Software-old: Difference between revisions

From Research Computing Center Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 69: Line 69:
|-
|-
| [[Bioconductor]] || 2.11, 2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Bioconductor]] || 2.11, 2.13 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[BioPerl-Sapelo|BioPerl]] || 1.6.923 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[BioPerl]] || 1.61 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BioPerl]] || 1.61 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 94: Line 96:
| [[bowtie]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[bowtie]] || 1.1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bowtie2]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
| [[bowtie2-Sapelo|bowtie2]] || 2.2.4 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[bowtie2-Sapelo|bowtie2]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[bowtie2]] || 2.2.3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
|-
| [[BP&P]] || 2.2, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[BP&P]] || 2.2, 3 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 179: Line 181:
|-
|-
| [[CUDA]] || 4.0.17, 4.2.9, 5.0.35 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[CUDA]] || 4.0.17, 4.2.9, 5.0.35 || [[:Category:Programming|Programming]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[cufflinks-Sapelo|cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[cufflinks]] || 2.2.1 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 495: Line 499:
|-
|-
| <span id="N"></span>[[NAMD]] || 2.9 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| <span id="N"></span>[[NAMD]] || 2.9 || [[:Category:Chemistry|Chemistry]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[NCBI Blast-Sapelo|NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NCBI Blast]] || 2.2.26 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[NCBI Blast +-Sapelo|NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[NCBI Blast +]] || 2.2.29 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 737: Line 745:
|-
|-
| [[samblaster]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[samblaster]] || 0.1.15 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[samtools-Sapelo|samtools]] || 1.57.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[samtools]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[samtools]] || 1.0 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 815: Line 825:
|-
|-
| [[ssr_pipeline]] ||0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[ssr_pipeline]] ||0.95 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[stacks-Sapelo|stacks]] || 1.21 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[stacks]] || 1.21 || [[:Category:Bioinformatics|Bioinformatics]] ||  [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[stacks]] || 1.21 || [[:Category:Bioinformatics|Bioinformatics]] ||  [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 881: Line 893:
|-
|-
| [[trimmomatic]] || 0.32 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[trimmomatic]] || 0.32 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[Trinity-Sapelo|Trinity]] || r20140717 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[Trinity]] || r20140717  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[Trinity]] || r20140717  || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
Line 933: Line 947:
|-
|-
| [[WRF]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[WRF]] || 3.4.1 || [[:Category:Other|Other]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
|-
| [[WU Blast-Sapelo|WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Sapelo|Sapelo]] || [[File:Up20.png|20px|link=#top]]
|-
|-
| [[WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  
| [[WU Blast]] || 2.2.6 || [[:Category:Bioinformatics|Bioinformatics]] || [[:Category:Zcluster|Zcluster]] || [[File:Up20.png|20px|link=#top]]  

Revision as of 11:18, 8 December 2014

Installed Software List

Last updated 2014-12-08.

Note: Click on the icons to the right of the column headings to sort the table.

0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Up20.png
Name Version Category Cluster
454 Software Bioinformatics Zcluster Up20.png
a5-miseq 20140604 Bioinformatics Zcluster Up20.png
aaarf 1.0.0 Bioinformatics Zcluster Up20.png
ABINIT 6.12.1 Chemistry Zcluster Up20.png
ABySS 1.3.6 Bioinformatics Zcluster Up20.png
ACT 03/27/2013 Bioinformatics Zcluster Up20.png
ADMIXTOOLS 1.1 Bioinformatics Zcluster Up20.png
Admixture 1.22 Bioinformatics Zcluster Up20.png
AFNI 2013.04.26 Other Zcluster Up20.png
ALLPATHS-LG 47907 Bioinformatics Zcluster Up20.png
AMBER 11, 12, 14 Chemistry Zcluster Up20.png
amos 3.1.0 Bioinformatics Zcluster Up20.png
AmpliconNoise 1.25 Bioinformatics Zcluster Up20.png
ARB 6.0.2 Bioinformatics Zcluster Up20.png
Arlequin 3.5.1.3 Bioinformatics Zcluster Up20.png
Aspera 3.1.0.67054 Other Zcluster Up20.png
AUGUSTUS 2.5.5 Bioinformatics Zcluster Up20.png
bam2fastq 1.1.0 Bioinformatics Zcluster Up20.png
Banjo 2.2.0 Bioinformatics Zcluster Up20.png
BayeScan 2.1 Bioinformatics Zcluster Up20.png
BBMap 33.44 Bioinformatics Zcluster Up20.png
bcl2fastq 1.8.4, 2.14.01.07, 2.15.0.4 Bioinformatics Zcluster Up20.png
BEAST 2.1.3 Bioinformatics Zcluster Up20.png
BEDTools 2.21.1 Bioinformatics Zcluster Up20.png
BEST 2.3.1 Bioinformatics Zcluster Up20.png
bfast 0.7.0 Bioinformatics Zcluster Up20.png
Bio++ Program Suite 2.2.0 Bioinformatics Zcluster Up20.png
Bioconductor 2.11, 2.13 Bioinformatics Zcluster Up20.png
BioPerl 1.6.923 Bioinformatics Sapelo Up20.png
BioPerl 1.61 Bioinformatics Zcluster Up20.png
BioPython 1.64 Bioinformatics Zcluster Up20.png
biotoolbox 1.22 Bioinformatics Zcluster Up20.png
Bismark Bisulfite Mapper 0.13.0 Bioinformatics Zcluster Up20.png
BiSS 0.0.1 Bioinformatics Zcluster Up20.png
BLAS 3.0 Math Library Zcluster Up20.png
BLASR 1.3.1 Bioinformatics Zcluster Up20.png
Blat 3.5 Bioinformatics Zcluster Up20.png
BMGE 1.1 Bioinformatics Zcluster Up20.png
Boost 1.54.0 Library Zcluster Up20.png
bowtie 1.1.1 Bioinformatics Sapelo Up20.png
bowtie 1.1.0 Bioinformatics Zcluster Up20.png
bowtie2 2.2.4 Bioinformatics Sapelo Up20.png
bowtie2 2.2.3 Bioinformatics Zcluster Up20.png
BP&P 2.2, 3 Bioinformatics Zcluster Up20.png
breakdancer 1.1.2_2013_03_08 Bioinformatics Zcluster Up20.png
brownie 2.1.2 Bioinformatics Zcluster Up20.png
BS Seeker Dec 113 Bioinformatics Zcluster Up20.png
BS Seeker2 Oct 30 2013 Bioinformatics Zcluster Up20.png
BUCKy 1.4.3 Bioinformatics Zcluster Up20.png
Burrows-Wheeler Aligner (BWA) 0.7.10 Bioinformatics Sapelo Up20.png
Burrows-Wheeler Aligner (BWA) 0.7.10 Bioinformatics Zcluster Up20.png
bx-python 06/24/2013 Bioinformatics Zcluster Up20.png
Caffe 11.26.2014 Other Zcluster Up20.png
cap3 10/2011 Bioinformatics Zcluster Up20.png
casava 1.8.2 Bioinformatics Zcluster Up20.png
cd-hit 4.6.1 Bioinformatics Zcluster Up20.png
cdbfasta 04282012 Bioinformatics Zcluster Up20.png
cdbtools 06172013 Bioinformatics Zcluster Up20.png
CEAS 1.0.2 Bioinformatics Zcluster Up20.png
CEGMA 2.4.010312 Bioinformatics Zcluster Up20.png
celera 8.1 Bioinformatics Zcluster Up20.png
CFOUR beta Chemistry Zcluster Up20.png
circoletto 21.10.13 Bioinformatics Zcluster Up20.png
circos 0.64 Bioinformatics Zcluster Up20.png
CLAPACK 3.2.1 Math Library Zcluster Up20.png
CLUMPP 1.1.2 Bioinformatics Zcluster Up20.png
ClustalW 2.1 Bioinformatics Zcluster Up20.png
CLUSTER 3.0 Bioinformatics Zcluster Up20.png
CNVnator 0.2.7 Bioinformatics Zcluster Up20.png
cnv-seq 0.2-7 Bioinformatics Zcluster Up20.png
Coding Potential Calculator 0.9-r2 Bioinformatics Zcluster Up20.png
CoMap 1.4.1 Bioinformatics Zcluster Up20.png
Conclustador 0.4a Bioinformatics Zcluster Up20.png
Consed 27.0 Bioinformatics Zcluster Up20.png
CONSEL v0.20 Bioinformatics Zcluster Up20.png
CORMA 5.21 Chemistry Zcluster Up20.png
cortex_con 0.04c Bioinformatics Zcluster Up20.png
cortex_var 1.0.5.3 Bioinformatics Zcluster Up20.png
Count 2010-04-02 Bioinformatics Zcluster Up20.png
CRB-BLAST 0.3.2 Bioinformatics Zcluster Up20.png
CREST 1.0 Bioinformatics Zcluster Up20.png
CrossMap 0.1.5 Other Zcluster Up20.png
ctrax 0.3.2 Other Zcluster Up20.png
CUDA 4.0.17, 4.2.9, 5.0.35 Programming Zcluster Up20.png
cufflinks 2.2.1 Bioinformatics Sapelo Up20.png
cufflinks 2.2.1 Bioinformatics Zcluster Up20.png
cutadapt 1.3 Bioinformatics Zcluster Up20.png
CWEB 3.64 Other Zcluster Up20.png
Davinci 2.09 Bioinformatics Zcluster Up20.png
ddRADseq 0.01 Bioinformatics Zcluster Up20.png
DeconSeq 0.4.2 Bioinformatics Zcluster Up20.png
DELLY 0.5.5 Bioinformatics Zcluster Up20.png
demuxipy 1.0 Bioinformatics Zcluster Up20.png
DETONATE 20140123 Bioinformatics Zcluster Up20.png
DISCOVAR 49856 Bioinformatics Zcluster Up20.png
diyabc 2.0.1 Bioinformatics Zcluster Up20.png
DLCoal 1.0 Bioinformatics Zcluster Up20.png
dnasam 20100621 Bioinformatics Zcluster Up20.png
drmma 0.5 Other Zcluster Up20.png
ea-utils 1.1.2-811 Bioinformatics Zcluster Up20.png
eclipse 4.3.1 Other, Programming Zcluster Up20.png
ECTools 08/18/2014 Other, Programming Zcluster Up20.png
edena v3.130110 Bioinformatics Zcluster Up20.png
EDGE-pro 1.3.1 Bioinformatics Zcluster Up20.png
editag 1.1 Bioinformatics Zcluster Up20.png
EMBOSS 6.5.7 Bioinformatics Zcluster Up20.png
emmix 1.3 Bioinformatics Zcluster Up20.png
ensembl-tools 76 Bioinformatics Zcluster Up20.png
ESTscan 3.0.3 Bioinformatics Zcluster Up20.png
evm (EVidenceModeler) r2012-06-25 Bioinformatics Zcluster Up20.png
exabayes 1.2.1 Bioinformatics Zcluster Up20.png
ExaML 315576 Bioinformatics Zcluster Up20.png
exonerate 2.2.0 Bioinformatics Zcluster Up20.png
express 1.5.1 Bioinformatics Zcluster Up20.png
FAR 2.15 Bioinformatics Zcluster Up20.png
FASTA 36 Bioinformatics Zcluster Up20.png
fasta format cleaner 1.0 Bioinformatics Zcluster Up20.png
fastphase 1.4.0 Bioinformatics Zcluster Up20.png
FastQC 0.11.2 Bioinformatics Zcluster Up20.png
FastTree 2.1.4 Bioinformatics Zcluster Up20.png
FastX 0.0.13.2 Bioinformatics Zcluster Up20.png
FastUniq 1.1 Bioinformatics Zcluster Up20.png
FCP 1.0.4 Bioinformatics Zcluster Up20.png
FFmpeg 0.10.2 Other Zcluster Up20.png
FFTbor 11.21.2014 Bioinformatics Zcluster Up20.png
FFTW 2.1.5, 3.3.0, 3.3.3 Math Library Zcluster Up20.png
FIRE 1.1 Bioinformatics Zcluster Up20.png
FitModel 20140407 Bioinformatics Zcluster Up20.png
FLASH 1.0.3 Bioinformatics Zcluster Up20.png
Flexbar 2.4 Bioinformatics Zcluster Up20.png
FragStats 2.0 Other Zcluster Up20.png
Freebayes 0.9.6 Bioinformatics Zcluster Up20.png
F-Seq 1.84 Bioinformatics Zcluster Up20.png
Fsl 5.0.4 Bioinformatics Zcluster Up20.png
gam-ngs 10/8/2013 Bioinformatics Zcluster Up20.png
GAMESS May2012R1 with XMVB 2.0, May2013R1 Chemistry Zcluster Up20.png
GapFiller 1.11 Bioinformatics Zcluster Up20.png
garli 2.01 Bioinformatics Zcluster Up20.png
gatk 3.2.2 Bioinformatics Zcluster Up20.png
GAUSSIAN09 09 Chemistry Zcluster Up20.png
GaussView 5 Chemistry Zcluster Up20.png
Gblocks 0.91b Bioinformatics Zcluster Up20.png
GDB 7.0.1 Debugger Zcluster Up20.png
GEM 3rd pre-release Bioinformatics Zcluster Up20.png
GeneMark genemark-ES 2.3e gGeneMark version 2.5m Bioinformatics Zcluster Up20.png
Genome Phred version: 0.071220.c Bioinformatics Zcluster Up20.png
GenomeMapper 0.4.4 (Version for SHORE/WMD3) Bioinformatics Zcluster Up20.png
GenomeTools 1.5.1 Bioinformatics Zcluster Up20.png
GenomicConsensus 0.9.0 Bioinformatics Zcluster Up20.png
git 1.7.6, 1.7.11.3, 2.0.0 Other Zcluster Up20.png
Glimmer 3.0.2 Bioinformatics Zcluster Up20.png
GlimmerHMM 3.0.1 Bioinformatics Zcluster Up20.png
gmap-gsnap 2013-09-11 Bioinformatics Zcluster Up20.png
GNU Compilers 4.1.2, 4.4.6, 4.5.3, 4.7.1 Compiler Zcluster Up20.png
GNUMAP 3.0.2 Bioinformatics Zcluster Up20.png
gnuplot 4.0, 4.6.0 Graphics Zcluster Up20.png
gprof 2.17 Profiler Zcluster Up20.png
gpu-blast 1.1 with ncbi-blast-2.2.25+ Bioinformatics Zcluster Up20.png
grace 5.1.22 Graphics Zcluster Up20.png
Gromacs 4.5.5, 4.6.1 Chemistry Zcluster Up20.png
GSL 1.9, 1.15 Math Library Zcluster Up20.png
gss Bioinformatics Zcluster Up20.png
Hapmix 2 Bioinformatics Zcluster Up20.png
HARP 130306_105556 Bioinformatics Zcluster Up20.png
HDF5 1.6.4, 1.8.9 Library Zcluster Up20.png
HH-Suite 2.0.16 Library Zcluster Up20.png
Hmmer 3.1b1 Bioinformatics Zcluster Up20.png
Homer 4.3 Bioinformatics Zcluster Up20.png
htseq 0.5.3p3, 0.6.1p1 Bioinformatics Zcluster Up20.png
HyPhy 2.2.1 Bioinformatics Zcluster Up20.png
igb 6.7.3 Bioinformatics Zcluster Up20.png
IGV 2.1.23 Bioinformatics Zcluster Up20.png
IGVTools 2.3.14 Bioinformatics Zcluster Up20.png
IMa2 8.27.12 Bioinformatics Zcluster Up20.png
indel-Seq-Gen 2.02 Bioinformatics Zcluster Up20.png
Infernal 1.1.1 Bioinformatics Zcluster Up20.png
InStruct 3.2.09 Bioinformatics Zcluster Up20.png
Intel Compilers 2013 SP1 Compiler Zcluster Up20.png
iprscan (InterProScan) 5.0 RC7 Bioinformatics Zcluster Up20.png
iscan 1.0.0 Bioinformatics Zcluster Up20.png
ITK 3.20.1 Other Zcluster Up20.png
JAGS 3.3.0 Statistics Zcluster Up20.png
JasPer 1.900.1 Other Zcluster Up20.png
Jellyfish 2.1.1 Bioinformatics Zcluster Up20.png
JModelTest 2.1.4 Bioinformatics Zcluster Up20.png
Julia 3.0-beta Programming Zcluster Up20.png
k-link 03 27, 2009 Bioinformatics Zcluster Up20.png
Kat 1.0.6 Bioinformatics Zcluster Up20.png
KmerGenie 1.5393 Bioinformatics Zcluster Up20.png
LAMMPS 23Sep13, 5Sep14 Chemistry Zcluster Up20.png
LAPACK 3.0, 3.4.2 Math Library Zcluster Up20.png
LASTZ 1.03.02 Bioinformatics Zcluster Up20.png
LCS 1.0 Bioinformatics Zcluster Up20.png
LDDist 1.3.2 Bioinformatics Zcluster Up20.png
libsequence 1.7.4 Bioinformatics Zcluster Up20.png
LIBSVM 3.17 Other Zcluster Up20.png
LLVM-Clang 3.1 Compiler Zcluster Up20.png
lsa 11182011 Bioinformatics Zcluster Up20.png
macs 1.4.2 Bioinformatics Zcluster Up20.png
macs2 2.1.0.20140616 Bioinformatics Zcluster Up20.png
Mafft 7.029-e Bioinformatics Zcluster Up20.png
maker 2.31.7 Bioinformatics Zcluster Up20.png
Maple 16 Other, Programming, Graphics Zcluster Up20.png
MapSplice2 2.1.7 Bioinformatics Zcluster Up20.png
MAQ 0.7.1 Bioinformatics Zcluster Up20.png
MARDIGRAS 3.21 Chemistry Zcluster Up20.png
MaSuRCA 2.3.0 Bioinformatics Zcluster Up20.png
MATS 3.0.8 Bioinformatics Zcluster Up20.png
Mathematica 9.0 (currently not available) Other, Programming , Graphics Zcluster Up20.png
MatLab R2012a (7.14.0.739) Other, Programming, Graphics Zcluster Up20.png
Mauve 2.3.1 Bioinformatics Zcluster Up20.png
MAVEN-genome 682, 769, 774 Bioinformatics Zcluster Up20.png
MCScanX 10/18/2013 Bioinformatics Zcluster Up20.png
MCL 12-135 Bioinformatics Zcluster Up20.png
MEAD 2.2.9 Chemistry Zcluster Up20.png
megan 5.5.3 Bioinformatics Zcluster Up20.png
MEME 4.10.0 Bioinformatics Zcluster Up20.png
MetaMOS v1.5rc1 Bioinformatics Zcluster Up20.png
Metavelvet 1.2.02 Bioinformatics Zcluster Up20.png
METIS 4.0.3, 5.1.0 Math Library Zcluster Up20.png
Migrate 3.5.1 Bioinformatics Zcluster Up20.png
Minia 1.4683 Bioinformatics Zcluster Up20.png
MIRA 3.9.9 Bioinformatics Zcluster Up20.png
MITE-Hunter 11-2011 Bioinformatics Zcluster Up20.png
MKL 11.0 Math Library Zcluster Up20.png
MOABS 1.2.9 Other, Programming Zcluster Up20.png
MONO 3.0.3 Other, Programming Zcluster Up20.png
MOSAIK 2.2.24 Bioinformatics Zcluster Up20.png
MOTECC qmdcp 90 Chemistry Zcluster Up20.png
MOTHUR 1.32.1 Bioinformatics Zcluster Up20.png
MP-EST 1.2 Bioinformatics Zcluster Up20.png
mpi4py 1.3 Programming Zcluster Up20.png
mpiblast 1.6.0 Bioinformatics Zcluster Up20.png
MrBayes 3.1.2 Bioinformatics Zcluster Up20.png
mrfast 2.5.0.4 Bioinformatics Zcluster Up20.png
MSA 3.8.1b Bioinformatics Zcluster Up20.png
MSG 0.4.3 Bioinformatics Zcluster Up20.png
MultiSplice 0.10 Bioinformatics Zcluster Up20.png
MUMmer 3.22 Bioinformatics Zcluster Up20.png
MUMPS 4.10.0 Math Library Zcluster Up20.png
MUSCLE 3.8.31 Bioinformatics Zcluster Up20.png
MyScanACE 04232012 Bioinformatics Zcluster Up20.png
NAMD 2.9 Chemistry Zcluster Up20.png
NCBI Blast 2.2.26 Bioinformatics Sapelo Up20.png
NCBI Blast 2.2.26 Bioinformatics Zcluster Up20.png
NCBI Blast + 2.2.29 Bioinformatics Sapelo Up20.png
NCBI Blast + 2.2.29 Bioinformatics Zcluster Up20.png
ncbi blast parsers Bioinformatics Zcluster Up20.png
NETCDF 3.6.3, 4.1.3 Library Zcluster Up20.png
netCDF4-python 1.0.5 Library Zcluster Up20.png
netlogo 5.0 Other Zcluster Up20.png
Newbler 2.6 Bioinformatics Zcluster Up20.png
Newick-utils 1.6 Bioinformatics Zcluster Up20.png
ngopt 20140604 Bioinformatics Zcluster Up20.png
NGS QC Toolkit 2.3.3 Bioinformatics Zcluster Up20.png
Ngsutils 0.5.0c Bioinformatics Zcluster Up20.png
NH PhyloBayes 0.2.3 Bioinformatics Zcluster Up20.png
nhPhyML 01/2012 Bioinformatics Zcluster Up20.png
NovelSeq 1.0.2 Bioinformatics Zcluster Up20.png
NovoAlign 2.07.18 Bioinformatics Zcluster Up20.png
NPUTE v1 Bioinformatics Zcluster Up20.png
nseg 04182013 Bioinformatics Zcluster Up20.png
numexp 1.4.2 Other Zcluster Up20.png
NWCHEM 6.3.2 Chemistry Zcluster Up20.png
Oases 0.2.02, 0.2.8 Bioinformatics Zcluster Up20.png
opal 2.0.0 Bioinformatics Zcluster Up20.png
Open Babel 2.3.1 Chemistry Zcluster Up20.png
OpenBUGS 3.2.2 Statistics Zcluster Up20.png
OpenCL 1.0, 1.1 Programming Zcluster Up20.png
OpenCV 2.3.1, 2.4.4 Other Zcluster Up20.png
opera 1.3.1 Bioinformatics Zcluster Up20.png
Oqtans 0.1 Bioinformatics Zcluster Up20.png
OrthoMCL 2.0.9 Bioinformatics Zcluster Up20.png
OSPREY 2.0 Bioinformatics Zcluster Up20.png
p4 r231 Bioinformatics Zcluster Up20.png
PacBioToCA 8.2beta-binary Bioinformatics Zcluster Up20.png
pagan 0.39 Bioinformatics Zcluster Up20.png
pagit v1 Bioinformatics Zcluster Up20.png
PAML 4.8 Bioinformatics Zcluster Up20.png
pandaseq 2.0 Bioinformatics Zcluster Up20.png
Papara_nt 2.1.2 Bioinformatics Zcluster Up20.png
ParMETIS 3.2.0, 4.0.3 Math Library Zcluster Up20.png
ParseRNAseq 1.0 Bioinformatics Zcluster Up20.png
PartitionFinder 1.1.1 Bioinformatics Zcluster Up20.png
PASA r20130605p1 Bioinformatics Zcluster Up20.png
PASHA 1.0.6 Bioinformatics Zcluster Up20.png
pbh5tools 0.8.0 Bioinformatics Zcluster Up20.png
PBSuite 14.9.9 Bioinformatics Zcluster Up20.png
PEAR 0.92 Bioinformatics Zcluster Up20.png
Perl 5.14.1 Programming Zcluster Up20.png
perM 0.4.0 Bioinformatics Zcluster Up20.png
PETSc 3.1-p8, 3.4.2 Math Library Zcluster Up20.png
Pfam_scan 04282012 Bioinformatics Zcluster Up20.png
pftools 2.3.5 Bioinformatics Zcluster Up20.png
PGDBG 12.10 Debugger Zcluster Up20.png
PGI Compilers 2010, 2011, 2012 Compiler Zcluster Up20.png
PGPROF 12.10 Profiler Zcluster Up20.png
phred/phrap/conced Bioinformatics Zcluster Up20.png
Phyldog Bioinformatics Zcluster Up20.png
PhyloBayes 3.3b Bioinformatics Zcluster Up20.png
PhyloBayes-MPI 1.3b, 1.4e Bioinformatics Zcluster Up20.png
Phylip 3.69 Bioinformatics Zcluster Up20.png
PHYML 20110919 Bioinformatics Zcluster Up20.png
picard 1.87 Bioinformatics Zcluster Up20.png
pileup 0.6 Bioinformatics Zcluster Up20.png
pindel 0.2.4t Bioinformatics Zcluster Up20.png
pknotsRG 1.3 Bioinformatics Zcluster Up20.png
platanus 1.2.1 Bioinformatics Zcluster Up20.png
plink 1.07 Bioinformatics Zcluster Up20.png
popbam 0.3 Bioinformatics Zcluster Up20.png
prank 100802 Bioinformatics Zcluster Up20.png
Primer3 2.3.4 Bioinformatics Zcluster Up20.png
Prokka 1.6 Bioinformatics Zcluster Up20.png
Prottest3 3.2.1 Bioinformatics Zcluster Up20.png
psmc 0.6.4-r33 Bioinformatics Zcluster Up20.png
PRINSEQ 0.20.3 Bioinformatics Zcluster Up20.png
PuMA 0.904 Bioinformatics Zcluster Up20.png
pydev 3.3.3 Other, Programming Zcluster Up20.png
pynast 1.2 Bioinformatics Zcluster Up20.png
PyNIO 1.4.1 Other Zcluster Up20.png
pyRAD 2.1.7 Bioinformatics Zcluster Up20.png
pysam 0.6 Bioinformatics Zcluster Up20.png
PyTables 2.3.1 Other Zcluster Up20.png
Python 2.4.3, 2.7.2, 3.3.0. 3.4.0 Programming Zcluster Up20.png
Qiime 1.7.0 Bioinformatics Zcluster Up20.png
QT 4.8.5 Other Zcluster Up20.png
QTL Cartographer 1.17j Bioinformatics Zcluster Up20.png
quake 0.3.4 Bioinformatics Zcluster Up20.png
quast 2.3 Bioinformatics Zcluster Up20.png
Quantum Espresso 4.3.2, 5.0.2 Chemistry Zcluster Up20.png
R 2.14.0, 2.15.0, 2.15.2, 3.0.0, 3.0.2, 3.0.3, 3.1.0, 3.1.1 Statistics Zcluster Up20.png
RACA 0.9.1.1 Bioinformatics Zcluster Up20.png
RADnome 0.0.1-7-25 Bioinformatics Zcluster Up20.png
RAxML 04/26/2012 Bioinformatics Zcluster Up20.png
RAxML-Light 1.0.5 Bioinformatics Zcluster Up20.png
RANDFOLD 2.0 Bioinformatics Zcluster Up20.png
RAPSearch2 2.17 Bioinformatics Zcluster Up20.png
RCCBatchBlast 5.0 Bioinformatics Zcluster Up20.png
RCCBatchBlastPlus 1.0 Bioinformatics Zcluster Up20.png
REAPR 1.0.16 Bioinformatics Zcluster Up20.png
RECON 1.08 Bioinformatics Zcluster Up20.png
Repeatmasker 4.0.5 Bioinformatics Zcluster Up20.png
Repeatmodeler 1.0.8 Bioinformatics Zcluster Up20.png
Reptile 1.1 Bioinformatics Zcluster Up20.png
RepeatScout 1.05 Bioinformatics Zcluster Up20.png
riboPicker 0.4.3 Bioinformatics Zcluster Up20.png
RIP 4 Other Zcluster Up20.png
RITA 1.0.1 Bioinformatics Zcluster Up20.png
RMBlast 2.2.27 Bioinformatics Zcluster Up20.png
Rmpi 0.5-9, 0.6-1 Programming Zcluster Up20.png
RNAshapes 2.1.6 Bioinformatics Zcluster Up20.png
RNAz 2.1 Bioinformatics Zcluster Up20.png
rnnotator 2.4.12 Bioinformatics Zcluster Up20.png
rpy 1.0.3 Other Zcluster Up20.png
rpy2 2.4.3 Other Zcluster Up20.png
Roche 2.6 Bioinformatics Zcluster Up20.png
RogueNaRok 1.0 Bioinformatics Zcluster Up20.png
ROOT 5.34.09 Library Zcluster Up20.png
RSAT (RSA-tools) 1.0 Bioinformatics Zcluster Up20.png
RSEM 1.2.7 Bioinformatics Zcluster Up20.png
RSEG 0.4.8NC Bioinformatics Zcluster Up20.png
RUM 1.11 Bioinformatics Zcluster Up20.png
Sage 6.3 Other Zcluster Up20.png
sailfish 0.6.3 Bioinformatics Zcluster Up20.png
sambamba 0.4.7 Bioinformatics Zcluster Up20.png
samblaster 0.1.15 Bioinformatics Zcluster Up20.png
samtools 1.57.0 Bioinformatics Sapelo Up20.png
samtools 1.0 Bioinformatics Zcluster Up20.png
SAS 9.1 Statistics SAS Server Up20.png
SATé 2.2.7 Bioinformatics Zcluster Up20.png
ScaLAPACK 2.0.2 Math Library Zcluster Up20.png
SEAStAR 0.4.8 Bioinformatics Zcluster Up20.png
segemehl 0.1.9 Bioinformatics Zcluster Up20.png
seqtk 1.0-r63-dirty Bioinformatics Zcluster Up20.png
SEQuel 1.0.2 Bioinformatics Zcluster Up20.png
SHE-RA 012012 Bioinformatics Zcluster Up20.png
SHORE 0.9.3 Bioinformatics Zcluster Up20.png
SHOREmap 2.0 Bioinformatics Zcluster Up20.png
sickle 1.200 Bioinformatics Zcluster Up20.png
SigHunt 1.0 Bioinformatics Zcluster Up20.png
SISRS 1.0 Bioinformatics Zcluster Up20.png
SiZer 07022012 Bioinformatics Zcluster Up20.png
slclust 04282012 Bioinformatics Zcluster Up20.png
SMRT-Analysis 2.3.0 Bioinformatics Zcluster Up20.png
SNAP 2010-7-28 Bioinformatics Zcluster Up20.png
SNAPP 1.1.4 Bioinformatics Zcluster Up20.png
snow 0.3-8, 0.3-10, 0.3-12, 0.3-13 Statistics Zcluster Up20.png
snowhite 1.1.4 Bioinformatics Zcluster Up20.png
snpEff 2_0_5d Bioinformatics Zcluster Up20.png
Soap2 2.21 Bioinformatics Zcluster Up20.png
SOAPaligner 2.21 Bioinformatics Zcluster Up20.png
SOAPdenovo 1.05 Bioinformatics Zcluster Up20.png
SOAPdenovo-trans 1.01 Bioinformatics Zcluster Up20.png
SOAPdenovo2 r223, r240 Bioinformatics Zcluster Up20.png
SomaticCall 42811 Bioinformatics Zcluster Up20.png
spimap 1.1 Bioinformatics Zcluster Up20.png
SPAdes 3.1 Bioinformatics Zcluster Up20.png
SpliceGrapher 0.2.4 Bioinformatics Zcluster Up20.png
Splitaake 1.0 Bioinformatics Zcluster Up20.png
spolpred 09/10/2013 Bioinformatics Zcluster Up20.png
Sputnik 03/20/2013 Bioinformatics Zcluster Up20.png
SRA 2.3.4-2 Bioinformatics Zcluster Up20.png
SSAHA2 2.5.5 Bioinformatics Zcluster Up20.png
SSAKE v3-8 Bioinformatics Zcluster Up20.png
SSPACE 2.0 Bioinformatics Zcluster Up20.png
ssr_pipeline 0.95 Bioinformatics Zcluster Up20.png
stacks 1.21 Bioinformatics Sapelo Up20.png
stacks 1.21 Bioinformatics Zcluster Up20.png
STAMPY 1.0.21 Bioinformatics Zcluster Up20.png
STAR 2.4.0d Bioinformatics Zcluster Up20.png
STEM 2.0 Bioinformatics Zcluster Up20.png
strauto 0.3.1 Bioinformatics Zcluster Up20.png
structure 2.3.4 Bioinformatics Zcluster Up20.png
structurama 2.0 Bioinformatics Zcluster Up20.png
suma_package 1.0 Bioinformatics Zcluster Up20.png
SUNTANS 697-trunk Other Zcluster Up20.png
SuperLU 4.3 Math Library Zcluster Up20.png
SuperLU_dist 3.3 Math Library Zcluster Up20.png
SVDetect r0.7m Bioinformatics Zcluster Up20.png
SVDquartets 1.0 Bioinformatics Zcluster Up20.png
SWIG 3.0.2 Programming Zcluster Up20.png
T-Coffee 9.03.r1318 Bioinformatics Zcluster Up20.png
tabix 0.2.5 Bioinformatics Zcluster Up20.png
TagCleaner 0.13 Bioinformatics Zcluster Up20.png
Tandem Repeats Finder 4.07b Bioinformatics Zcluster Up20.png
TAPDANCE 03/20/2013 Bioinformatics Zcluster Up20.png
tassel 4.0 Bioinformatics Zcluster Up20.png
tax2tree 1.0 Bioinformatics Zcluster Up20.png
TEClass 2.1 Bioinformatics Zcluster Up20.png
tgicl 2.1 Bioinformatics Zcluster Up20.png
TIGER 1.02 Bioinformatics Zcluster Up20.png
tophat 2.0.13 Bioinformatics Zcluster Up20.png
trans-abyss 1.4.4 Bioinformatics Zcluster Up20.png
Tracer v 1.5 Bioinformatics Zcluster Up20.png
TRE 4.07b Bioinformatics Zcluster Up20.png
TreeFix-DTL 1.0.2 Bioinformatics Zcluster Up20.png
treemix 1.12 Bioinformatics Zcluster Up20.png
Triangle 1.6 Math Library Zcluster Up20.png
trimmomatic 0.32 Bioinformatics Zcluster Up20.png
Trinity r20140717 Bioinformatics Sapelo Up20.png
Trinity r20140717 Bioinformatics Zcluster Up20.png
Trinotate r20131110 Bioinformatics Zcluster Up20.png
tRNAscan-SE 1.23 Bioinformatics Zcluster Up20.png
UClust 1.2.22q Bioinformatics Zcluster Up20.png
UNAFold 3.8 Bioinformatics Zcluster Up20.png
UPP 2.0 Other Zcluster Up20.png
usearch v6.0.30 Bioinformatics Zcluster Up20.png
UCSC 07-11-2014 Bioinformatics Zcluster Up20.png
varscan 2.3.6 Bioinformatics Zcluster Up20.png
vcftools 0.1.12a Bioinformatics Zcluster Up20.png
velvet 1.2.08, 1.2.10 Bioinformatics Zcluster Up20.png
VelvetOptimiser 2.2.5 Bioinformatics Zcluster Up20.png
VEP 76 Bioinformatics Zcluster Up20.png
VICUNA 1.3 Bioinformatics Zcluster Up20.png
ViennaRNA 1.8.5, 2.1.7 Bioinformatics Zcluster Up20.png
virtualenv 1.8.1 Other Zcluster Up20.png
vmatch 2.1.6 Bioinformatics Zcluster Up20.png
VMD 1.9.1 Chemistry Zcluster Up20.png
VTK 5.8.0 Other Zcluster Up20.png
webLogo 3.3 Bioinformatics Zcluster Up20.png
weka 3.6.10 Other Zcluster Up20.png
wgs 8.2beta-binary Bioinformatics Zcluster Up20.png
wigToBigWig v4 Bioinformatics Zcluster Up20.png
WISE2 2.2.0 Bioinformatics Zcluster Up20.png
WPS 3.4.1 Other Zcluster Up20.png
WRF 3.4.1 Other Zcluster Up20.png
WU Blast 2.2.6 Bioinformatics Sapelo Up20.png
WU Blast 2.2.6 Bioinformatics Zcluster Up20.png
Xscape 11182014 Bioinformatics Zcluster Up20.png
yasra 2.3 Bioinformatics Zcluster Up20.png
Zorro 2.2 Bioinformatics Zcluster Up20.png

Back To Top Up20.png

Retrieved from "https://wiki.gacrc.uga.edu/index.php?title=Software-old&oldid=5333"