 Bioinformatics Zcluster Up20.png
MrDemuxy 1.2.0 Bioinformatics Sapelo Up20.png
mrfast 2.5.0.4 Bioinformatics Zcluster Up20.png
MSA 3.8.1b Bioinformatics Zcluster Up20.png
MSG 0.4.3 Bioinformatics Zcluster Up20.png
MSTMap 20160408 Bioinformatics Zcluster Up20.png
MultiLoc2 26-10-2009 Bioinformatics Sapelo Up20.png
MultiLoc2 26-10-2009 Bioinformatics Zcluster Up20.png
MultiSplice 0.10 Bioinformatics Zcluster Up20.png
MUMmer 3.23 Bioinformatics Sapelo Up20.png
MUMmer 3.22 Bioinformatics Zcluster Up20.png
MUMPS 4.10.0 Math Library Zcluster Up20.png
MUSCLE 3.8.31 Bioinformatics Sapelo Up20.png
MUSCLE 3.8.31 Bioinformatics Zcluster Up20.png
MyScanACE 04232012 Bioinformatics Zcluster Up20.png
MuTect 1.1.5 Bioinformatics Zcluster Up20.png
NAMD 2.11 Chemistry Sapelo Up20.png
NAMD 2.9 Chemistry Zcluster Up20.png
NCBI Blast 2.2.26 Bioinformatics Sapelo Up20.png
NCBI Blast 2.2.26 Bioinformatics Zcluster Up20.png
NCBI Blast + 2.2.29 Bioinformatics Sapelo Up20.png
NCBI Blast + 2.2.29 Bioinformatics Zcluster Up20.png
ncbi blast parsers 1.0 Bioinformatics Zcluster Up20.png
ncbi_toolkit 12.0.0 Bioinformatics Zcluster Up20.png
NETCDF 3.6.3, 4.1.3, 4.3.2 Library Sapelo Up20.png
NETCDF 3.6.3, 4.1.3 Library Zcluster Up20.png
netCDF4-python 1.0.5 Library Zcluster Up20.png
netlogo 5.0 Other Zcluster Up20.png
Newbler 2.6 Bioinformatics Sapelo Up20.png
Newbler 2.6 Bioinformatics Zcluster Up20.png
Newick-utils 1.6 Bioinformatics Zcluster Up20.png
ngopt 20140604 Bioinformatics Zcluster Up20.png
ngsplot 2.6.1 Bioinformatics Zcluster Up20.png
NGS-QC Toolkit 2.3.3 Bioinformatics Sapelo Up20.png
NGS QC Toolkit 2.3.3 Bioinformatics Zcluster Up20.png
Ngsutils 0.5.9 Bioinformatics Sapelo Up20.png
Ngsutils 0.5.0c Bioinformatics Zcluster Up20.png
NH PhyloBayes 0.2.3 Bioinformatics Zcluster Up20.png
nhPhyML 01/2012 Bioinformatics Zcluster Up20.png
NovelSeq 1.0.2 Bioinformatics Zcluster Up20.png
NovoAlign 2.07.18 Bioinformatics Zcluster Up20.png
NPUTE v1 Bioinformatics Zcluster Up20.png
nseg 04182013 Bioinformatics Zcluster Up20.png
numexp 1.4.2 Other Zcluster Up20.png
NWCHEM 6.5 Chemistry Sapelo Up20.png
NWCHEM 6.3.2 Chemistry Zcluster Up20.png
NxTrim v0.3.2-alpha Bioinformatics Sapelo Up20.png
NxTrim 0.3.1-alpha Bioinformatics Zcluster Up20.png
Oases 0.2.02, 0.2.8 Bioinformatics Zcluster Up20.png
Octave 4.0.3 Other, Programming, Graphics Sapelo Up20.png
OligoArray 2.1 Bioinformatics Zcluster Up20.png
OligoArrayAux 3.8 Bioinformatics Zcluster Up20.png
Oligotyping 2.1 Bioinformatics Zcluster Up20.png
opal 2.0.0 Bioinformatics Zcluster Up20.png
Open Babel 2.3.1 Chemistry Zcluster Up20.png
OpenBUGS 3.2.3 Statistics Sapelo Up20.png
OpenBUGS 3.2.2 Statistics Zcluster Up20.png
OpenCL 1.0, 1.1 Programming Zcluster Up20.png
OpenCV 3.0 Other Sapelo Up20.png
OpenCV 2.3.1, 2.4.4 Other Zcluster Up20.png
OpenSees 2015.02.26 Other Zcluster Up20.png
opera 2.0.6 Bioinformatics Sapelo Up20.png
opera 1.3.1 Bioinformatics Zcluster Up20.png
Oqtans 0.1 Bioinformatics Zcluster Up20.png
ORCA 3.0.3, 4.0.0 Chemistry Sapelo Up20.png
ORCA 3.0.3 Chemistry Zcluster Up20.png
Orthagogue 1.0.3 Bioinformatics Zcluster Up20.png
OrthoFiller 1.1.4 Bioinformatics Sapelo Up20.png
OrthoFinder 1.0.8 Bioinformatics Zcluster Up20.png
OrthoMCL 2.0.9 Bioinformatics Zcluster Up20.png
OSPREY 2.0 Bioinformatics Zcluster Up20.png
p4 r231 Bioinformatics Zcluster Up20.png
p7zip 9.20.1 Other Zcluster Up20.png
PacBioToCA 8.2beta-binary Bioinformatics Zcluster Up20.png
pagan 0.39 Bioinformatics Zcluster Up20.png
pagit v1 Bioinformatics Zcluster Up20.png
Pairfq 0.14.1 Bioinformatics Zcluster Up20.png
palfinder 0.02.04 Bioinformatics Sapelo Up20.png
paml 4.8 Bioinformatics Sapelo Up20.png
PAML 4.8 Bioinformatics Zcluster Up20.png
pandas 0.16.0 Other Sapelo Up20.png
pandaseq 2.0 Bioinformatics Zcluster Up20.png
Papara_nt 2.1.2 Bioinformatics Zcluster Up20.png
ParMETIS 3.2.0, 4.0.3 Math Library Zcluster Up20.png
Paradigm 0.1-9 Bioinformatics Zcluster Up20.png
Paradigmshift 1.0 Bioinformatics Zcluster Up20.png
Parseq 02 Bioinformatics Zcluster Up20.png
ParseRNAseq 1.0 Bioinformatics Zcluster Up20.png
PartitionFinder 2.0.0-pre11 Bioinformatics Zcluster Up20.png
PASA 2.0.2 Bioinformatics Zcluster Up20.png
PASHA 1.0.6 Bioinformatics Zcluster Up20.png
PASTA 1.6.4 Bioinformatics Sapelo Up20.png
PASTA 1.6.4 Bioinformatics Zcluster Up20.png
PatMaN 1.2.2 Bioinformatics Zcluster Up20.png
Paup 4a147 Bioinformatics Sapelo Up20.png
pbh5tools 0.8.0 Bioinformatics Zcluster Up20.png
PBSuite 15.8.24 Bioinformatics Sapelo Up20.png
PBSuite 15.2.20 Bioinformatics Zcluster Up20.png
Peakranger 1.18 Bioinformatics Sapelo Up20.png
PEAR 0.9.6 Bioinformatics Zcluster Up20.png
Perl 5.24.0-thread Programming Sapelo Up20.png
Perl 5.14.1 Programming Zcluster Up20.png
perM 0.4.0 Bioinformatics Zcluster Up20.png
PETSc 3.7.6 Math Library Sapelo Up20.png
PETSc 3.1-p8, 3.4.2 Math Library Zcluster Up20.png
Pfam_scan 04282012 Bioinformatics Zcluster Up20.png
pftools 2.3.5 Bioinformatics Zcluster Up20.png
PGDBG 12.10 Debugger Zcluster Up20.png
PGI Compilers 2014 Compiler Sapelo Up20.png
PGI Compilers 2010, 2011, 2012, 2013, 2014 Compiler Zcluster Up20.png
PGPROF 12.10 Profiler Zcluster Up20.png
PHASE 2.1.1 Bioinformatics Sapelo Up20.png
PHASE 2.1.1.linux Bioinformatics Zcluster Up20.png
phaser 1.2.0 Bioinformatics Sapelo Up20.png
phobius 1.01 Bioinformatics Zcluster Up20.png
phred/phrap/conced Bioinformatics Zcluster Up20.png
Phyldog Bioinformatics Zcluster Up20.png
Phylip 3.69 Bioinformatics Zcluster Up20.png
PhyML 3.0 Bioinformatics Sapelo Up20.png
PhyloBayes 3.3b Bioinformatics Zcluster Up20.png
PhyloBayes-MPI 1.7 Bioinformatics Sapelo Up20.png
PhyloBayes-MPI 1.3b, 1.4e Bioinformatics Zcluster Up20.png
PhyloNet 3.6.0 Bioinformatics Sapelo Up20.png
PhyloNet 3.6.1 Bioinformatics Zcluster Up20.png
phyluce 1.5.0 Bioinformatics Sapelo Up20.png
PhyML 3.0 Bioinformatics Sapelo Up20.png
PHYML 20110919 Bioinformatics Zcluster Up20.png
picard 2.1.1, 2.4.1 Bioinformatics Sapelo Up20.png
picard 1.137 Bioinformatics Zcluster Up20.png
picrust 1.1.0 Bioinformatics Sapelo Up20.png
picrust 1.0.0 Bioinformatics Zcluster Up20.png
pigz 2.3.4 Other Sapelo Up20.png
pileup 0.6 Bioinformatics Zcluster Up20.png
Pilon 1.21 Bioinformatics Sapelo Up20.png
pindel 0.2.4t Bioinformatics Zcluster Up20.png
pIRS 2.0.2 Bioinformatics Sapelo Up20.png
pknotsRG 1.3 Bioinformatics Zcluster Up20.png
platanus 1.2.1 Bioinformatics Zcluster Up20.png
platypus 0.8.1 Bioinformatics Sapelo Up20.png
PLEK 1.2 Bioinformatics Sapelo Up20.png
plink 1.07, 1.9-beta3 Bioinformatics Sapelo Up20.png
plink 1.07, 1.9-beta3 Bioinformatics Zcluster Up20.png
popbam 0.3 Bioinformatics Zcluster Up20.png
portaudio 19 Other Sapelo Up20.png
prank 100802 Bioinformatics Zcluster Up20.png
PRATT 2.1 Bioinformatics Sapelo Up20.png
Primer3 2.0.0-alpha Bioinformatics Sapelo Up20.png
Primer3 2.3.4 Bioinformatics Zcluster Up20.png
PRINSEQ 0.20.4 Bioinformatics Sapelo Up20.png
PRINSEQ 0.20.3 Bioinformatics Zcluster Up20.png
ProbABEL 0.5.0 Bioinformatics Sapelo Up20.png
proovread 2.12 Bioinformatics Sapelo Up20.png
proovread 2.12 Bioinformatics Zcluster Up20.png
Prokka 1.11 Bioinformatics Sapelo Up20.png
Prokka 1.11 Bioinformatics Zcluster Up20.png
protobuf 2.4.1, 2.6.1, 3.0.0-beta1 Other Sapelo Up20.png
protobuf 2.6.1 Other Zcluster Up20.png
Prottest3 3.4.2 Bioinformatics Sapelo Up20.png
Prottest3 3.2.1 Bioinformatics Zcluster Up20.png
psmc 0.6.4-r33 Bioinformatics Zcluster Up20.png
ptRNApred 1.0 Bioinformatics Zcluster Up20.png
PuMA 0.904 Bioinformatics Zcluster Up20.png
pybedtools 09/22/2016 Bioinformatics Sapelo Up20.png
pyDNase 0.2.5 Bioinformatics Sapelo Up20.png
pyfasta 0.5.2 Bioinformatics Sapelo Up20.png
pyfasta 0.5.2 Other, Programming Zcluster Up20.png
pydev 3.3.3 Other, Programming Zcluster Up20.png
pyDNase 0.2.3 Bioinformatics Zcluster Up20.png
pymol 1.8.2 Other, Graphics Zcluster Up20.png
pynast 1.2 Bioinformatics Zcluster Up20.png
PyNIO 1.4.1 Other Zcluster Up20.png
pyRAD 3.0.64 Bioinformatics Sapelo Up20.png
pyRAD 3.0.61 Bioinformatics Zcluster Up20.png
pysam 0.8.1 Bioinformatics Zcluster Up20.png
PyTables 2.3.1 Bioinformatics Zcluster Up20.png
Python 2.6.6, 2.7.8, 2.7.13, 3.4.3, 3.5.1 Programming Sapelo Up20.png
Python 2.4.3, 2.7.2, 2.7.8, 3.3.0. 3.4.0 Programming Zcluster Up20.png
PyTorch 0.1.9, 0.1.11 Other Sapelo Up20.png
Qiime 1.9.1 Bioinformatics Sapelo Up20.png
Qiime 1.7.0 Bioinformatics Zcluster Up20.png
qeseq 0.2.2 Bioinformatics Zcluster Up20.png
QT 4.8.5 Other Zcluster Up20.png
QTL Cartographer 1.17j Bioinformatics Zcluster Up20.png
quake 0.3.4 Bioinformatics Zcluster Up20.png
QUAST 4.5 Bioinformatics Sapelo Up20.png
quast 3.1, 4.3 Bioinformatics Zcluster Up20.png
Quantum Espresso 5.4.0 Chemistry Sapelo Up20.png
Quantum Espresso 4.3.2, 5.0.2 Chemistry Zcluster Up20.png
R 3.1.2, 3.2.1, 3.2.3, 3.3.1 Statistics Sapelo Up20.png
R 2.14.0, 2.15.0, 2.15.2, 3.0.0, 3.0.2, 3.0.3, 3.1.0, 3.1.1, 3.2.0, 3.2.3, 3.3.0, 3.3.2 Statistics Zcluster Up20.png
RACA 0.9.1.1 Bioinformatics Zcluster Up20.png
racon 20161214 Bioinformatics Sapelo Up20.png
radcap 1.0.0 Bioinformatics Zcluster Up20.png
RADnome 0.0.1-7-25 Bioinformatics Zcluster Up20.png
RANDFOLD 2.0 Bioinformatics Zcluster Up20.png
RAPSearch2 2.23 Bioinformatics Sapelo Up20.png
RAPSearch2 2.17 Bioinformatics Zcluster Up20.png
RATT 1.0 Bioinformatics Zcluster Up20.png
RAxML 8.2.4 Bioinformatics Sapelo Up20.png
RAxML 8.2.4 Bioinformatics Zcluster Up20.png
RAxML-Light 1.0.5 Bioinformatics Zcluster Up20.png
Ray 2.3.1 Bioinformatics Sapelo Up20.png
RCCBatchBlast 5.0 Bioinformatics Zcluster Up20.png
RCCBatchBlastPlus 1.0 Bioinformatics Zcluster Up20.png
RDPTools 2.2.0 Bioinformatics Sapelo Up20.png
READemption 0.3.7 Bioinformatics Sapelo Up20.png
RED 1.0 Bioinformatics Sapelo Up20.png
REAPR 1.0.18 Bioinformatics Sapelo Up20.png
REAPR 1.0.16 Bioinformatics Zcluster Up20.png
RECON 1.08 Bioinformatics Zcluster Up20.png
REPCLASS 1.0.1 Bioinformatics Sapelo Up20.png
repdenovo 02232017 Bioinformatics Sapelo Up20.png
RepeatExplorer 02/2015 Bioinformatics Sapelo Up20.png
RepeatExplorer 02/2015 Bioinformatics Zcluster Up20.png
RepeatExplorer-TAREAN 12/13/2016, 01/10/2017 Bioinformatics Sapelo Up20.png
Repeatmasker 4.0.5 Bioinformatics Sapelo Up20.png
Repeatmasker 4.0.5 Bioinformatics Zcluster Up20.png
Repeatmodeler 1.0.8 Bioinformatics Sapelo Up20.png
Repeatmodeler 1.0.8 Bioinformatics Zcluster Up20.png
Reptile 1.1 Bioinformatics Zcluster Up20.png
RepeatScout 1.05 Bioinformatics Zcluster Up20.png
RES-Scanner 20170726 Bioinformatics Sapelo Up20.png
Revbayes 1.0.5 Bioinformatics Sapelo Up20.png
riboPicker 0.4.3 Bioinformatics Zcluster Up20.png
RIP 4 Other Zcluster Up20.png
RITA 1.0.1 Bioinformatics Zcluster Up20.png
RMBlast 2.2.27 Bioinformatics Zcluster Up20.png
Rmpi 0.6-6 Programming Sapelo Up20.png
Rmpi 0.5-9, 0.6-1, 0.6-3, 0.6-5, 0.6-6 Programming Zcluster Up20.png
RNA-SeQC 1.1.8 Bioinformatics Zcluster Up20.png
RNAmmer 1.2 Bioinformatics Sapelo Up20.png
RNAmmer 1.2 Bioinformatics Zcluster Up20.png
RNAprof 2.0 Bioinformatics Zcluster Up20.png
rnaQUAST 0.3.0 Bioinformatics Zcluster Up20.png
RNAshapes 2.1.6 Bioinformatics Zcluster Up20.png
RNAz 2.1 Bioinformatics Zcluster Up20.png
rnnotator 2.4.12 Bioinformatics Zcluster Up20.png
Roary 3.8 Bioinformatics Sapelo Up20.png
Roche 2.6 Bioinformatics Zcluster Up20.png
Rockhopper 2.0.2 Bioinformatics Zcluster Up20.png
RogueNaRok 1.0 Bioinformatics Zcluster Up20.png
Rosetta 2016.15.58628, 2017.26.59567 Chemistry Sapelo Up20.png
ROOT 5.34.09 Library Zcluster Up20.png
rpy 1.0.3 Other Zcluster Up20.png
rpy2 2.4.3 Other Zcluster Up20.png
RSAT (RSA-tools) 1.0 Bioinformatics Zcluster Up20.png
RSEM 1.2.20 Bioinformatics Sapelo Up20.png
RSEM 1.3.0 Bioinformatics Zcluster Up20.png
RSEG 0.4.8NC Bioinformatics Zcluster Up20.png
RSeQC 2.6.4 Bioinformatics Sapelo Up20.png
RSeQC 2.6.3 Bioinformatics Zcluster Up20.png
rspr 1.2.2 Other Zcluster Up20.png
RUM 1.11 Bioinformatics Zcluster Up20.png
Sabre 02/03/2017 Other Sapelo Up20.png
Sage 7.4 Other Sapelo Up20.png
Sage 6.3 Other Zcluster Up20.png
sailfish 0.6.3 Bioinformatics Zcluster Up20.png
Salmon 0.6.1-pre Bioinformatics Sapelo Up20.png
sam2pairwise 1.0.0 Bioinformatics Sapelo Up20.png
sambamba 0.4.7 Bioinformatics Zcluster Up20.png
samblaster 0.1.15 Bioinformatics Zcluster Up20.png
samtools 1.3.1 Bioinformatics Sapelo Up20.png
samtools 1.2 Bioinformatics Zcluster Up20.png
SATé 2.2.7 Bioinformatics Sapelo Up20.png
SATé 2.2.7 Bioinformatics Zcluster Up20.png
sbt 0.13.12 Other, Programming Sapelo Up20.png
sbt 0.13.9 Other, Programming Zcluster Up20.png
scala 2.10.6, 2.11.7, 2.12.0-RC1, 2.12.1 Other, Programming Sapelo Up20.png
scala 2.11.7, 2.12.0-M3 Other, Programming Zcluster Up20.png
ScaLAPACK 2.0.2 Math Library Sapelo Up20.png
ScaLAPACK 2.0.2 Math Library Zcluster Up20.png
scalpel 0.5.3 Bioinformatics Sapelo Up20.png
Scripture 3/20/2015 Bioinformatics Sapelo Up20.png
Scripture 3/20/2015 Bioinformatics Zcluster Up20.png
SEAStAR 0.4.8 Bioinformatics Zcluster Up20.png
segemehl 0.1.9 Bioinformatics Zcluster Up20.png
Seq-Gen 1.3.3 Bioinformatics Sapelo Up20.png
seqMINER 1.3.3e Bioinformatics Zcluster Up20.png
seqtk 1.0-r63-dirty Bioinformatics Sapelo Up20.png
seqtk 1.0-r63-dirty Bioinformatics Zcluster Up20.png
SEQuel 1.0.2 Bioinformatics Zcluster Up20.png
sga 0.10.14 Bioinformatics Sapelo Up20.png
shapeit v2.r837 Bioinformatics Sapelo Up20.png
SHE-RA 012012 Bioinformatics Zcluster Up20.png
SHORE 0.9.3 Bioinformatics Sapelo Up20.png
SHORE 0.9.3 Bioinformatics Zcluster Up20.png
SHOREmap 2.0, 3.0 Bioinformatics Zcluster Up20.png
sicer 1.1 Bioinformatics Sapelo Up20.png
sicer 1.1 Bioinformatics Zcluster Up20.png
sickle 1.33 Bioinformatics Sapelo Up20.png
sickle 1.33 Bioinformatics Zcluster Up20.png
SigHunt 1.0 Bioinformatics Zcluster Up20.png
SignalIP 4.1c Bioinformatics Zcluster Up20.png
SInC-simulator 2017.06.06 Bioinformatics Sapelo Up20.png
SINE_Scan 1.1.1 Bioinformatics Sapelo Up20.png
SISRS 1.0 Bioinformatics Zcluster Up20.png
SiZer 07022012 Bioinformatics Zcluster Up20.png
slclust 04282012 Bioinformatics Zcluster Up20.png
SMRT-Analysis 2.3.0 Bioinformatics Sapelo Up20.png
SMRT-Analysis 2.3.0 Bioinformatics Zcluster Up20.png
snakemake 4.0.0 Bioinformatics Sapelo Up20.png
SNAP 2010-7-28 Bioinformatics Zcluster Up20.png
SNAPP 1.1.4 Bioinformatics Zcluster Up20.png
SnoReport 1.3 Bioinformatics Zcluster Up20.png
snow 0.3-8, 0.3-10, 0.3-12, 0.3-13 Statistics Zcluster Up20.png
snowhite 1.1.4 Bioinformatics Zcluster Up20.png
snpEff 4.11 Bioinformatics Zcluster Up20.png
SNPhylo 20140701 Bioinformatics Zcluster Up20.png
Soap2 2.21 Bioinformatics Zcluster Up20.png
SOAPaligner 2.21 Bioinformatics Sapelo Up20.png
SOAPaligner 2.21 Bioinformatics Zcluster Up20.png
SOAPdenovo 1.05 Bioinformatics Zcluster Up20.png
SOAPdenovo-trans 1.01 Bioinformatics Zcluster Up20.png
SOAPdenovo2 r240 Bioinformatics Sapelo Up20.png
SOAPdenovo2 r223, r240 Bioinformatics Zcluster Up20.png
SOAPsnp 1.03 Bioinformatics Zcluster Up20.png
SomaticCall 42811 Bioinformatics Zcluster Up20.png
SortMeRNA 2.1 Other Sapelo Up20.png
Spark 1.6.0, 2.0.1 Other Sapelo Up20.png
spimap 1.1 Bioinformatics Zcluster Up20.png
SPAdes 3.7.0, 3.8.0, 3.9.0, 3.10.0, 3.11.0 Bioinformatics Sapelo Up20.png
SPAdes 3.6.2, 3.8.0, 3.9.0, 3.10.0 Bioinformatics Zcluster Up20.png
SparseAssembler 2012/06/15 Bioinformatics Zcluster Up20.png
SpeedSeq 052317 Bioinformatics Sapelo Up20.png
Splitaake 1.0 Bioinformatics Zcluster Up20.png
spolpred 09/10/2013 Bioinformatics Zcluster Up20.png
sprai 0.9.9.10 Bioinformatics Zcluster Up20.png
sprspace 1.0 Other Zcluster Up20.png
Sputnik 03/20/2013 Bioinformatics Zcluster Up20.png
SRAToolKit 2.8.2-1 Bioinformatics Sapelo Up20.png
SRA 2.8.1 Bioinformatics Zcluster Up20.png
SSAHA2 2.5.5 Bioinformatics Zcluster Up20.png
SSAKE v3-8 Bioinformatics Zcluster Up20.png
SSPACE 2.0 Bioinformatics Zcluster Up20.png
ssr_pipeline 0.95 Bioinformatics Zcluster Up20.png
stacks 1.40, 1.44 Bioinformatics Sapelo Up20.png
stacks 1.35 Bioinformatics Zcluster Up20.png
STAMP 2.1.3 Bioinformatics Sapelo Up20.png
STAMPY 1.0.31 Bioinformatics Sapelo Up20.png
STAMPY 1.0.21 Bioinformatics Zcluster Up20.png
STAR 2.5.3a Bioinformatics Sapelo Up20.png
STAR 2.4.1c Bioinformatics Zcluster Up20.png
STEM 2.0 Bioinformatics Zcluster Up20.png
STEM-hy 1.0 Bioinformatics Zcluster Up20.png
strauto 1.0 Bioinformatics Zcluster Up20.png
StringTie 1.2.0 Bioinformatics Sapelo Up20.png
StringTie 1.1.2 Bioinformatics Zcluster Up20.png
structure 2.3.4 Bioinformatics Sapelo Up20.png
structure 2.3.4 Bioinformatics Zcluster Up20.png
structurama 2.0 Bioinformatics Zcluster Up20.png
subread 1.5.2 Bioinformatics Sapelo Up20.png
subread 1.4.6 Bioinformatics Zcluster Up20.png
suma_package 1.0 Bioinformatics Zcluster Up20.png
SUNTANS 20150923 Other Sapelo Up20.png
SUNTANS 697-trunk, 784 Other Zcluster Up20.png
SuperLU 4.3 Math Library Zcluster Up20.png
SuperLU_dist 3.3 Math Library Zcluster Up20.png
SUPPA 06122015 Bioinformatics Sapelo Up20.png
SVDetect 0.7 Bioinformatics Sapelo Up20.png
SVDetect 0.7 Bioinformatics Zcluster Up20.png
SVDquartets 1.0 Bioinformatics Zcluster Up20.png
SVMlight 6.02 Other Sapelo Up20.png
SWIG 3.0.2 Programming Zcluster Up20.png
T-Coffee 9.03.r1318 Bioinformatics Zcluster Up20.png
T-REX 1.0 Bioinformatics Sapelo Up20.png
tabix 0.2.5 Bioinformatics Zcluster Up20.png
TagCleaner 0.13 Bioinformatics Zcluster Up20.png
Tandem Repeats Finder 4.09 Bioinformatics Sapelo Up20.png
Tandem Repeats Finder 4.07b Bioinformatics Zcluster Up20.png
TAPDANCE 03/20/2013 Bioinformatics Zcluster Up20.png
tassel 5.2.20 Bioinformatics Zcluster Up20.png
tax2tree 1.0 Bioinformatics Zcluster Up20.png
TEClass 2.1 Bioinformatics Zcluster Up20.png
TEPID 0.6 Bioinformatics Sapelo Up20.png
TEMP 1.0.4 Bioinformatics Zcluster Up20.png
tesseract 3.04.01 Bioinformatics Sapelo Up20.png
TEToolkit 1.5.0 Bioinformatics Zcluster Up20.png
tgicl 2.1 Bioinformatics Zcluster Up20.png
Theano 0.8.0 Other Sapelo Up20.png
Theano 0.8.0 Other Zcluster Up20.png
TIGER 1.02 Bioinformatics Zcluster Up20.png
TIGRA 0.4.0 Bioinformatics Sapelo Up20.png
tmhmm 2.0c Bioinformatics Zcluster Up20.png
tophat 2.0.14 Bioinformatics Sapelo Up20.png
tophat 2.0.14 Bioinformatics Zcluster Up20.png
trans-abyss 1.4.4 Bioinformatics Zcluster Up20.png
TransDecoder 2.0.1 Bioinformatics Sapelo Up20.png
TransDecoder 2.0.1 Bioinformatics Zcluster Up20.png
Transposome 0.09.7 Bioinformatics Sapelo Up20.png
TransposonPSI 08222010 Bioinformatics Sapelo Up20.png
Transrate 1.0.1 Bioinformatics Sapelo Up20.png
Tracer v 1.5 Bioinformatics Zcluster Up20.png
TRE 4.07b Bioinformatics Zcluster Up20.png
TreeFix 1.1.10 Bioinformatics Zcluster Up20.png
TreeFix-DTL 1.0.2 Bioinformatics Zcluster Up20.png
treemix 1.12 Bioinformatics Zcluster Up20.png
Triangle 1.6 Math Library Zcluster Up20.png
trimal 1.4 Bioinformatics Zcluster Up20.png
trimmomatic 0.33 Bioinformatics Sapelo Up20.png
trimmomatic 0.32 Bioinformatics Zcluster Up20.png
TrimGalore 4.0 Bioinformatics Sapelo Up20.png
TrimGalore 0.3.7 Bioinformatics Zcluster Up20.png
trimreads 07232013 Bioinformatics Zcluster Up20.png
Trinity 2.06 Bioinformatics Sapelo Up20.png
Trinity 2.06 Bioinformatics Zcluster Up20.png
Trinotate 3.0.1 Bioinformatics Zcluster Up20.png
tRNAscan-SE 1.23, 1.3.1 Bioinformatics Zcluster Up20.png
UClust 1.2.22q Bioinformatics Zcluster Up20.png
UNAFold 3.8 Bioinformatics Zcluster Up20.png
UPP 2.0 Other Zcluster Up20.png
usearch 8.0.1623 Bioinformatics Sapelo Up20.png
usearch 7.0.1090_i86 Bioinformatics Zcluster Up20.png
UCSC 06-17-2015 Bioinformatics Sapelo Up20.png
UCSC 07-11-2014 Bioinformatics Zcluster Up20.png
varscan 2.3.8 Bioinformatics Zcluster Up20.png
vcflib 1.0.0-rc1 Bioinformatics Sapelo Up20.png
vcftools 0.1.12b Bioinformatics Sapelo Up20.png
vcftools 0.1.12a Bioinformatics Zcluster Up20.png
velvet 1.2.10 Bioinformatics Sapelo Up20.png
velvet 1.2.08, 1.2.10 Bioinformatics Zcluster Up20.png
VelvetOptimiser 2.2.5 Bioinformatics Sapelo Up20.png
VelvetOptimiser 2.2.5 Bioinformatics Zcluster Up20.png
VEP 76 Bioinformatics Zcluster Up20.png
VICUNA 1.3 Bioinformatics Zcluster Up20.png
ViennaRNA 1.8.5, 2.1.7 Bioinformatics Zcluster Up20.png
viromescan 05292017 Bioinformatics Sapelo Up20.png
virtualenv 1.8.1 Other Zcluster Up20.png
VMD 1.9.1 Chemistry Zcluster Up20.png
voxnet 0.1 Other Sapelo Up20.png
voxnet 0.1 Other Zcluster Up20.png
vsearch 1.10.1 Bioinformatics Sapelo Up20.png
vsearch 1.1.0 Bioinformatics Zcluster Up20.png
VTK 5.8.0 Other Zcluster Up20.png
webLogo 3.3 Bioinformatics Zcluster Up20.png
weka 3.6.10 Other Zcluster Up20.png
wgs 8.2 Bioinformatics Sapelo Up20.png
wgs 8.2beta-binary Bioinformatics Zcluster Up20.png
whatshap 0.12 Bioinformatics Sapelo Up20.png
wigToBigWig v4 Bioinformatics Zcluster Up20.png
WinHap 2.0 Bioinformatics Sapelo Up20.png
WISE2 2.4.1 Bioinformatics Zcluster Up20.png
WPS 3.7, 3.8 Other Sapelo Up20.png
WPS 3.4.1 Other Zcluster Up20.png
WRF 3.7, 3.8 Other Sapelo Up20.png
WRF 3.4.1 Other Zcluster Up20.png
WRF-Chem 3.8 Other Sapelo Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo Up20.png
WU Blast 2.2.6 Bioinformatics Zcluster Up20.png
Xander_assembler 7/12/2016 Bioinformatics Sapelo Up20.png
xgboost 0.4a30 Other Zcluster Up20.png
XP-CLR 1.0 Bioinformatics Zcluster Up20.png
Xscape 11182014 Bioinformatics Zcluster Up20.png
YAHA 0.1.83 Bioinformatics Sapelo Up20.png
YASRA 2.33 Bioinformatics Sapelo Up20.png
yasra 2.3 Bioinformatics Zcluster Up20.png
yt 3.2.3 Other Sapelo Up20.png
Zbar 0.10 Graphics Sapelo Up20.png
zlib 1.2.5, 1.2.8 Library Sapelo Up20.png
Zorro 2.2 Bioinformatics Zcluster Up20.png

Back To Top Up20.png

Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Software-old&oldid=9360"